Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05641

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05640 and MPMX19_05641 are separated by 7 nucleotidesMPMX19_05641 and MPMX19_05642 are separated by 167 nucleotidesMPMX19_05642 and MPMX19_05643 overlap by 8 nucleotides MPMX19_05640: MPMX19_05640 - hypothetical protein, at 362,319 to 363,110 _05640 MPMX19_05641: MPMX19_05641 - hypothetical protein, at 363,118 to 363,531 _05641 MPMX19_05642: MPMX19_05642 - hypothetical protein, at 363,699 to 364,277 _05642 MPMX19_05643: MPMX19_05643 - hypothetical protein, at 364,270 to 364,833 _05643 Position (kb) 363 364Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 362.228 kb on + strandat 362.228 kb on + strandat 362.228 kb on + strandat 362.229 kb on - strandat 362.517 kb on + strand, within MPMX19_05640at 362.517 kb on + strand, within MPMX19_05640at 362.517 kb on + strand, within MPMX19_05640at 362.518 kb on - strand, within MPMX19_05640at 362.535 kb on + strand, within MPMX19_05640at 362.535 kb on + strand, within MPMX19_05640at 362.535 kb on + strand, within MPMX19_05640at 362.535 kb on + strand, within MPMX19_05640at 362.535 kb on + strand, within MPMX19_05640at 362.535 kb on + strand, within MPMX19_05640at 362.536 kb on - strand, within MPMX19_05640at 362.536 kb on - strand, within MPMX19_05640at 362.536 kb on - strand, within MPMX19_05640at 362.536 kb on - strand, within MPMX19_05640at 362.536 kb on - strand, within MPMX19_05640at 362.536 kb on - strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.538 kb on + strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.539 kb on - strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.736 kb on + strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.737 kb on - strand, within MPMX19_05640at 362.761 kb on - strand, within MPMX19_05640at 362.761 kb on - strand, within MPMX19_05640at 362.943 kb on + strand, within MPMX19_05640at 362.943 kb on + strand, within MPMX19_05640at 362.943 kb on + strand, within MPMX19_05640at 362.943 kb on + strand, within MPMX19_05640at 362.943 kb on + strand, within MPMX19_05640at 362.943 kb on + strand, within MPMX19_05640at 362.944 kb on - strand, within MPMX19_05640at 362.944 kb on - strand, within MPMX19_05640at 362.944 kb on - strand, within MPMX19_05640at 362.944 kb on - strand, within MPMX19_05640at 362.944 kb on - strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.994 kb on + strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 362.995 kb on - strand, within MPMX19_05640at 363.003 kb on + strand, within MPMX19_05640at 363.003 kb on + strand, within MPMX19_05640at 363.003 kb on + strand, within MPMX19_05640at 363.004 kb on - strand, within MPMX19_05640at 363.004 kb on - strand, within MPMX19_05640at 363.119 kb on + strandat 363.119 kb on + strandat 363.119 kb on + strandat 363.120 kb on - strandat 363.120 kb on - strandat 363.120 kb on - strandat 363.120 kb on - strandat 363.120 kb on - strandat 363.120 kb on - strandat 363.120 kb on - strandat 363.639 kb on + strandat 363.639 kb on + strandat 363.639 kb on + strandat 363.640 kb on - strandat 363.640 kb on - strandat 363.930 kb on + strand, within MPMX19_05642at 363.930 kb on + strand, within MPMX19_05642at 363.930 kb on + strand, within MPMX19_05642at 363.931 kb on - strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.978 kb on + strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 363.979 kb on - strand, within MPMX19_05642at 364.014 kb on + strand, within MPMX19_05642at 364.014 kb on + strand, within MPMX19_05642at 364.014 kb on + strand, within MPMX19_05642at 364.014 kb on + strand, within MPMX19_05642at 364.014 kb on + strand, within MPMX19_05642at 364.015 kb on - strand, within MPMX19_05642at 364.015 kb on - strand, within MPMX19_05642at 364.015 kb on - strand, within MPMX19_05642at 364.477 kb on + strand, within MPMX19_05643at 364.477 kb on + strand, within MPMX19_05643at 364.477 kb on + strand, within MPMX19_05643at 364.477 kb on + strand, within MPMX19_05643at 364.477 kb on + strand, within MPMX19_05643at 364.477 kb on + strand, within MPMX19_05643at 364.478 kb on - strand, within MPMX19_05643at 364.478 kb on - strand, within MPMX19_05643at 364.478 kb on - strand, within MPMX19_05643at 364.478 kb on - strand, within MPMX19_05643at 364.478 kb on - strand, within MPMX19_05643at 364.478 kb on - strand, within MPMX19_05643

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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362,228 + -2.6
362,228 + -2.0
362,228 + -0.6
362,229 - -0.7
362,517 + MPMX19_05640 0.25 +1.6
362,517 + MPMX19_05640 0.25 -1.1
362,517 + MPMX19_05640 0.25 -0.1
362,518 - MPMX19_05640 0.25 +0.6
362,535 + MPMX19_05640 0.27 -1.7
362,535 + MPMX19_05640 0.27 +0.9
362,535 + MPMX19_05640 0.27 -0.9
362,535 + MPMX19_05640 0.27 -1.7
362,535 + MPMX19_05640 0.27 +0.1
362,535 + MPMX19_05640 0.27 -0.4
362,536 - MPMX19_05640 0.27 +0.8
362,536 - MPMX19_05640 0.27 -0.8
362,536 - MPMX19_05640 0.27 +0.2
362,536 - MPMX19_05640 0.27 +0.1
362,536 - MPMX19_05640 0.27 +0.3
362,536 - MPMX19_05640 0.27 +0.6
362,538 + MPMX19_05640 0.28 +0.1
362,538 + MPMX19_05640 0.28 +0.9
362,538 + MPMX19_05640 0.28 +1.0
362,538 + MPMX19_05640 0.28 -1.0
362,538 + MPMX19_05640 0.28 +0.2
362,538 + MPMX19_05640 0.28 +0.6
362,538 + MPMX19_05640 0.28 +2.6
362,538 + MPMX19_05640 0.28 -0.7
362,538 + MPMX19_05640 0.28 +0.4
362,538 + MPMX19_05640 0.28 +0.1
362,538 + MPMX19_05640 0.28 -0.2
362,538 + MPMX19_05640 0.28 +0.4
362,538 + MPMX19_05640 0.28 +1.8
362,538 + MPMX19_05640 0.28 -1.4
362,538 + MPMX19_05640 0.28 -0.3
362,538 + MPMX19_05640 0.28 +0.6
362,538 + MPMX19_05640 0.28 -0.2
362,538 + MPMX19_05640 0.28 -1.0
362,538 + MPMX19_05640 0.28 +1.1
