Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05725 and MPMX19_05726 are separated by 13 nucleotides MPMX19_05726 and MPMX19_05727 are separated by 103 nucleotides MPMX19_05727 and MPMX19_05728 are separated by 15 nucleotides MPMX19_05728 and MPMX19_05729 are separated by 25 nucleotides
MPMX19_05725: MPMX19_05725 - hypothetical protein, at 443,522 to 444,949
_05725
MPMX19_05726: MPMX19_05726 - hypothetical protein, at 444,963 to 445,739
_05726
MPMX19_05727: MPMX19_05727 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 445,843 to 446,823
_05727
MPMX19_05728: MPMX19_05728 - Glyoxylate/hydroxypyruvate reductase B, at 446,839 to 447,792
_05728
MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570
_05729
Position (kb)
445
446
447 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.760 kb on + strand at 445.760 kb on + strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.795 kb on + strand at 445.946 kb on - strand, within MPMX19_05727 at 445.946 kb on - strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.179 kb on - strand, within MPMX19_05727 at 446.179 kb on - strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.240 kb on - strand, within MPMX19_05727 at 446.240 kb on - strand, within MPMX19_05727 at 446.479 kb on + strand, within MPMX19_05727 at 446.479 kb on + strand, within MPMX19_05727 at 446.479 kb on + strand, within MPMX19_05727 at 446.480 kb on - strand, within MPMX19_05727 at 446.480 kb on - strand, within MPMX19_05727 at 446.551 kb on + strand, within MPMX19_05727 at 446.569 kb on + strand, within MPMX19_05727 at 446.569 kb on + strand, within MPMX19_05727 at 446.570 kb on - strand, within MPMX19_05727 at 446.570 kb on - strand, within MPMX19_05727 at 446.713 kb on + strand, within MPMX19_05727 at 446.713 kb on + strand, within MPMX19_05727 at 446.714 kb on - strand, within MPMX19_05727 at 446.809 kb on + strand at 446.809 kb on + strand at 446.809 kb on + strand at 446.809 kb on + strand at 446.809 kb on + strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.863 kb on + strand at 446.863 kb on + strand at 446.863 kb on + strand at 446.864 kb on - strand at 446.864 kb on - strand at 447.692 kb on - strand, within MPMX19_05728 at 447.709 kb on + strand at 447.709 kb on + strand at 447.710 kb on - strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 444,952 + -0.2 444,952 + +0.0 444,952 + -0.8 444,952 + -0.1 444,952 + -0.3 444,952 + -0.1 444,952 + -0.6 444,952 + +0.4 444,952 + -0.1 444,952 + -0.5 444,953 - +0.6 444,953 - +0.8 444,953 - -0.1 444,953 - +1.1 444,953 - +0.1 444,953 - +0.0 444,953 - -1.7 445,457 - MPMX19_05726 0.64 +0.2 445,457 - MPMX19_05726 0.64 +0.1 445,457 - MPMX19_05726 0.64 -0.1 445,678 + -0.3 445,678 + -2.2 445,678 + -0.9 445,678 + -0.3 445,678 + +0.1 445,678 + -0.6 445,678 + -2.1 445,678 + -1.6 445,678 + +0.6 445,678 + +0.1 445,678 + +1.2 445,678 + +0.8 445,678 + +0.5 445,679 - +0.1 445,679 - +0.3 445,679 - +0.0 445,679 - -1.1 445,679 - -0.9 445,679 - +0.6 445,679 - +0.5 445,679 - -0.1 