Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05491 and MPMX19_05492 are separated by 105 nucleotides MPMX19_05492 and MPMX19_05493 are separated by 42 nucleotides
MPMX19_05491: MPMX19_05491 - hypothetical protein, at 191,992 to 194,382
_05491
MPMX19_05492: MPMX19_05492 - hypothetical protein, at 194,488 to 195,138
_05492
MPMX19_05493: MPMX19_05493 - hypothetical protein, at 195,181 to 196,899
_05493
Position (kb) 194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 193.508 kb on + strand, within MPMX19_05491 at 193.508 kb on + strand, within MPMX19_05491 at 193.508 kb on + strand, within MPMX19_05491 at 193.508 kb on + strand, within MPMX19_05491 at 193.508 kb on + strand, within MPMX19_05491 at 193.509 kb on - strand, within MPMX19_05491 at 193.685 kb on + strand, within MPMX19_05491 at 193.685 kb on + strand, within MPMX19_05491 at 193.685 kb on + strand, within MPMX19_05491 at 193.686 kb on - strand, within MPMX19_05491 at 193.686 kb on - strand, within MPMX19_05491 at 193.904 kb on + strand, within MPMX19_05491 at 193.904 kb on + strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.905 kb on - strand, within MPMX19_05491 at 193.973 kb on + strand, within MPMX19_05491 at 193.973 kb on + strand, within MPMX19_05491 at 193.973 kb on + strand, within MPMX19_05491 at 193.973 kb on + strand, within MPMX19_05491 at 193.973 kb on + strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 193.974 kb on - strand, within MPMX19_05491 at 194.423 kb on + strand at 194.423 kb on + strand at 194.423 kb on + strand at 194.423 kb on + strand at 194.423 kb on + strand at 194.423 kb on + strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.424 kb on - strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.428 kb on + strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.429 kb on - strand at 194.648 kb on + strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.649 kb on - strand, within MPMX19_05492 at 194.663 kb on + strand, within MPMX19_05492 at 194.664 kb on - strand, within MPMX19_05492 at 194.664 kb on - strand, within MPMX19_05492 at 194.664 kb on - strand, within MPMX19_05492 at 194.664 kb on - strand, within MPMX19_05492 at 194.664 kb on - strand, within MPMX19_05492 at 194.664 kb on - strand, within MPMX19_05492 at 194.741 kb on + strand, within MPMX19_05492 at 194.741 kb on + strand, within MPMX19_05492 at 194.741 kb on + strand, within MPMX19_05492 at 194.741 kb on + strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.742 kb on - strand, within MPMX19_05492 at 194.993 kb on + strand, within MPMX19_05492 at 194.993 kb on + strand, within MPMX19_05492 at 194.993 kb on + strand, within MPMX19_05492 at 194.993 kb on + strand, within MPMX19_05492 at 194.993 kb on + strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 194.994 kb on - strand, within MPMX19_05492 at 195.079 kb on + strand at 195.079 kb on + strand at 195.079 kb on + strand at 195.080 kb on - strand at 195.080 kb on - strand at 195.080 kb on - strand at 195.080 kb on - strand at 195.197 kb on + strand