Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05719

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05717 and MPMX19_05718 are separated by 110 nucleotidesMPMX19_05718 and MPMX19_05719 are separated by 198 nucleotidesMPMX19_05719 and MPMX19_05720 are separated by 288 nucleotides MPMX19_05717: MPMX19_05717 - hypothetical protein, at 436,047 to 436,874 _05717 MPMX19_05718: MPMX19_05718 - hypothetical protein, at 436,985 to 437,650 _05718 MPMX19_05719: MPMX19_05719 - hypothetical protein, at 437,849 to 438,448 _05719 MPMX19_05720: MPMX19_05720 - hypothetical protein, at 438,737 to 439,891 _05720 Position (kb) 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 436.980 kb on + strandat 436.980 kb on + strandat 436.981 kb on - strandat 436.981 kb on - strandat 436.994 kb on - strandat 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.052 kb on + strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.053 kb on - strand, within MPMX19_05718at 437.076 kb on + strand, within MPMX19_05718at 437.076 kb on + strand, within MPMX19_05718at 437.077 kb on - strand, within MPMX19_05718at 437.077 kb on - strand, within MPMX19_05718at 437.077 kb on - strand, within MPMX19_05718at 437.077 kb on - strand, within MPMX19_05718at 437.077 kb on - strand, within MPMX19_05718at 437.077 kb on - strand, within MPMX19_05718at 437.703 kb on + strandat 437.703 kb on + strandat 437.703 kb on + strandat 437.703 kb on + strandat 437.703 kb on + strandat 437.703 kb on + strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.704 kb on - strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.705 kb on + strandat 437.706 kb on - strandat 437.706 kb on - strandat 437.706 kb on - strandat 437.706 kb on - strandat 438.012 kb on + strand, within MPMX19_05719at 438.012 kb on + strand, within MPMX19_05719at 438.013 kb on - strand, within MPMX19_05719at 438.013 kb on - strand, within MPMX19_05719at 438.013 kb on - strand, within MPMX19_05719at 438.556 kb on + strandat 438.556 kb on + strandat 438.556 kb on + strandat 438.556 kb on + strandat 438.556 kb on + strandat 438.557 kb on - strandat 438.557 kb on - strandat 438.557 kb on - strandat 438.557 kb on - strandat 438.557 kb on - strandat 438.557 kb on - strandat 438.557 kb on - strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.595 kb on + strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.596 kb on - strandat 438.612 kb on + strandat 438.612 kb on + strandat 438.612 kb on + strandat 438.612 kb on + strandat 438.612 kb on + strandat 438.613 kb on - strandat 438.613 kb on - strandat 438.613 kb on - strandat 438.613 kb on - strandat 438.613 kb on - strandat 438.616 kb on + strandat 438.616 kb on + strandat 438.616 kb on + strandat 438.616 kb on + strandat 438.616 kb on + strandat 438.616 kb on + strandat 438.617 kb on - strandat 438.617 kb on - strandat 438.617 kb on - strandat 438.617 kb on - strandat 438.617 kb on - strandat 438.617 kb on - strandat 439.113 kb on - strand, within MPMX19_05720at 439.113 kb on - strand, within MPMX19_05720