445,679 - -0.6 445,679 - +0.0 445,679 - -0.1 445,679 - +1.3 445,679 - +0.1 445,760 + -1.2 445,760 + -0.1 445,761 - -0.8 445,761 - -0.9 445,761 - -0.9 445,761 - -1.9 445,765 + +0.2 445,765 + -2.0 445,765 + -1.5 445,765 + -0.4 445,765 + +0.3 445,765 + -2.0 445,766 - -1.9 445,766 - +0.0 445,766 - -0.5 445,795 + -0.1 445,946 - MPMX19_05727 0.10 -1.0 445,946 - MPMX19_05727 0.10 +1.6 446,176 + MPMX19_05727 0.34 -2.2 446,176 + MPMX19_05727 0.34 -1.2 446,176 + MPMX19_05727 0.34 -1.7 446,176 + MPMX19_05727 0.34 +0.6 446,176 + MPMX19_05727 0.34 -1.1 446,176 + MPMX19_05727 0.34 -1.4 446,176 + MPMX19_05727 0.34 +0.8 446,176 + MPMX19_05727 0.34 +0.3 446,176 + MPMX19_05727 0.34 +0.0 446,176 + MPMX19_05727 0.34 -0.7 446,177 - MPMX19_05727 0.34 -1.5 446,177 - MPMX19_05727 0.34 +0.9 446,177 - MPMX19_05727 0.34 -0.7 446,177 - MPMX19_05727 0.34 -0.1 446,177 - MPMX19_05727 0.34 +0.0 446,177 - MPMX19_05727 0.34 +0.2 446,177 - MPMX19_05727 0.34 -1.7 446,178 + MPMX19_05727 0.34 +0.3 446,178 + MPMX19_05727 0.34 -1.7 446,178 + MPMX19_05727 0.34 -1.9 446,178 + MPMX19_05727 0.34 -0.5 446,179 - MPMX19_05727 0.34 +1.2 446,179 - MPMX19_05727 0.34 -0.1 446,215 + MPMX19_05727 0.38 -0.5 446,215 + MPMX19_05727 0.38 -0.7 446,215 + MPMX19_05727 0.38 -1.6 446,215 + MPMX19_05727 0.38 -0.2 446,215 + MPMX19_05727 0.38 -1.7 446,216 - MPMX19_05727 0.38 -0.6 446,216 - MPMX19_05727 0.38 -0.5 446,216 - MPMX19_05727 0.38 -0.4 446,216 - MPMX19_05727 0.38 -0.2 446,216 - MPMX19_05727 0.38 -2.3 446,216 - MPMX19_05727 0.38 -1.4 446,216 - MPMX19_05727 0.38 -2.7 446,239 + MPMX19_05727 0.40 +0.6 446,239 + MPMX19_05727 0.40 -1.2 446,239 + MPMX19_05727 0.40 -1.7 446,239 + MPMX19_05727 0.40 -2.0 446,239 + MPMX19_05727 0.40 -1.2 446,239 + MPMX19_05727 0.40 -0.3 446,239 + MPMX19_05727 0.40 +1.4 446,240 - MPMX19_05727 0.40 -0.5 446,240 - MPMX19_05727 0.40 -2.5 446,479 + MPMX19_05727 0.65 +0.5 446,479 + MPMX19_05727 0.65 +0.4 446,479 + MPMX19_05727 0.65 -2.1 446,480 - MPMX19_05727 0.65 -1.3 446,480 - MPMX19_05727 0.65 +0.2 446,551 + MPMX19_05727 0.72 -1.0 446,569 + MPMX19_05727 0.74 -2.0 446,569 + MPMX19_05727 0.74 +0.4 446,570 - MPMX19_05727 0.74 +2.0 446,570 - MPMX19_05727 0.74 +0.7 446,713 + MPMX19_05727 0.89 -1.0 446,713 + MPMX19_05727 0.89 -0.8 446,714 - MPMX19_05727 0.89 +0.7 446,809 + -1.0 446,809 + -1.5 446,809 + +0.3 446,809 + -0.3 446,809 + -2.6 446,810 - -0.9 446,810 - -1.6 446,810 - +0.3 446,810 - +1.2 446,810 - -0.5 446,810 - -0.1 446,810 - -2.7 446,810 - +0.1 446,821 + -0.4 446,821 + +0.0 446,821 + -0.3 446,821 + -0.4 446,821 + +0.4 446,821 + -1.5 446,822 - -3.6 446,822 - -0.6 446,822 - -2.0 446,822 - +0.1 446,822 - -0.4 446,822 - -1.7 446,822 - -0.8 446,822 - -1.6 446,822 - -1.2 446,822 - +0.5 446,822 - +1.6 446,822 - -0.3 446,822 - -1.4 446,863 + +0.5 446,863 + -0.5 446,863 + +0.9 446,864 - -0.6 446,864 - -0.1 447,692 - MPMX19_05728 0.89 +0.6 447,709 + -1.7 447,709 + -1.0 447,710 - -0.3 447,721 + +0.4 447,721 + -0.1 447,721 + -0.5 447,721 + +0.3 447,722 - +0.3
Or see this region's nucleotide sequence