Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05745

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05744 and MPMX19_05745 are separated by 196 nucleotidesMPMX19_05745 and MPMX19_05746 overlap by 1 nucleotides MPMX19_05744: MPMX19_05744 - hypothetical protein, at 460,343 to 462,427 _05744 MPMX19_05745: MPMX19_05745 - Sensor histidine kinase RcsC, at 462,624 to 466,052 _05745 MPMX19_05746: MPMX19_05746 - hypothetical protein, at 466,052 to 467,893 _05746 Position (kb) 462 463 464 465 466 467Strain fitness (log2 ratio) -2 -1 0 1 2at 461.974 kb on + strand, within MPMX19_05744at 461.974 kb on + strand, within MPMX19_05744at 461.974 kb on + strand, within MPMX19_05744at 461.975 kb on - strand, within MPMX19_05744at 461.975 kb on - strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.009 kb on + strand, within MPMX19_05744at 462.009 kb on + strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.120 kb on + strand, within MPMX19_05744at 462.120 kb on + strand, within MPMX19_05744at 462.121 kb on - strand, within MPMX19_05744at 462.121 kb on - strand, within MPMX19_05744at 462.410 kb on - strandat 462.410 kb on - strandat 462.453 kb on + strandat 462.493 kb on + strandat 463.180 kb on + strand, within MPMX19_05745at 463.180 kb on + strand, within MPMX19_05745at 463.180 kb on + strand, within MPMX19_05745at 463.180 kb on + strand, within MPMX19_05745at 463.181 kb on - strand, within MPMX19_05745at 463.181 kb on - strand, within MPMX19_05745at 463.204 kb on + strand, within MPMX19_05745at 463.204 kb on + strand, within MPMX19_05745at 463.204 kb on + strand, within MPMX19_05745at 463.205 kb on - strand, within MPMX19_05745at 463.205 kb on - strand, within MPMX19_05745at 464.386 kb on + strand, within MPMX19_05745at 464.386 kb on + strand, within MPMX19_05745at 464.386 kb on + strand, within MPMX19_05745at 464.387 kb on - strand, within MPMX19_05745at 464.387 kb on - strand, within MPMX19_05745at 464.387 kb on - strand, within MPMX19_05745at 464.509 kb on + strand, within MPMX19_05745at 464.509 kb on + strand, within MPMX19_05745at 464.509 kb on + strand, within MPMX19_05745at 464.510 kb on - strand, within MPMX19_05745at 464.510 kb on - strand, within MPMX19_05745at 464.510 kb on - strand, within MPMX19_05745at 464.510 kb on - strand, within MPMX19_05745at 464.696 kb on - strand, within MPMX19_05745at 464.767 kb on + strand, within MPMX19_05745at 464.821 kb on + strand, within MPMX19_05745at 464.821 kb on + strand, within MPMX19_05745at 464.821 kb on + strand, within MPMX19_05745at 464.821 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.823 kb on + strandat 465.823 kb on + strandat 465.823 kb on + strandat 465.823 kb on + strandat 465.823 kb on + strandat 465.824 kb on - strandat 465.950 kb on - strandat 465.950 kb on - strandat 465.950 kb on - strandat 465.950 kb on - strandat 466.251 kb on + strand, within MPMX19_05746at 466.251 kb on + strand, within MPMX19_05746at 466.252 kb on - strand, within MPMX19_05746at 466.252 kb on - strand, within MPMX19_05746