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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436,980 + -1.0
436,980 + +0.4
436,981 - -0.6
436,981 - +0.6
436,994 - -1.9
437,052 + MPMX19_05718 0.10 -2.9
437,052 + MPMX19_05718 0.10 -0.3
437,052 + MPMX19_05718 0.10 -1.0
437,052 + MPMX19_05718 0.10 -0.3
437,052 + MPMX19_05718 0.10 +0.4
437,052 + MPMX19_05718 0.10 +0.1
437,052 + MPMX19_05718 0.10 +0.5
437,052 + MPMX19_05718 0.10 -2.1
437,052 + MPMX19_05718 0.10 +0.4
437,052 + MPMX19_05718 0.10 +0.6
437,052 + MPMX19_05718 0.10 -0.6
437,052 + MPMX19_05718 0.10 +0.4
437,052 + MPMX19_05718 0.10 -0.8
437,052 + MPMX19_05718 0.10 -0.1
437,052 + MPMX19_05718 0.10 -1.0
437,052 + MPMX19_05718 0.10 +0.0
437,053 - MPMX19_05718 0.10 +0.5
437,053 - MPMX19_05718 0.10 +1.1
437,053 - MPMX19_05718 0.10 -1.5
437,053 - MPMX19_05718 0.10 +0.0
437,053 - MPMX19_05718 0.10 -1.1
437,053 - MPMX19_05718 0.10 -0.1
437,053 - MPMX19_05718 0.10 +0.3
437,053 - MPMX19_05718 0.10 +0.5
437,053 - MPMX19_05718 0.10 +0.8
437,053 - MPMX19_05718 0.10 -1.9
437,053 - MPMX19_05718 0.10 +0.0
437,053 - MPMX19_05718 0.10 -0.4
437,053 - MPMX19_05718 0.10 +0.6
437,053 - MPMX19_05718 0.10 -2.4
437,053 - MPMX19_05718 0.10 -0.4
437,053 - MPMX19_05718 0.10 -0.6
437,076 + MPMX19_05718 0.14 +1.1
437,076 + MPMX19_05718 0.14 +0.0
437,077 - MPMX19_05718 0.14 -0.2
437,077 - MPMX19_05718 0.14 -0.9
437,077 - MPMX19_05718 0.14 +0.3
437,077 - MPMX19_05718 0.14 -1.4
437,077 - MPMX19_05718 0.14 -0.8
437,077 - MPMX19_05718 0.14 +0.3
437,703 + -1.3
437,703 + -1.5
437,703 + +0.6
437,703 + +0.0
437,703 + -1.4
437,703 + -0.8
437,704 - -1.2
437,704 - +0.6
437,704 - +0.6
437,704 - -0.3
437,704 - -0.4
437,704 - -2.1
437,704 - -0.2
437,704 - -0.4
437,704 - -1.2
437,705 + -1.7
437,705 + -0.6
437,705 + -0.8
437,705 + -0.3
437,705 + -0.7
437,705 + -0.8
437,705 + +0.9
437,705 + +1.1
437,705 + -1.7
437,706 - -2.9
437,706 - -0.7
437,706 - -0.5
437,706 - -0.9
438,012 + MPMX19_05719 0.27 -2.0
438,012 + MPMX19_05719 0.27 -0.6
438,013 - MPMX19_05719 0.27 -0.2
438,013 - MPMX19_05719 0.27 -0.6
438,013 - MPMX19_05719 0.27 -1.4
438,556 + +0.6
438,556 + -0.8
438,556 + -0.4
438,556 + -0.2
438,556 + -0.7
438,557 - -0.6
438,557 - +2.2
438,557 - -0.2
438,557 - -0.6
438,557 - +0.0
438,557 - -1.1
438,557 - -1.0
438,595 + -1.4
438,595 + +0.2
438,595 + -0.3
438,595 + -0.5
438,595 + -0.4
438,595 + -1.5
438,595 + +0.4
438,595 + +2.3
438,595 + +0.4
438,595 + +0.6
438,595 + +0.4
438,595 + -1.4
438,595 + -0.3
438,596 - +1.0
438,596 - -0.6
438,596 - -0.2
438,596 - -0.4
438,596 - -0.8
438,596 - -1.0
438,596 - +1.0
438,596 - +0.0
438,596 - -2.4
438,596 - -0.8
438,596 - -0.6
438,596 - +0.2
438,596 - -0.9
438,596 - -0.6
438,596 - -0.1
438,612 + -1.0
438,612 + -0.6
438,612 + -0.4
438,612 + -0.1
438,612 + -0.7
438,613 - -2.0
438,613 - -0.4
438,613 - -0.3
438,613 - +1.9
438,613 - -0.4
438,616 + +0.0
438,616 + +0.3
438,616 + -0.4
438,616 + +0.6
438,616 + -0.1
438,616 + -1.0
438,617 - -0.7
438,617 - +0.2
438,617 - +0.0
438,617 - -0.2
438,617 - -0.9
438,617 - +0.3
439,113 - MPMX19_05720 0.33 +1.0
439,113 - MPMX19_05720 0.33 -1.0

Or see this region's nucleotide sequence