Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05547 and MPMX19_05548 overlap by 23 nucleotides MPMX19_05548 and MPMX19_05549 are separated by 42 nucleotides MPMX19_05549 and MPMX19_05550 overlap by 4 nucleotides
MPMX19_05547: MPMX19_05547 - Methionine import ATP-binding protein MetN, at 252,889 to 253,941
_05547
MPMX19_05548: MPMX19_05548 - D-methionine transport system permease protein MetI, at 253,919 to 254,587
_05548
MPMX19_05549: MPMX19_05549 - D-methionine-binding lipoprotein MetQ, at 254,630 to 255,421
_05549
MPMX19_05550: MPMX19_05550 - Photosystem I assembly protein Ycf3, at 255,418 to 259,158
_05550
Position (kb)
253
254
255 Strain fitness (log2 ratio)
-2
-1
0
1 at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 253.002 kb on + strand, within MPMX19_05547 at 253.003 kb on - strand, within MPMX19_05547 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.133 kb on + strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.134 kb on - strand, within MPMX19_05548 at 254.462 kb on + strand, within MPMX19_05548 at 254.463 kb on - strand, within MPMX19_05548 at 254.463 kb on - strand, within MPMX19_05548 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.816 kb on + strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.817 kb on - strand, within MPMX19_05549 at 254.882 kb on + strand, within MPMX19_05549 at 254.882 kb on + strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.883 kb on - strand, within MPMX19_05549 at 254.945 kb on + strand, within MPMX19_05549 at 254.946 kb on - strand, within MPMX19_05549 at 254.946 kb on - strand, within MPMX19_05549 at 254.946 kb on - strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.960 kb on + strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 254.961 kb on - strand, within MPMX19_05549 at 255.284 kb on + strand, within MPMX19_05549 at 255.284 kb on + strand, within MPMX19_05549 at 255.284 kb on + strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.285 kb on - strand, within MPMX19_05549 at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.353 kb on + strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.354 kb on - strand at 255.419 kb on + strand at 255.419 kb on + strand at 255.419 kb on + strand at 255.420 kb on - strand at 255.420 kb on - strand at 255.420 kb on - strand at 255.420 kb on - strand at 255.521 kb on + strand at 255.521 kb on + strand at 255.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 252,919 + -0.0 252,919 + +0.2 252,919 + -0.7 252,919 + -1.0 252,919 + +0.2 252,919 + -0.6 252,919 + -0.3 252,919 + -1.0 252,919 + +0.1 252,919 + +0.1 252,920 - -1.5 252,920 - +1.4 252,920 - -0.9 252,920 - +0.2 252,920 - -0.9 252,920 - -0.2 252,920 - -2.0 252,920 - -0.3 252,920 - -1.2 252,920 - +1.2 253,002 + MPMX19_05547 0.11 -1.7 253,003 - MPMX19_05547 0.11 -1.0 254,133 + MPMX19_05548 0.32 +0.0 254,133 + MPMX19_05548 0.32 +0.2 254,133 + MPMX19_05548 0.32 +0.2 254,133 + MPMX19_05548 0.32 +0.4 254,133 + MPMX19_05548 0.32 +0.6 254,133 + MPMX19_05548 0.32 +1.6 254,133 + MPMX19_05548 0.32 -1.8 254,133 + MPMX19_05548 0.32 +1.6 254,133 + MPMX19_05548 0.32 -0.7 254,134 - MPMX19_05548 0.32 +0.7 254,134 - MPMX19_05548 0.32 +0.9 254,134 - MPMX19_05548 0.32 +0.2 254,134 - MPMX19_05548 0.32 -0.4 254,134 - MPMX19_05548 0.32 +1.1 254,134 - MPMX19_05548 0.32 +0.9 254,462 + MPMX19_05548 0.81 -1.5 254,463 - MPMX19_05548 0.81 -0.1 254,463 - MPMX19_05548 0.81 +0.3 254,816 + MPMX19_05549 0.23 -0.7 254,816 + MPMX19_05549 