Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05511

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05509 and MPMX19_05510 are separated by 103 nucleotidesMPMX19_05510 and MPMX19_05511 are separated by 94 nucleotidesMPMX19_05511 and MPMX19_05512 are separated by 373 nucleotides MPMX19_05509: MPMX19_05509 - hypothetical protein, at 215,904 to 216,155 _05509 MPMX19_05510: MPMX19_05510 - hypothetical protein, at 216,259 to 216,549 _05510 MPMX19_05511: MPMX19_05511 - hypothetical protein, at 216,644 to 216,892 _05511 MPMX19_05512: MPMX19_05512 - Homoserine/homoserine lactone efflux protein, at 217,266 to 217,892 _05512 Position (kb) 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.699 kb on + strandat 215.772 kb on + strandat 215.772 kb on + strandat 215.773 kb on - strandat 215.816 kb on + strandat 215.816 kb on + strandat 215.816 kb on + strandat 215.817 kb on - strandat 215.817 kb on - strandat 215.835 kb on + strandat 215.836 kb on + strandat 215.836 kb on + strandat 215.836 kb on + strandat 215.837 kb on - strandat 215.837 kb on - strandat 215.837 kb on - strandat 215.919 kb on + strandat 215.919 kb on + strandat 215.919 kb on + strandat 215.919 kb on + strandat 215.920 kb on - strandat 215.920 kb on - strandat 215.920 kb on - strandat 215.920 kb on - strandat 215.920 kb on - strandat 215.920 kb on - strandat 215.920 kb on - strandat 216.229 kb on + strandat 216.229 kb on + strandat 216.229 kb on + strandat 216.229 kb on + strandat 216.229 kb on + strandat 216.230 kb on - strandat 216.230 kb on - strandat 216.525 kb on + strandat 216.526 kb on - strandat 216.652 kb on - strandat 216.652 kb on - strandat 216.744 kb on + strand, within MPMX19_05511at 216.744 kb on + strand, within MPMX19_05511at 216.744 kb on + strand, within MPMX19_05511at 216.744 kb on + strand, within MPMX19_05511at 216.745 kb on - strand, within MPMX19_05511at 216.745 kb on - strand, within MPMX19_05511at 216.745 kb on - strand, within MPMX19_05511at 216.865 kb on + strand, within MPMX19_05511at 216.865 kb on + strand, within MPMX19_05511at 216.865 kb on + strand, within MPMX19_05511at 216.866 kb on - strand, within MPMX19_05511at 216.866 kb on - strand, within MPMX19_05511at 216.866 kb on - strand, within MPMX19_05511at 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.077 kb on + strandat 217.243 kb on + strandat 217.244 kb on - strandat 217.244 kb on - strandat 217.249 kb on + strandat 217.249 kb on + strandat 217.249 kb on + strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.518 kb on + strand, within MPMX19_05512at 217.518 kb on + strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.761 kb on + strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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215,699 + -0.6
215,772 + -0.8
215,772 + -2.5
215,773 - +0.2
215,816 + -1.0
215,816 + +0.5
215,816 + -1.0
215,817 - +0.1
215,817 - -0.2
215,835 + -0.5
215,836 + +0.4
215,836 + -0.8
215,836 + +1.8
215,837 - -0.2
215,837 - -0.8
215,837 - -0.7
215,919 + +1.1
215,919 + -0.9
215,919 + -0.4
215,919 + -0.4
215,920 - +0.1
215,920 - +0.5
215,920 - -0.2
215,920 - -2.2
215,920 - -0.9
215,920 - -1.4
215,920 - -1.4
216,229 + -0.5
216,229 + -0.7
216,229 + -0.2
216,229 + -0.9
216,229 + -0.8
216,230 - +0.6
216,230 - -0.3
216,525 + +1.3
216,526 - -3.0
216,652 - +1.8
216,652 - +2.0
216,744 + MPMX19_05511 0.40 -0.3