at 195.197 kb on + strand at 195.198 kb on - strand at 195.198 kb on - strand at 195.198 kb on - strand at 195.230 kb on + strand at 195.230 kb on + strand at 195.230 kb on + strand at 195.230 kb on + strand at 195.230 kb on + strand at 195.230 kb on + strand at 195.231 kb on - strand at 195.231 kb on - strand at 195.231 kb on - strand at 195.231 kb on - strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.235 kb on + strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.236 kb on - strand at 195.238 kb on + strand at 195.238 kb on + strand at 195.238 kb on + strand at 195.238 kb on + strand at 195.238 kb on + strand at 195.238 kb on + strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.239 kb on - strand at 195.329 kb on + strand at 195.330 kb on - strand at 195.330 kb on - strand at 195.330 kb on - strand at 195.330 kb on - strand at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.545 kb on + strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.546 kb on - strand, within MPMX19_05493 at 195.725 kb on + strand, within MPMX19_05493 at 195.725 kb on + strand, within MPMX19_05493 at 195.726 kb on - strand, within MPMX19_05493 at 195.726 kb on - strand, within MPMX19_05493 at 195.728 kb on + strand, within MPMX19_05493 at 195.729 kb on - strand, within MPMX19_05493 at 195.729 kb on - strand, within MPMX19_05493 at 195.729 kb on - strand, within MPMX19_05493 at 195.729 kb on - strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.782 kb on + strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.783 kb on - strand, within MPMX19_05493 at 195.806 kb on + strand, within MPMX19_05493 at 195.806 kb on + strand, within MPMX19_05493 at 195.806 kb on + strand, within MPMX19_05493 at 195.806 kb on + strand, within MPMX19_05493 at 195.807 kb on - strand, within MPMX19_05493 at 195.807 kb on - strand, within MPMX19_05493 at 195.807 kb on - strand, within MPMX19_05493 at 195.860 kb on + strand, within MPMX19_05493 at 195.860 kb on + strand, within MPMX19_05493 at 195.860 kb on + strand, within MPMX19_05493 at 195.860 kb on + strand, within MPMX19_05493 at 195.860 kb on + strand, within MPMX19_05493 at 195.861 kb on - strand, within MPMX19_05493 at 195.861 kb on - strand, within MPMX19_05493 at 195.861 kb on - strand, within MPMX19_05493 at 195.861 kb on - strand, within MPMX19_05493 at 195.861 kb on - strand, within MPMX19_05493
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 193,508 + MPMX19_05491 0.63 -1.0 193,508 + MPMX19_05491 0.63 +0.5 193,508 + MPMX19_05491 0.63 +1.3 193,508 + MPMX19_05491 0.63 -0.5 193,508 + MPMX19_05491 0.63 -0.8 193,509 - MPMX19_05491 0.63 +1.5 193,685 + MPMX19_05491 0.71 -0.3 193,685 + MPMX19_05491 0.71 -1.1 193,685 + MPMX19_05491 0.71 -0.5 193,686 - MPMX19_05491 0.71 -0.8 193,686 - MPMX19_05491 0.71 -0.9 193,904 + MPMX19_05491 0.80 +0.0 193,904 + MPMX19_05491 0.80 -1.5 193,905 - MPMX19_05491 0.80 +0.3 193,905 - MPMX19_05491 0.80 -2.3 193,905 - MPMX19_05491 0.80 +0.0 193,905 - MPMX19_05491 0.80 -0.8 193,905 - MPMX19_05491 0.80 +0.7 193,905 - MPMX19_05491 