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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461,974 + MPMX19_05744 0.78 +0.0
461,974 + MPMX19_05744 0.78 +0.5
461,974 + MPMX19_05744 0.78 +0.6
461,975 - MPMX19_05744 0.78 -0.9
461,975 - MPMX19_05744 0.78 -0.2
461,976 + MPMX19_05744 0.78 +1.6
461,976 + MPMX19_05744 0.78 -1.2
461,976 + MPMX19_05744 0.78 +0.4
461,976 + MPMX19_05744 0.78 -0.4
461,976 + MPMX19_05744 0.78 -1.4
461,976 + MPMX19_05744 0.78 +1.0
461,976 + MPMX19_05744 0.78 -0.4
461,976 + MPMX19_05744 0.78 +0.9
461,976 + MPMX19_05744 0.78 -0.5
461,976 + MPMX19_05744 0.78 +0.1
461,976 + MPMX19_05744 0.78 +1.0
461,976 + MPMX19_05744 0.78 -0.5
461,976 + MPMX19_05744 0.78 +0.3
461,976 + MPMX19_05744 0.78 +1.9
461,976 + MPMX19_05744 0.78 -1.7
461,977 - MPMX19_05744 0.78 -0.4
461,977 - MPMX19_05744 0.78 +0.2
461,977 - MPMX19_05744 0.78 +0.3
461,977 - MPMX19_05744 0.78 +0.5
461,977 - MPMX19_05744 0.78 -0.4
461,977 - MPMX19_05744 0.78 -0.6
461,977 - MPMX19_05744 0.78 -0.1
461,977 - MPMX19_05744 0.78 +0.0
461,977 - MPMX19_05744 0.78 +0.3
461,977 - MPMX19_05744 0.78 +0.2
461,977 - MPMX19_05744 0.78 -1.6
461,977 - MPMX19_05744 0.78 -0.9
461,977 - MPMX19_05744 0.78 +0.3
461,977 - MPMX19_05744 0.78 -0.1
461,977 - MPMX19_05744 0.78 +0.6
461,977 - MPMX19_05744 0.78 -0.1
461,977 - MPMX19_05744 0.78 +0.9
461,977 - MPMX19_05744 0.78 -0.6
462,006 + MPMX19_05744 0.80 -0.1
462,006 + MPMX19_05744 0.80 -1.7
462,006 + MPMX19_05744 0.80 +0.8
462,006 + MPMX19_05744 0.80 -1.7
462,006 + MPMX19_05744 0.80 +0.6
462,006 + MPMX19_05744 0.80 +0.8
462,006 + MPMX19_05744 0.80 -0.7
462,006 + MPMX19_05744 0.80 +1.1
462,007 - MPMX19_05744 0.80 +0.9
462,007 - MPMX19_05744 0.80 +1.2
462,007 - MPMX19_05744 0.80 -1.0
462,007 - MPMX19_05744 0.80 -0.5
462,007 - MPMX19_05744 0.80 -0.8
462,007 - MPMX19_05744 0.80 +0.9
462,007 - MPMX19_05744 0.80 -0.1
462,007 - MPMX19_05744 0.80 +0.0
462,007 - MPMX19_05744 0.80 -0.4
462,009 + MPMX19_05744 0.80 +0.2
462,009 + MPMX19_05744 0.80 -0.1
462,010 - MPMX19_05744 0.80 -0.4
462,010 - MPMX19_05744 0.80 -1.2
462,010 - MPMX19_05744 0.80 -0.3
462,010 - MPMX19_05744 0.80 -0.3
462,010 - MPMX19_05744 0.80 -0.5
462,120 + MPMX19_05744 0.85 -1.0
462,120 + MPMX19_05744 0.85 -0.7
462,121 - MPMX19_05744 0.85 -1.2
462,121 - MPMX19_05744 0.85 -0.9