362,538 + MPMX19_05640 0.28 -1.4
362,538 + MPMX19_05640 0.28 +2.0
362,538 + MPMX19_05640 0.28 -1.3
362,538 + MPMX19_05640 0.28 -1.2
362,538 + MPMX19_05640 0.28 +0.8
362,538 + MPMX19_05640 0.28 -1.6
362,538 + MPMX19_05640 0.28 -0.6
362,539 - MPMX19_05640 0.28 +0.6
362,539 - MPMX19_05640 0.28 -0.3
362,539 - MPMX19_05640 0.28 +0.4
362,539 - MPMX19_05640 0.28 +0.4
362,539 - MPMX19_05640 0.28 +0.0
362,539 - MPMX19_05640 0.28 +0.6
362,539 - MPMX19_05640 0.28 +1.4
362,539 - MPMX19_05640 0.28 -0.6
362,539 - MPMX19_05640 0.28 -2.2
362,539 - MPMX19_05640 0.28 +0.5
362,539 - MPMX19_05640 0.28 +0.1
362,539 - MPMX19_05640 0.28 +1.2
362,539 - MPMX19_05640 0.28 -0.5
362,539 - MPMX19_05640 0.28 -0.8
362,539 - MPMX19_05640 0.28 -0.2
362,539 - MPMX19_05640 0.28 -2.4
362,539 - MPMX19_05640 0.28 -0.1
362,539 - MPMX19_05640 0.28 -0.7
362,539 - MPMX19_05640 0.28 -0.1
362,736 + MPMX19_05640 0.53 -0.6
362,736 + MPMX19_05640 0.53 -1.9
362,736 + MPMX19_05640 0.53 -1.6
362,736 + MPMX19_05640 0.53 +0.0
362,736 + MPMX19_05640 0.53 -0.4
362,736 + MPMX19_05640 0.53 +0.2
362,736 + MPMX19_05640 0.53 -0.1
362,736 + MPMX19_05640 0.53 -0.6
362,736 + MPMX19_05640 0.53 +0.8
362,736 + MPMX19_05640 0.53 +3.9
362,736 + MPMX19_05640 0.53 -0.2
362,736 + MPMX19_05640 0.53 +1.4
362,736 + MPMX19_05640 0.53 -0.4
362,736 + MPMX19_05640 0.53 -0.4
362,736 + MPMX19_05640 0.53 +0.3
362,736 + MPMX19_05640 0.53 -0.1
362,736 + MPMX19_05640 0.53 -1.4
362,736 + MPMX19_05640 0.53 +1.2
362,736 + MPMX19_05640 0.53 +0.4
362,736 + MPMX19_05640 0.53 -1.1
362,736 + MPMX19_05640 0.53 +0.0
362,736 + MPMX19_05640 0.53 +1.3
362,736 + MPMX19_05640 0.53 -0.6
362,737 - MPMX19_05640 0.53 -1.3
362,737 - MPMX19_05640 0.53 +0.3
362,737 - MPMX19_05640 0.53 +0.5
362,737 - MPMX19_05640 0.53 +0.0
362,737 - MPMX19_05640 0.53 -0.5
362,737 - MPMX19_05640 0.53 -0.5
362,737 - MPMX19_05640 0.53 -1.3
362,737 - MPMX19_05640 0.53 -0.1
362,737 - MPMX19_05640 0.53 -0.3
362,737 - MPMX19_05640 0.53 +2.2
362,737 - MPMX19_05640 0.53 -0.2
362,737 - MPMX19_05640 0.53 -1.2
362,737 - MPMX19_05640 0.53 +0.9
362,737 - MPMX19_05640 0.53 -0.5
362,737 - MPMX19_05640 0.53 +1.2
362,737 - MPMX19_05640 0.53 -0.3
362,737 - MPMX19_05640 0.53 -1.7
362,737 - MPMX19_05640 0.53 +0.2
362,737 - MPMX19_05640 0.53 +0.0
362,737 - MPMX19_05640 0.53 +0.0
362,737 - MPMX19_05640 0.53 -1.1
362,737 - MPMX19_05640 0.53 -0.1
362,737 - MPMX19_05640 0.53 -0.4
362,761 - MPMX19_05640 0.56 -1.6
362,761 - MPMX19_05640 0.56 +0.2
362,943 + MPMX19_05640 0.79 -0.1
362,943 + MPMX19_05640 0.79 -0.1
362,943 + MPMX19_05640 0.79 -2.7
362,943 + MPMX19_05640 0.79 +0.2
362,943 + MPMX19_05640 0.79 -0.8
362,943 + MPMX19_05640 0.79 +0.6
362,944 - MPMX19_05640 0.79 +0.3
362,944 - MPMX19_05640 0.79 +0.0
362,944 - MPMX19_05640 0.79 -0.9
362,944 - MPMX19_05640 0.79 +0.4
362,944 - MPMX19_05640 0.79 +1.1
362,994 + MPMX19_05640 0.85 +0.3
362,994 + MPMX19_05640 0.85 +0.1
