Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05525

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05523 and MPMX19_05524 are separated by 76 nucleotidesMPMX19_05524 and MPMX19_05525 are separated by 118 nucleotidesMPMX19_05525 and MPMX19_05526 are separated by 282 nucleotides MPMX19_05523: MPMX19_05523 - Outer-membrane lipoprotein carrier protein, at 230,572 to 231,249 _05523 MPMX19_05524: MPMX19_05524 - hypothetical protein, at 231,326 to 231,961 _05524 MPMX19_05525: MPMX19_05525 - HTH-type transcriptional regulator VirS, at 232,080 to 233,141 _05525 MPMX19_05526: MPMX19_05526 - Methyl-accepting chemotaxis protein, at 233,424 to 235,109 _05526 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.332 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.332 kb on + strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.333 kb on - strandat 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.506 kb on + strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.507 kb on - strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.845 kb on + strand, within MPMX19_05524at 231.846 kb on - strand, within MPMX19_05524at 231.846 kb on - strand, within MPMX19_05524at 231.846 kb on - strand, within MPMX19_05524at 231.979 kb on + strandat 232.002 kb on + strandat 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.293 kb on + strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.294 kb on - strand, within MPMX19_05525at 232.518 kb on + strand, within MPMX19_05525at 232.519 kb on - strand, within MPMX19_05525at 232.519 kb on - strand, within MPMX19_05525at 232.890 kb on + strand, within MPMX19_05525at 232.890 kb on + strand, within MPMX19_05525at 232.890 kb on + strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 232.891 kb on - strand, within MPMX19_05525at 233.013 kb on + strand, within MPMX19_05525at 233.013 kb on + strand, within MPMX19_05525at 233.013 kb on + strand, within MPMX19_05525at 233.013 kb on + strand, within MPMX19_05525at 233.013 kb on + strand, within MPMX19_05525at 233.013 kb on + strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.014 kb on - strand, within MPMX19_05525at 233.064 kb on + strandat 233.064 kb on + strandat 233.065 kb on - strandat 233.065 kb on - strandat 233.241 kb on + strandat 233.241 kb on + strandat 233.270 kb on + strandat 233.305 kb on + strandat 233.305 kb on + strandat 233.305 kb on + strandat 233.305 kb on + strandat 233.306 kb on - strandat 233.306 kb on - strandat 233.306 kb on - strandat 233.306 kb on - strandat 233.306 kb on - strandat 233.306 kb on - strandat 233.306 kb on - strandat 233.310 kb on + strandat 233.310 kb on + strandat 233.311 kb on - strandat 233.316 kb on + strandat 233.316 kb on + strandat 233.316 kb on + strandat 233.342 kb on - strandat 233.514 kb on - strandat 233.532 kb on - strandat 233.532 kb on - strandat 233.598 kb on + strand, within MPMX19_05526at 233.598 kb on + strand, within MPMX19_05526at 233.599 kb on - strand, within MPMX19_05526at 233.599 kb on - strand, within MPMX19_05526at 233.599 kb on - strand, within MPMX19_05526at 233.599 kb on - strand, within MPMX19_05526at 233.599 kb on - strand, within MPMX19_05526at 233.694 kb on + strand, within MPMX19_05526at 233.694 kb on + strand, within MPMX19_05526at 233.694 kb on + strand, within MPMX19_05526at 233.694 kb on + strand, within MPMX19_05526at 233.694 kb on + strand, within MPMX19_05526at 233.695 kb on - strand, within MPMX19_05526at 233.695 kb on - strand, within MPMX19_05526at 233.695 kb on - strand, within MPMX19_05526at 233.695 kb on - strand, within MPMX19_05526at 233.695 kb on - strand, within MPMX19_05526at 233.695 kb on - strand, within MPMX19_05526at 233.706 kb on + strand, within MPMX19_05526at 233.706 kb on + strand, within MPMX19_05526at 233.706 kb on + strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.707 kb on - strand, within MPMX19_05526at 233.850 kb on + strand, within MPMX19_05526at 233.850 kb on + strand, within MPMX19_05526at 233.850 kb on + strand, within MPMX19_05526at 233.850 kb on + strand, within MPMX19_05526at 233.850 kb on + strand, within MPMX19_05526at 233.850 kb on + strand, within MPMX19_05526at 233.851 kb on - strand, within MPMX19_05526at 233.851 kb on - strand, within MPMX19_05526at 233.851 kb on - strand, within MPMX19_05526at 233.851 kb on - strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.886 kb on + strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.887 kb on - strand, within MPMX19_05526at 233.901 kb on + strand, within MPMX19_05526at 233.901 kb on + strand, within MPMX19_05526at 233.902 kb on - strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.949 kb on + strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.950 kb on - strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.953 kb on + strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.954 kb on - strand, within MPMX19_05526at 233.989 kb on - strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.045 kb on + strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526at 234.046 kb on - strand, within MPMX19_05526

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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231,332 + -1.3
231,332 + +0.0
231,332 + -1.2
231,332 + -0.1
231,332 + +1.1
231,333 - -0.6
231,333 - +0.4
231,333 - -0.5
231,333 - -0.1
231,333 - -2.3
231,506 + MPMX19_05524 0.28 -0.2
231,506 + MPMX19_05524 0.28 -0.9
231,506 + MPMX19_05524 0.28 -1.5
231,506 + MPMX19_05524 0.28 -1.6
231,506 + MPMX19_05524 0.28 -0.8
231,506 + MPMX19_05524 0.28 +0.5
231,506 + MPMX19_05524 0.28 +0.7
231,507 - MPMX19_05524 0.28 -2.1
231,507 - MPMX19_05524 0.28 -0.4
231,507 - MPMX19_05524 0.28 +0.1
231,507 - MPMX19_05524 0.28 -0.5
231,507 - MPMX19_05524 0.28 +0.3
231,507 - MPMX19_05524 0.28 +0.6
231,845 + MPMX19_05524 0.82 -0.6
231,845 + MPMX19_05524 0.82 +0.6
231,845 + MPMX19_05524 0.82 -1.5
231,845 + MPMX19_05524 0.82 -1.5
231,845 + MPMX19_05524 0.82 -1.0
231,846 - MPMX19_05524 0.82 +1.0
231,846 - MPMX19_05524 0.82 +0.8
231,846 - MPMX19_05524 0.82 +0.1
231,979 + +0.3
232,002 + +0.5
232,293 + MPMX19_05525 0.20 -1.5