462,410 - -0.6
462,410 - -1.4
462,453 + -0.5
462,493 + +1.2
463,180 + MPMX19_05745 0.16 -1.0
463,180 + MPMX19_05745 0.16 -0.5
463,180 + MPMX19_05745 0.16 +0.0
463,180 + MPMX19_05745 0.16 -0.1
463,181 - MPMX19_05745 0.16 -0.6
463,181 - MPMX19_05745 0.16 -0.6
463,204 + MPMX19_05745 0.17 -0.2
463,204 + MPMX19_05745 0.17 -0.1
463,204 + MPMX19_05745 0.17 -0.6
463,205 - MPMX19_05745 0.17 -1.5
463,205 - MPMX19_05745 0.17 +2.2
464,386 + MPMX19_05745 0.51 +0.1
464,386 + MPMX19_05745 0.51 +0.6
464,386 + MPMX19_05745 0.51 -0.7
464,387 - MPMX19_05745 0.51 -0.5
464,387 - MPMX19_05745 0.51 -0.4
464,387 - MPMX19_05745 0.51 -1.2
464,509 + MPMX19_05745 0.55 -1.6
464,509 + MPMX19_05745 0.55 +1.1
464,509 + MPMX19_05745 0.55 -0.4
464,510 - MPMX19_05745 0.55 -0.6
464,510 - MPMX19_05745 0.55 +0.1
464,510 - MPMX19_05745 0.55 +1.3
464,510 - MPMX19_05745 0.55 +0.3
464,696 - MPMX19_05745 0.60 -0.3
464,767 + MPMX19_05745 0.62 -0.6
464,821 + MPMX19_05745 0.64 -1.0
464,821 + MPMX19_05745 0.64 -1.2
464,821 + MPMX19_05745 0.64 +0.2
464,821 + MPMX19_05745 0.64 -0.4
465,190 + MPMX19_05745 0.75 -0.1
465,190 + MPMX19_05745 0.75 -0.3
465,190 + MPMX19_05745 0.75 +0.0
465,190 + MPMX19_05745 0.75 +0.2
465,190 + MPMX19_05745 0.75 -0.2
465,190 + MPMX19_05745 0.75 +0.2
465,190 + MPMX19_05745 0.75 +0.4
465,190 + MPMX19_05745 0.75 +0.0
465,190 + MPMX19_05745 0.75 +0.5
465,191 - MPMX19_05745 0.75 -1.1
465,191 - MPMX19_05745 0.75 -0.4
465,191 - MPMX19_05745 0.75 -2.3
465,191 - MPMX19_05745 0.75 -0.5
465,191 - MPMX19_05745 0.75 +0.4
465,191 - MPMX19_05745 0.75 +0.0
465,191 - MPMX19_05745 0.75 -0.2
465,191 - MPMX19_05745 0.75 -0.8
465,191 - MPMX19_05745 0.75 -1.7
465,191 - MPMX19_05745 0.75 -0.9
465,496 + MPMX19_05745 0.84 -0.2
465,496 + MPMX19_05745 0.84 +0.6
465,496 + MPMX19_05745 0.84 -0.2
465,496 + MPMX19_05745 0.84 -2.1
465,496 + MPMX19_05745 0.84 +0.8
465,496 + MPMX19_05745 0.84 +0.3
465,496 + MPMX19_05745 0.84 -0.7
465,496 + MPMX19_05745 0.84 +0.2
465,496 + MPMX19_05745 0.84 -0.7
465,496 + MPMX19_05745 0.84 +0.6
465,496 + MPMX19_05745 0.84 +0.2
465,496 + MPMX19_05745 0.84 -0.2
465,497 - MPMX19_05745 0.84 +0.1
465,497 - MPMX19_05745 0.84 +0.4
465,497 - MPMX19_05745 0.84 -1.6
465,497 - MPMX19_05745 0.84 -0.7
465,497 - MPMX19_05745 0.84 -0.1
465,497 - MPMX19_05745 0.84 +0.7
465,497 - MPMX19_05745 0.84 -0.5
465,497 - MPMX19_05745 0.84 -0.1
465,823 + -1.0
465,823 + +1.4
465,823 + -0.1
465,823 + +0.7
465,823 + +0.2
465,824 - +0.5
465,950 - -0.7
465,950 - -0.6
465,950 - -1.6
465,950 - +0.3
466,251 + MPMX19_05746 0.11 +0.5
466,251 + MPMX19_05746 0.11 +0.5
466,252 - MPMX19_05746 0.11 -0.6
466,252 - MPMX19_05746 0.11 -0.7

Or see this region's nucleotide sequence