362,994 + MPMX19_05640 0.85 -0.1
362,994 + MPMX19_05640 0.85 -1.7
362,994 + MPMX19_05640 0.85 +1.6
362,994 + MPMX19_05640 0.85 +0.1
362,994 + MPMX19_05640 0.85 +0.0
362,994 + MPMX19_05640 0.85 -1.0
362,994 + MPMX19_05640 0.85 -0.1
362,995 - MPMX19_05640 0.85 +1.6
362,995 - MPMX19_05640 0.85 -1.4
362,995 - MPMX19_05640 0.85 -2.2
362,995 - MPMX19_05640 0.85 +0.2
362,995 - MPMX19_05640 0.85 -1.6
362,995 - MPMX19_05640 0.85 -0.8
362,995 - MPMX19_05640 0.85 -0.1
362,995 - MPMX19_05640 0.85 +0.0
362,995 - MPMX19_05640 0.85 -0.6
362,995 - MPMX19_05640 0.85 +0.4
362,995 - MPMX19_05640 0.85 +2.0
362,995 - MPMX19_05640 0.85 -0.6
363,003 + MPMX19_05640 0.86 -0.1
363,003 + MPMX19_05640 0.86 +0.0
363,003 + MPMX19_05640 0.86 +0.1
363,004 - MPMX19_05640 0.86 +0.3
363,004 - MPMX19_05640 0.86 -0.2
363,119 + -0.1
363,119 + -0.1
363,119 + -1.5
363,120 - +0.2
363,120 - -1.2
363,120 - +0.4
363,120 - +1.9
363,120 - +0.4
363,120 - -2.1
363,120 - -2.0
363,639 + +0.8
363,639 + -1.2
363,639 + -0.7
363,640 - -0.1
363,640 - +0.6
363,930 + MPMX19_05642 0.40 -0.2
363,930 + MPMX19_05642 0.40 +1.0
363,930 + MPMX19_05642 0.40 +0.7
363,931 - MPMX19_05642 0.40 -0.2
363,978 + MPMX19_05642 0.48 +0.5
363,978 + MPMX19_05642 0.48 +0.2
363,978 + MPMX19_05642 0.48 +0.1
363,978 + MPMX19_05642 0.48 +1.2
363,978 + MPMX19_05642 0.48 +0.1
363,978 + MPMX19_05642 0.48 +0.5
363,978 + MPMX19_05642 0.48 -0.2
363,978 + MPMX19_05642 0.48 -0.6
363,978 + MPMX19_05642 0.48 +1.2
363,978 + MPMX19_05642 0.48 +0.0
363,978 + MPMX19_05642 0.48 -0.9
363,978 + MPMX19_05642 0.48 -1.3
363,978 + MPMX19_05642 0.48 -0.7
363,978 + MPMX19_05642 0.48 -0.7
363,978 + MPMX19_05642 0.48 +0.1
363,978 + MPMX19_05642 0.48 +0.4
363,978 + MPMX19_05642 0.48 +0.3
363,979 - MPMX19_05642 0.48 -1.9
363,979 - MPMX19_05642 0.48 -1.0
363,979 - MPMX19_05642 0.48 -1.7
363,979 - MPMX19_05642 0.48 +0.0
363,979 - MPMX19_05642 0.48 +1.9
363,979 - MPMX19_05642 0.48 -1.2
363,979 - MPMX19_05642 0.48 +0.8
363,979 - MPMX19_05642 0.48 +0.3
363,979 - MPMX19_05642 0.48 -2.2
363,979 - MPMX19_05642 0.48 -0.6
363,979 - MPMX19_05642 0.48 +2.0
363,979 - MPMX19_05642 0.48 +0.4
363,979 - MPMX19_05642 0.48 -0.7
364,014 + MPMX19_05642 0.54 +0.3
364,014 + MPMX19_05642 0.54 +0.0
364,014 + MPMX19_05642 0.54 +1.0
364,014 + MPMX19_05642 0.54 +0.0
364,014 + MPMX19_05642 0.54 -1.2
364,015 - MPMX19_05642 0.55 +1.1
364,015 - MPMX19_05642 0.55 +1.3
364,015 - MPMX19_05642 0.55 -1.1
364,477 + MPMX19_05643 0.37 -0.6
364,477 + MPMX19_05643 0.37 +0.4
364,477 + MPMX19_05643 0.37 +0.6
364,477 + MPMX19_05643 0.37 -2.2
364,477 + MPMX19_05643 0.37 -0.7
364,477 + MPMX19_05643 0.37 -0.9
364,478 - MPMX19_05643 0.37 -0.8
364,478 - MPMX19_05643 0.37 -0.3
364,478 - MPMX19_05643 0.37 -0.7
364,478 - MPMX19_05643 0.37 +1.6
364,478 - MPMX19_05643 0.37 -0.4
364,478 - MPMX19_05643 0.37 +0.4

Or see this region's nucleotide sequence