0.80 -0.2 193,905 - MPMX19_05491 0.80 -0.8 193,905 - MPMX19_05491 0.80 -1.3 193,973 + MPMX19_05491 0.83 -0.8 193,973 + MPMX19_05491 0.83 -0.4 193,973 + MPMX19_05491 0.83 -0.2 193,973 + MPMX19_05491 0.83 +0.0 193,973 + MPMX19_05491 0.83 +0.4 193,974 - MPMX19_05491 0.83 +1.5 193,974 - MPMX19_05491 0.83 -0.0 193,974 - MPMX19_05491 0.83 +1.6 193,974 - MPMX19_05491 0.83 +0.2 193,974 - MPMX19_05491 0.83 -0.1 193,974 - MPMX19_05491 0.83 -1.0 193,974 - MPMX19_05491 0.83 -0.7 193,974 - MPMX19_05491 0.83 +0.0 194,423 + -0.2 194,423 + -0.8 194,423 + +0.1 194,423 + +0.2 194,423 + +0.7 194,423 + -0.5 194,424 - -0.8 194,424 - -1.5 194,424 - -0.7 194,424 - +0.0 194,424 - +0.1 194,424 - -0.2 194,424 - -0.1 194,424 - +0.2 194,424 - +0.0 194,428 + +0.5 194,428 + -2.0 194,428 + -0.4 194,428 + +0.0 194,428 + -0.1 194,428 + +0.3 194,428 + -1.7 194,428 + -0.5 194,428 + -0.3 194,429 - +0.5 194,429 - +0.5 194,429 - -0.4 194,429 - -1.5 194,429 - +0.6 194,429 - +0.1 194,429 - +1.3 194,429 - -0.2 194,429 - -0.9 194,429 - +0.5 194,429 - +0.1 194,429 - -0.4 194,429 - -0.7 194,429 - +0.9 194,429 - -0.4 194,429 - +0.2 194,429 - -0.6 194,429 - -2.8 194,429 - +1.2 194,648 + MPMX19_05492 0.25 +0.0 194,649 - MPMX19_05492 0.25 +1.6 194,649 - MPMX19_05492 0.25 +1.0 194,649 - MPMX19_05492 0.25 +0.0 194,649 - MPMX19_05492 0.25 -1.2 194,649 - MPMX19_05492 0.25 -1.4 194,649 - MPMX19_05492 0.25 +0.5 194,649 - MPMX19_05492 0.25 +1.1 194,663 + MPMX19_05492 0.27 -1.4 194,664 - MPMX19_05492 0.27 -1.0 194,664 - MPMX19_05492 0.27 -1.3 194,664 - MPMX19_05492 0.27 +0.6 194,664 - MPMX19_05492 0.27 +1.1 194,664 - MPMX19_05492 0.27 -0.2 194,664 - MPMX19_05492 0.27 -0.3 194,741 + MPMX19_05492 0.39 -1.2 194,741 + MPMX19_05492 0.39 +0.6 194,741 + MPMX19_05492 0.39 +0.2 194,741 + MPMX19_05492 0.39 +1.2 194,742 - MPMX19_05492 0.39 -1.7 194,742 - MPMX19_05492 0.39 -1.3 194,742 - MPMX19_05492 0.39 -1.2 194,742 - MPMX19_05492 0.39 -0.3 194,742 - MPMX19_05492 0.39 +0.8 194,742 - MPMX19_05492 0.39 -1.7 194,742 - MPMX19_05492 0.39 -2.5 194,742 - MPMX19_05492 0.39 -1.8 194,993 + MPMX19_05492 0.78 +0.0 194,993 + MPMX19_05492 0.78 +0.2 194,993 + MPMX19_05492 0.78 +0.6 194,993 + MPMX19_05492 0.78 -2.5 194,993 + MPMX19_05492 0.78 -0.3 194,994 - MPMX19_05492 0.78 +0.0 194,994 - MPMX19_05492 0.78 -0.8 194,994 - MPMX19_05492 0.78 -3.0 194,994 - MPMX19_05492 0.78 +0.9 194,994 - MPMX19_05492 0.78 -0.2 194,994 - MPMX19_05492 0.78 +1.6 194,994 - MPMX19_05492 0.78 +1.0 194,994 - MPMX19_05492 0.78 +0.7 194,994 - MPMX19_05492 0.78 +0.1 194,994 - MPMX19_05492 0.78 +0.4 194,994 - MPMX19_05492 0.78 -1.8 194,994 - MPMX19_05492 0.78 -1.5 194,994 - MPMX19_05492 0.78 -1.2 195,079 + -0.6 195,079 + -0.0 195,079 + -0.1 195,080 - -0.3 195,080 - +0.4 195,080 - +0.0 195,080 - -0.4 195,197 + -0.7 195,197 + -0.3 195,198 - -1.1 195,198 - +0.5 195,198 - -1.0 195,230 + -1.1 195,230 + +0.7 195,230 + +0.4 195,230 + -0.9 195,230 + -0.4 195,230 + +0.8 195,231 - -0.8 195,231 - +0.5 195,231 - +0.8 195,231 - +0.5 195,235 + -0.0 195,235 + -0.9 195,235 + +0.1 195,235 + -1.2 195,235 + -1.4 195,235 + +0.1 195,235 + -2.5 195,235 + +0.8 195,235 + -0.5 195,235 + +0.6 195,235 + +0.6 195,235 + -0.1 195,235 + -0.7 195,236 - +0.4 195,236 - -1.0 195,236 - -0.5 195,236 - -0.1 195,236 - -1.8 195,236 - +0.8 195,236 - -0.5 195,236 - -1.1 195,236 - -0.5 195,238 + -0.8 195,238 + -0.0 195,238 + -0.4 195,238 + -0.1 195,238 + -1.2 195,238 + -0.6 195,239 - -0.1 195,239 - -0.2 195,239 - -0.3 195,239 - -0.4 195,239 - -0.5 195,239 - -0.9 195,239 - +0.8 195,239 - -0.7 195,329 + +0.3 195,330 - -2.2 195,330 - -1.5 195,330 - +1.2 195,330 - -1.1 195,545 + MPMX19_05493 0.21 +1.4 195,545 + MPMX19_05493 0.21 -0.6 195,545 + MPMX19_05493 0.21 -0.4 195,545 + MPMX19_05493 0.21 -0.5 195,545 + MPMX19_05493 0.21 -0.8 195,545 + MPMX19_05493 0.21 -0.4 195,545 + MPMX19_05493 0.21 +1.5 195,545 + MPMX19_05493 0.21 +0.3 195,545 + MPMX19_05493 0.21 +1.9 195,545 + MPMX19_05493 0.21 +0.1 195,545 + MPMX19_05493 0.21 +0.5 195,545 + MPMX19_05493 0.21 -0.0 195,545 + MPMX19_05493 0.21 +1.3 195,545 + MPMX19_05493 0.21 +0.1 195,546 - MPMX19_05493 0.21 -0.3 195,546 - MPMX19_05493 0.21 +0.0 195,546 - MPMX19_05493 0.21 -0.3 195,546 - MPMX19_05493 0.21 -0.1 195,546 - MPMX19_05493 0.21 +0.3 195,546 - MPMX19_05493 0.21 +0.1 195,546 - MPMX19_05493 0.21 -0.7 195,546 - MPMX19_05493 0.21 -1.2 195,546 - MPMX19_05493 0.21 -0.5 195,725 + MPMX19_05493 0.32 +1.2 195,725 + MPMX19_05493 0.32 -0.5 195,726 - MPMX19_05493 0.32 +0.3 195,726 - MPMX19_05493 0.32 -0.7 195,728 + MPMX19_05493 0.32 +0.8 195,729 - MPMX19_05493 0.32 -0.2 195,729 - MPMX19_05493 0.32 -0.7 195,729 - MPMX19_05493 0.32 -1.5 195,729 - MPMX19_05493 0.32 +1.0 195,782 + MPMX19_05493 0.35 -0.3 195,782 + MPMX19_05493 0.35 +0.2 195,782 + MPMX19_05493 0.35 -0.3 195,782 + MPMX19_05493 0.35 -1.0 195,782 + MPMX19_05493 0.35 +0.1 195,782 + MPMX19_05493 0.35 -0.2 195,782 + MPMX19_05493 0.35 -0.3 195,782 + MPMX19_05493 0.35 +1.2 195,782 + MPMX19_05493 0.35 -0.1 195,782 + MPMX19_05493 0.35 -0.5 195,782 + MPMX19_05493 0.35 +0.1 195,782 + MPMX19_05493 0.35 -0.1 195,782 + MPMX19_05493 0.35 -0.3 195,782 + MPMX19_05493 0.35 -1.1 195,783 - MPMX19_05493 0.35 +0.9 195,783 - MPMX19_05493 0.35 -0.6 195,783 - MPMX19_05493 0.35 -0.3 195,783 - MPMX19_05493 0.35 -0.4 195,783 - MPMX19_05493 0.35 -1.0 195,783 - MPMX19_05493 0.35 -0.5 195,783 - MPMX19_05493 0.35 -0.2 195,783 - MPMX19_05493 0.35 -0.4 195,783 - MPMX19_05493 0.35 -1.0 195,783 - MPMX19_05493 0.35 -0.5 195,783 - MPMX19_05493 0.35 -0.4 195,783 - MPMX19_05493 0.35 +0.6 195,806 + MPMX19_05493 0.36 +0.2 195,806 + MPMX19_05493 0.36 -0.1 195,806 + MPMX19_05493 0.36 -0.5 195,806 + MPMX19_05493 0.36 -0.9 195,807 - MPMX19_05493 0.36 -1.2 195,807 - MPMX19_05493 0.36 -1.1 195,807 - MPMX19_05493 0.36 +0.3 195,860 + MPMX19_05493 0.39 -0.8 195,860 + MPMX19_05493 0.39 +0.8 195,860 + MPMX19_05493 0.39 +0.0 195,860 + MPMX19_05493 0.39 -1.4 195,860 + MPMX19_05493 0.39 -0.7 195,861 - MPMX19_05493 0.40 -0.9 195,861 - MPMX19_05493 0.40 -2.3 195,861 - MPMX19_05493 0.40 -0.2 195,861 - MPMX19_05493 0.40 +0.3 195,861 - MPMX19_05493 0.40 -0.7
Or see this region's nucleotide sequence