216,744 + MPMX19_05511 0.40 -1.5
216,744 + MPMX19_05511 0.40 -0.5
216,744 + MPMX19_05511 0.40 -1.1
216,745 - MPMX19_05511 0.41 +0.9
216,745 - MPMX19_05511 0.41 +0.3
216,745 - MPMX19_05511 0.41 -0.3
216,865 + MPMX19_05511 0.89 -1.0
216,865 + MPMX19_05511 0.89 -1.4
216,865 + MPMX19_05511 0.89 -0.8
216,866 - MPMX19_05511 0.89 +0.0
216,866 - MPMX19_05511 0.89 -0.7
216,866 - MPMX19_05511 0.89 -1.6
217,062 + +0.1
217,062 + +0.5
217,062 + -0.4
217,062 + -0.4
217,062 + -0.9
217,062 + +0.9
217,063 - -0.7
217,063 - -0.7
217,063 - -0.0
217,063 - -0.6
217,063 - -0.3
217,077 + -0.7
217,243 + +0.6
217,244 - +0.3
217,244 - -2.4
217,249 + -0.7
217,249 + +0.3
217,249 + +0.3
217,250 - -2.1
217,250 - +0.6
217,250 - -0.2
217,250 - +0.5
217,250 - -0.2
217,353 + MPMX19_05512 0.14 -0.5
217,353 + MPMX19_05512 0.14 -0.7
217,353 + MPMX19_05512 0.14 -0.8
217,353 + MPMX19_05512 0.14 +0.7
217,353 + MPMX19_05512 0.14 -2.1
217,353 + MPMX19_05512 0.14 +0.3
217,353 + MPMX19_05512 0.14 +1.6
217,353 + MPMX19_05512 0.14 -0.4
217,353 + MPMX19_05512 0.14 -0.4
217,353 + MPMX19_05512 0.14 -1.2
217,353 + MPMX19_05512 0.14 -0.6
217,353 + MPMX19_05512 0.14 -1.7
217,353 + MPMX19_05512 0.14 -0.7
217,353 + MPMX19_05512 0.14 -0.3
217,354 - MPMX19_05512 0.14 +0.0
217,354 - MPMX19_05512 0.14 -0.7
217,354 - MPMX19_05512 0.14 -1.3
217,354 - MPMX19_05512 0.14 -0.4
217,354 - MPMX19_05512 0.14 -0.5
217,354 - MPMX19_05512 0.14 -1.2
217,354 - MPMX19_05512 0.14 -1.1
217,354 - MPMX19_05512 0.14 -0.4
217,354 - MPMX19_05512 0.14 -0.8
217,354 - MPMX19_05512 0.14 +0.4
217,354 - MPMX19_05512 0.14 -1.8
217,354 - MPMX19_05512 0.14 -0.9
217,354 - MPMX19_05512 0.14 -0.2
217,354 - MPMX19_05512 0.14 -0.7
217,354 - MPMX19_05512 0.14 -0.5
217,509 + MPMX19_05512 0.39 -0.1
217,509 + MPMX19_05512 0.39 +0.6
217,509 + MPMX19_05512 0.39 -1.0
217,509 + MPMX19_05512 0.39 +0.4
217,510 - MPMX19_05512 0.39 -0.7
217,510 - MPMX19_05512 0.39 -0.7
217,510 - MPMX19_05512 0.39 -0.7
217,510 - MPMX19_05512 0.39 +1.1
217,510 - MPMX19_05512 0.39 -2.6
217,518 + MPMX19_05512 0.40 -0.1
217,518 + MPMX19_05512 0.40 -0.4
217,519 - MPMX19_05512 0.40 -0.9
217,519 - MPMX19_05512 0.40 +0.4
217,519 - MPMX19_05512 0.40 +1.3
217,519 - MPMX19_05512 0.40 -0.1
217,519 - MPMX19_05512 0.40 -1.0
217,519 - MPMX19_05512 0.40 +0.7
217,614 + MPMX19_05512 0.56 -0.4
217,614 + MPMX19_05512 0.56 -0.4
217,614 + MPMX19_05512 0.56 +1.2
217,614 + MPMX19_05512 0.56 +0.8
217,614 + MPMX19_05512 0.56 +1.0
217,614 + MPMX19_05512 0.56 +0.8
217,614 + MPMX19_05512 0.56 -0.1
217,614 + MPMX19_05512 0.56 +1.4
217,614 + MPMX19_05512 0.56 -0.1
217,614 + MPMX19_05512 0.56 -0.5
217,614 + MPMX19_05512 0.56 -1.3
217,614 + MPMX19_05512 0.56 -0.2
217,614 + MPMX19_05512 0.56 +0.2
217,614 + MPMX19_05512 0.56 -0.0
217,614 + MPMX19_05512 0.56 +0.5
217,615 - MPMX19_05512 0.56 -0.7
217,615 - MPMX19_05512 0.56 +0.4
217,615 - MPMX19_05512 0.56 -0.5
217,615 - MPMX19_05512 0.56 -0.9
217,615 - MPMX19_05512 0.56 +0.3
217,615 - MPMX19_05512 0.56 +0.2
217,615 - MPMX19_05512 0.56 -1.5
217,615 - MPMX19_05512 0.56 -0.3
217,615 - MPMX19_05512 0.56 -1.7
217,615 - MPMX19_05512 0.56 +1.6
217,615 - MPMX19_05512 0.56 +1.3
217,615 - MPMX19_05512 0.56 +0.2
217,615 - MPMX19_05512 0.56 +0.1
217,761 + MPMX19_05512 0.79 +0.2
217,762 - MPMX19_05512 0.79 -0.3
217,762 - MPMX19_05512 0.79 +0.4
217,762 - MPMX19_05512 0.79 -0.5

Or see this region's nucleotide sequence