232,293 + MPMX19_05525 0.20 -0.3
232,293 + MPMX19_05525 0.20 +0.2
232,293 + MPMX19_05525 0.20 -1.5
232,293 + MPMX19_05525 0.20 -0.7
232,293 + MPMX19_05525 0.20 -1.8
232,293 + MPMX19_05525 0.20 +1.6
232,293 + MPMX19_05525 0.20 +1.0
232,293 + MPMX19_05525 0.20 +0.3
232,293 + MPMX19_05525 0.20 +0.2
232,293 + MPMX19_05525 0.20 +0.6
232,294 - MPMX19_05525 0.20 -0.7
232,294 - MPMX19_05525 0.20 -0.5
232,294 - MPMX19_05525 0.20 +0.2
232,294 - MPMX19_05525 0.20 -1.0
232,294 - MPMX19_05525 0.20 +0.3
232,294 - MPMX19_05525 0.20 -0.5
232,294 - MPMX19_05525 0.20 +0.7
232,294 - MPMX19_05525 0.20 +0.4
232,518 + MPMX19_05525 0.41 -1.2
232,519 - MPMX19_05525 0.41 -0.5
232,519 - MPMX19_05525 0.41 -0.3
232,890 + MPMX19_05525 0.76 -2.3
232,890 + MPMX19_05525 0.76 -0.1
232,890 + MPMX19_05525 0.76 +0.6
232,891 - MPMX19_05525 0.76 +1.0
232,891 - MPMX19_05525 0.76 -0.1
232,891 - MPMX19_05525 0.76 -0.3
232,891 - MPMX19_05525 0.76 -0.5
232,891 - MPMX19_05525 0.76 -0.5
232,891 - MPMX19_05525 0.76 +0.4
232,891 - MPMX19_05525 0.76 -0.1
232,891 - MPMX19_05525 0.76 +0.4
232,891 - MPMX19_05525 0.76 +0.8
232,891 - MPMX19_05525 0.76 -0.2
232,891 - MPMX19_05525 0.76 +0.5
233,013 + MPMX19_05525 0.88 -0.8
233,013 + MPMX19_05525 0.88 -1.3
233,013 + MPMX19_05525 0.88 -0.4
233,013 + MPMX19_05525 0.88 +0.0
233,013 + MPMX19_05525 0.88 +0.5
233,013 + MPMX19_05525 0.88 -0.0
233,014 - MPMX19_05525 0.88 -0.2
233,014 - MPMX19_05525 0.88 -0.1
233,014 - MPMX19_05525 0.88 -0.2
233,014 - MPMX19_05525 0.88 -0.4
233,014 - MPMX19_05525 0.88 -0.4
233,014 - MPMX19_05525 0.88 +0.5
233,014 - MPMX19_05525 0.88 -0.5
233,064 + -0.2
233,064 + -0.5
233,065 - -0.7
233,065 - +0.2
233,241 + -0.5
233,241 + +0.3
233,270 + -1.0
233,305 + -0.1
233,305 + -1.0
233,305 + +0.6
233,305 + -1.0
233,306 - -0.4
233,306 - +0.3
233,306 - +0.6
233,306 - -0.1
233,306 - -0.0
233,306 - -1.8
233,306 - -0.0
233,310 + +0.4
233,310 + -0.6
233,311 - -0.9
233,316 + -1.6
233,316 + -0.4
233,316 + -0.2
233,342 - -0.3
233,514 - -0.9
233,532 - +1.1
233,532 - -0.2
233,598 + MPMX19_05526 0.10 -0.4
233,598 + MPMX19_05526 0.10 -0.2
233,599 - MPMX19_05526 0.10 -0.2
233,599 - MPMX19_05526 0.10 -1.2
233,599 - MPMX19_05526 0.10 +0.0
233,599 - MPMX19_05526 0.10 -1.4
233,599 - MPMX19_05526 0.10 -1.5
233,694 + MPMX19_05526 0.16 -0.2
233,694 + MPMX19_05526 0.16 -0.2
233,694 + MPMX19_05526 0.16 -1.2
233,694 + MPMX19_05526 0.16 -1.0
233,694 + MPMX19_05526 0.16 +0.6
233,695 - MPMX19_05526 0.16 +0.5
233,695 - MPMX19_05526 0.16 +0.0
233,695 - MPMX19_05526 0.16 -0.2
233,695 - MPMX19_05526 0.16 +1.3
233,695 - MPMX19_05526 0.16 -0.6
233,695 - MPMX19_05526 0.16 -0.2
233,706 + MPMX19_05526 0.17 -2.3
233,706 + MPMX19_05526 0.17 -1.3
233,706 + MPMX19_05526 0.17 -0.8
233,707 - MPMX19_05526 0.17 -0.0
233,707 - MPMX19_05526 0.17 +0.0
233,707 - MPMX19_05526 0.17 -0.3
233,707 - MPMX19_05526 0.17 +0.2
233,707 - MPMX19_05526 0.17 +1.5
233,707 - MPMX19_05526 0.17 -0.4
233,707 - MPMX19_05526 0.17 -0.5
233,707 - MPMX19_05526 0.17 -0.2
233,850 + MPMX19_05526 0.25 -0.4
233,850 + MPMX19_05526 0.25 +0.3
233,850 + MPMX19_05526 0.25 +0.1
