Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05647

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05644 and MPMX19_05645 are separated by 209 nucleotidesMPMX19_05645 and MPMX19_05646 are separated by 4 nucleotidesMPMX19_05646 and MPMX19_05647 are separated by 217 nucleotidesMPMX19_05647 and MPMX19_05648 are separated by 61 nucleotidesMPMX19_05648 and MPMX19_05649 are separated by 88 nucleotides MPMX19_05644: MPMX19_05644 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 364,933 to 365,679 _05644 MPMX19_05645: MPMX19_05645 - tRNA-Asp, at 365,889 to 365,965 _05645 MPMX19_05646: MPMX19_05646 - tRNA-Asn, at 365,970 to 366,045 _05646 MPMX19_05647: MPMX19_05647 - hypothetical protein, at 366,263 to 366,841 _05647 MPMX19_05648: MPMX19_05648 - hypothetical protein, at 366,903 to 367,286 _05648 MPMX19_05649: MPMX19_05649 - hypothetical protein, at 367,375 to 368,457 _05649 Position (kb) 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1at 365.333 kb on + strand, within MPMX19_05644at 365.333 kb on + strand, within MPMX19_05644at 365.333 kb on + strand, within MPMX19_05644at 365.333 kb on + strand, within MPMX19_05644at 365.333 kb on + strand, within MPMX19_05644at 365.333 kb on + strand, within MPMX19_05644at 365.333 kb on - strand, within MPMX19_05644at 365.334 kb on - strand, within MPMX19_05644at 365.334 kb on - strand, within MPMX19_05644at 365.334 kb on - strand, within MPMX19_05644at 365.334 kb on - strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.357 kb on + strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.358 kb on - strand, within MPMX19_05644at 365.402 kb on + strand, within MPMX19_05644at 365.414 kb on + strand, within MPMX19_05644at 365.414 kb on + strand, within MPMX19_05644at 365.414 kb on + strand, within MPMX19_05644at 365.415 kb on - strand, within MPMX19_05644at 365.415 kb on - strand, within MPMX19_05644at 365.415 kb on - strand, within MPMX19_05644at 365.415 kb on - strand, within MPMX19_05644at 365.415 kb on - strand, within MPMX19_05644at 365.483 kb on + strand, within MPMX19_05644at 365.483 kb on + strand, within MPMX19_05644at 365.483 kb on + strand, within MPMX19_05644at 365.483 kb on + strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.484 kb on - strand, within MPMX19_05644at 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.789 kb on + strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.790 kb on - strandat 365.819 kb on + strandat 365.819 kb on + strandat 365.819 kb on + strandat 365.859 kb on + strandat 365.859 kb on + strandat 365.860 kb on - strandat 365.860 kb on - strandat 365.877 kb on + strandat 365.877 kb on + strandat 365.877 kb on + strandat 365.877 kb on + strandat 365.877 kb on + strandat 365.877 kb on + strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.878 kb on - strandat 365.957 kb on + strand, within MPMX19_05645at 365.957 kb on + strand, within MPMX19_05645at 365.957 kb on + strand, within MPMX19_05645at 366.061 kb on - strandat 366.411 kb on + strand, within MPMX19_05647at 366.412 kb on - strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.551 kb on + strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.552 kb on - strand, within MPMX19_05647at 366.677 kb on + strand, within MPMX19_05647at 366.677 kb on + strand, within MPMX19_05647at 366.678 kb on - strand, within MPMX19_05647at 366.854 kb on + strandat 366.854 kb on + strandat 366.855 kb on - strandat 367.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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365,333 + MPMX19_05644 0.54 +1.2