0.23 +0.3 254,816 + MPMX19_05549 0.23 -2.4 254,816 + MPMX19_05549 0.23 -0.3 254,816 + MPMX19_05549 0.23 -1.3 254,816 + MPMX19_05549 0.23 +0.3 254,816 + MPMX19_05549 0.23 +1.6 254,816 + MPMX19_05549 0.23 +0.4 254,816 + MPMX19_05549 0.23 -0.0 254,816 + MPMX19_05549 0.23 -0.3 254,816 + MPMX19_05549 0.23 +1.5 254,816 + MPMX19_05549 0.23 +0.6 254,816 + MPMX19_05549 0.23 -0.2 254,816 + MPMX19_05549 0.23 -2.0 254,816 + MPMX19_05549 0.23 +0.5 254,816 + MPMX19_05549 0.23 -0.1 254,816 + MPMX19_05549 0.23 -0.5 254,816 + MPMX19_05549 0.23 +0.2 254,816 + MPMX19_05549 0.23 -1.5 254,816 + MPMX19_05549 0.23 +0.3 254,816 + MPMX19_05549 0.23 +1.0 254,816 + MPMX19_05549 0.23 -0.0 254,816 + MPMX19_05549 0.23 +0.4 254,816 + MPMX19_05549 0.23 +0.6 254,816 + MPMX19_05549 0.23 -0.4 254,816 + MPMX19_05549 0.23 -0.6 254,817 - MPMX19_05549 0.24 -0.8 254,817 - MPMX19_05549 0.24 -0.2 254,817 - MPMX19_05549 0.24 +0.6 254,817 - MPMX19_05549 0.24 -0.8 254,817 - MPMX19_05549 0.24 -1.0 254,817 - MPMX19_05549 0.24 -0.3 254,817 - MPMX19_05549 0.24 -0.5 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 +0.0 254,817 - MPMX19_05549 0.24 -0.1 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 -0.2 254,817 - MPMX19_05549 0.24 -0.3 254,817 - MPMX19_05549 0.24 -0.6 254,817 - MPMX19_05549 0.24 +0.4 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 -0.4 254,817 - MPMX19_05549 0.24 +0.2 254,817 - MPMX19_05549 0.24 +0.8 254,817 - MPMX19_05549 0.24 -0.2 254,882 + MPMX19_05549 0.32 +0.6 254,882 + MPMX19_05549 0.32 +0.0 254,883 - MPMX19_05549 0.32 +0.6 254,883 - MPMX19_05549 0.32 -1.0 254,883 - MPMX19_05549 0.32 +0.0 254,883 - MPMX19_05549 0.32 -0.0 254,945 + MPMX19_05549 0.40 -0.0 254,946 - MPMX19_05549 0.40 -1.7 254,946 - MPMX19_05549 0.40 -0.4 254,946 - MPMX19_05549 0.40 -1.4 254,960 + MPMX19_05549 0.42 +0.5 254,960 + MPMX19_05549 0.42 -1.1 254,960 + MPMX19_05549 0.42 +0.2 254,960 + MPMX19_05549 0.42 +0.5 254,960 + MPMX19_05549 0.42 +0.9 254,960 + MPMX19_05549 0.42 -0.6 254,960 + MPMX19_05549 0.42 +0.4 254,960 + MPMX19_05549 0.42 -0.6 254,960 + MPMX19_05549 0.42 -0.0 254,960 + MPMX19_05549 0.42 +0.2 254,960 + MPMX19_05549 0.42 -0.1 254,960 + MPMX19_05549 0.42 +0.6 254,960 + MPMX19_05549 0.42 -0.1 254,960 + MPMX19_05549 0.42 +0.0 254,960 + MPMX19_05549 0.42 -0.4 254,960 + MPMX19_05549 0.42 +0.5 254,960 + MPMX19_05549 0.42 +0.7 254,960 + MPMX19_05549 0.42 -0.2 254,961 - MPMX19_05549 0.42 -0.4 254,961 - MPMX19_05549 0.42 -0.7 254,961 - MPMX19_05549 0.42 -0.6 254,961 - MPMX19_05549 0.42 +0.2 254,961 - MPMX19_05549 0.42 +0.3 254,961 - MPMX19_05549 0.42 +0.0 254,961 - MPMX19_05549 0.42 -0.5 255,284 + MPMX19_05549 0.83 -2.0 255,284 + MPMX19_05549 0.83 -1.0 255,284 + MPMX19_05549 0.83 -0.6 255,285 - MPMX19_05549 0.83 -1.2 255,285 - MPMX19_05549 0.83 -1.1 255,285 - MPMX19_05549 0.83 +1.1 255,285 - MPMX19_05549 0.83 -0.6 255,353 + -0.5 255,353 + -0.3 255,353 + +0.4 255,353 + -0.1 255,353 + +0.7 255,353 + +0.0 255,353 + +0.2 255,353 + +0.4 255,353 + +0.2 255,353 + -0.1 255,353 + +1.0 255,353 + -0.2 255,353 + +0.6 255,353 + -0.4 255,353 + -0.7 255,353 + -0.4 255,354 - +0.5 255,354 - -2.0 255,354 - +1.0 255,354 - -0.1 255,354 - +0.3 255,354 - -1.0 255,354 - -0.5 255,354 - -1.0 255,354 - -0.3 255,354 - -1.1 255,354 - -0.1 255,354 - -0.0 255,354 - +0.8 255,419 + +0.9 255,419 + +0.6 255,419 + -1.0 255,420 - -0.6 255,420 - +0.2 255,420 - +0.4 255,420 - -2.5 255,521 + -0.4 255,521 + -0.5 255,522 - +1.0
Or see this region's nucleotide sequence