233,850 + MPMX19_05526 0.25 +0.6
233,850 + MPMX19_05526 0.25 -0.2
233,850 + MPMX19_05526 0.25 -1.5
233,851 - MPMX19_05526 0.25 -1.0
233,851 - MPMX19_05526 0.25 +2.6
233,851 - MPMX19_05526 0.25 -1.2
233,851 - MPMX19_05526 0.25 +0.6
233,886 + MPMX19_05526 0.27 -0.2
233,886 + MPMX19_05526 0.27 -0.5
233,886 + MPMX19_05526 0.27 -1.0
233,886 + MPMX19_05526 0.27 -0.9
233,886 + MPMX19_05526 0.27 -1.0
233,886 + MPMX19_05526 0.27 +0.5
233,886 + MPMX19_05526 0.27 +0.0
233,886 + MPMX19_05526 0.27 +0.0
233,887 - MPMX19_05526 0.27 +2.3
233,887 - MPMX19_05526 0.27 -1.0
233,887 - MPMX19_05526 0.27 -1.4
233,887 - MPMX19_05526 0.27 +0.6
233,887 - MPMX19_05526 0.27 +0.0
233,887 - MPMX19_05526 0.27 -0.1
233,887 - MPMX19_05526 0.27 -0.1
233,901 + MPMX19_05526 0.28 -1.0
233,901 + MPMX19_05526 0.28 -0.4
233,902 - MPMX19_05526 0.28 -1.2
233,949 + MPMX19_05526 0.31 -1.2
233,949 + MPMX19_05526 0.31 -0.6
233,949 + MPMX19_05526 0.31 +0.0
233,949 + MPMX19_05526 0.31 -1.6
233,949 + MPMX19_05526 0.31 -1.8
233,949 + MPMX19_05526 0.31 +0.1
233,949 + MPMX19_05526 0.31 -0.9
233,949 + MPMX19_05526 0.31 -1.7
233,949 + MPMX19_05526 0.31 +1.6
233,949 + MPMX19_05526 0.31 +0.2
233,949 + MPMX19_05526 0.31 +0.2
233,949 + MPMX19_05526 0.31 -2.2
233,949 + MPMX19_05526 0.31 -1.2
233,949 + MPMX19_05526 0.31 -0.9
233,949 + MPMX19_05526 0.31 +0.3
233,949 + MPMX19_05526 0.31 -0.4
233,950 - MPMX19_05526 0.31 -0.4
233,950 - MPMX19_05526 0.31 +0.6
233,950 - MPMX19_05526 0.31 +0.3
233,950 - MPMX19_05526 0.31 -1.0
233,950 - MPMX19_05526 0.31 +1.9
233,950 - MPMX19_05526 0.31 -0.4
233,950 - MPMX19_05526 0.31 -1.2
233,950 - MPMX19_05526 0.31 -2.0
233,950 - MPMX19_05526 0.31 +0.8
233,950 - MPMX19_05526 0.31 -1.0
233,950 - MPMX19_05526 0.31 +0.2
233,950 - MPMX19_05526 0.31 +0.7
233,950 - MPMX19_05526 0.31 +0.4
233,953 + MPMX19_05526 0.31 -0.4
233,953 + MPMX19_05526 0.31 +0.6
233,953 + MPMX19_05526 0.31 -1.8
233,953 + MPMX19_05526 0.31 -2.5
233,953 + MPMX19_05526 0.31 -2.3
233,953 + MPMX19_05526 0.31 +0.3
233,953 + MPMX19_05526 0.31 -1.5
233,953 + MPMX19_05526 0.31 +0.3
233,953 + MPMX19_05526 0.31 -1.0
233,954 - MPMX19_05526 0.31 -0.4
233,954 - MPMX19_05526 0.31 -1.5
233,954 - MPMX19_05526 0.31 +0.3
233,954 - MPMX19_05526 0.31 -0.5
233,954 - MPMX19_05526 0.31 -0.4
233,954 - MPMX19_05526 0.31 -1.5
233,954 - MPMX19_05526 0.31 -2.4
233,954 - MPMX19_05526 0.31 +0.7
233,954 - MPMX19_05526 0.31 -0.2
233,989 - MPMX19_05526 0.34 +1.2
234,045 + MPMX19_05526 0.37 +1.3
234,045 + MPMX19_05526 0.37 +0.0
234,045 + MPMX19_05526 0.37 +0.2
234,045 + MPMX19_05526 0.37 -0.5
234,045 + MPMX19_05526 0.37 -0.7
234,045 + MPMX19_05526 0.37 -0.1
234,045 + MPMX19_05526 0.37 -0.4
234,045 + MPMX19_05526 0.37 -0.4
234,045 + MPMX19_05526 0.37 +0.9
234,046 - MPMX19_05526 0.37 +1.0
234,046 - MPMX19_05526 0.37 +0.4
234,046 - MPMX19_05526 0.37 +1.0
234,046 - MPMX19_05526 0.37 -0.0
234,046 - MPMX19_05526 0.37 -0.6
234,046 - MPMX19_05526 0.37 -0.5
234,046 - MPMX19_05526 0.37 -0.4
234,046 - MPMX19_05526 0.37 -0.8
234,046 - MPMX19_05526 0.37 -1.0

Or see this region's nucleotide sequence