365,333 + MPMX19_05644 0.54 +0.0
365,333 + MPMX19_05644 0.54 -0.4
365,333 + MPMX19_05644 0.54 +0.7
365,333 + MPMX19_05644 0.54 +0.4
365,333 + MPMX19_05644 0.54 +0.9
365,333 - MPMX19_05644 0.54 -0.1
365,334 - MPMX19_05644 0.54 +1.4
365,334 - MPMX19_05644 0.54 -0.5
365,334 - MPMX19_05644 0.54 +0.1
365,334 - MPMX19_05644 0.54 -0.8
365,357 + MPMX19_05644 0.57 +1.0
365,357 + MPMX19_05644 0.57 -0.7
365,357 + MPMX19_05644 0.57 -1.7
365,357 + MPMX19_05644 0.57 +0.9
365,357 + MPMX19_05644 0.57 +1.6
365,357 + MPMX19_05644 0.57 +0.9
365,357 + MPMX19_05644 0.57 +0.2
365,357 + MPMX19_05644 0.57 +0.2
365,358 - MPMX19_05644 0.57 +0.0
365,358 - MPMX19_05644 0.57 +0.3
365,358 - MPMX19_05644 0.57 -1.9
365,358 - MPMX19_05644 0.57 -0.4
365,358 - MPMX19_05644 0.57 -0.5
365,358 - MPMX19_05644 0.57 +0.1
365,358 - MPMX19_05644 0.57 -0.6
365,358 - MPMX19_05644 0.57 +0.3
365,358 - MPMX19_05644 0.57 -0.3
365,358 - MPMX19_05644 0.57 -0.6
365,358 - MPMX19_05644 0.57 +0.2
365,358 - MPMX19_05644 0.57 -0.2
365,358 - MPMX19_05644 0.57 +0.7
365,402 + MPMX19_05644 0.63 +0.4
365,414 + MPMX19_05644 0.64 -0.2
365,414 + MPMX19_05644 0.64 +0.1
365,414 + MPMX19_05644 0.64 +0.3
365,415 - MPMX19_05644 0.65 +1.6
365,415 - MPMX19_05644 0.65 +0.0
365,415 - MPMX19_05644 0.65 +0.6
365,415 - MPMX19_05644 0.65 -0.5
365,415 - MPMX19_05644 0.65 +0.0
365,483 + MPMX19_05644 0.74 -1.7
365,483 + MPMX19_05644 0.74 -1.4
365,483 + MPMX19_05644 0.74 -1.1
365,483 + MPMX19_05644 0.74 +0.3
365,484 - MPMX19_05644 0.74 +0.1
365,484 - MPMX19_05644 0.74 -0.3
365,484 - MPMX19_05644 0.74 -1.9
365,484 - MPMX19_05644 0.74 +1.2
365,484 - MPMX19_05644 0.74 +1.3
365,484 - MPMX19_05644 0.74 -0.4
365,484 - MPMX19_05644 0.74 -0.5
365,484 - MPMX19_05644 0.74 -0.2
365,484 - MPMX19_05644 0.74 -1.9
365,484 - MPMX19_05644 0.74 +0.4
365,789 + -0.6
365,789 + +0.7
365,789 + -0.7
365,789 + +1.2
365,789 + +0.2
365,789 + +0.3
365,789 + -0.7
365,789 + -1.6
365,789 + -0.1
365,790 - -0.9
365,790 - -0.2
365,790 - +0.3
365,790 - -1.6
365,790 - +0.4
365,790 - -0.3
365,790 - +0.7
365,790 - -0.3
365,790 - -0.9
365,790 - +0.1
365,790 - +0.0
365,790 - +0.3
365,819 + +0.5
365,819 + +0.6
365,819 + +0.0
365,859 + +0.0
365,859 + -1.1
365,860 - +0.0
365,860 - +0.7
365,877 + -0.6
365,877 + -1.6
365,877 + -0.3
365,877 + -0.7
365,877 + -0.7
365,877 + -0.7
365,878 - -0.3
365,878 - +0.3
365,878 - -2.0
365,878 - -1.1
365,878 - -0.4
365,878 - -0.2
365,878 - -0.6
365,878 - -0.2
365,878 - -0.4
365,878 - -1.0
365,957 + MPMX19_05645 0.88 -0.4
365,957 + MPMX19_05645 0.88 -1.0
365,957 + MPMX19_05645 0.88 -1.1
366,061 - -0.7
366,411 + MPMX19_05647 0.26 -0.7
366,412 - MPMX19_05647 0.26 -0.9
366,551 + MPMX19_05647 0.50 +0.5
366,551 + MPMX19_05647 0.50 -0.5
366,551 + MPMX19_05647 0.50 -0.4
366,551 + MPMX19_05647 0.50 -1.7
366,551 + MPMX19_05647 0.50 -0.8
366,551 + MPMX19_05647 0.50 -0.2
366,551 + MPMX19_05647 0.50 +0.4
366,551 + MPMX19_05647 0.50 -0.8
366,551 + MPMX19_05647 0.50 -0.8
366,551 + MPMX19_05647 0.50 -0.8
366,551 + MPMX19_05647 0.50 +0.4
366,552 - MPMX19_05647 0.50 +1.2
366,552 - MPMX19_05647 0.50 +0.4
366,552 - MPMX19_05647 0.50 -1.4
366,552 - MPMX19_05647 0.50 +0.1
366,552 - MPMX19_05647 0.50 -3.0
366,552 - MPMX19_05647 0.50 -0.7
366,552 - MPMX19_05647 0.50 -1.9
366,677 + MPMX19_05647 0.72 -1.7
366,677 + MPMX19_05647 0.72 +0.0
366,678 - MPMX19_05647 0.72 -0.0
366,854 + -1.9
366,854 + +0.7
366,855 - -1.9
367,300 - +0.7

Or see this region's nucleotide sequence