Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05427

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05426 and MPMX19_05427 are separated by 60 nucleotidesMPMX19_05427 and MPMX19_05428 are separated by 81 nucleotides MPMX19_05426: MPMX19_05426 - NADPH dehydrogenase, at 117,150 to 118,265 _05426 MPMX19_05427: MPMX19_05427 - L-glyceraldehyde 3-phosphate reductase, at 118,326 to 119,381 _05427 MPMX19_05428: MPMX19_05428 - PCP degradation transcriptional activation protein, at 119,463 to 120,377 _05428 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.747 kb on + strand, within MPMX19_05426at 117.748 kb on - strand, within MPMX19_05426at 117.858 kb on + strand, within MPMX19_05426at 117.858 kb on + strand, within MPMX19_05426at 117.859 kb on - strand, within MPMX19_05426at 117.859 kb on - strand, within MPMX19_05426at 117.859 kb on - strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.150 kb on - strand, within MPMX19_05426at 118.150 kb on - strand, within MPMX19_05426at 118.277 kb on + strandat 118.277 kb on + strandat 118.277 kb on + strandat 118.278 kb on - strandat 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 119.032 kb on + strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.056 kb on + strand, within MPMX19_05427at 119.057 kb on - strand, within MPMX19_05427at 119.077 kb on + strand, within MPMX19_05427at 119.077 kb on + strand, within MPMX19_05427at 119.113 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.332 kb on + strandat 119.333 kb on - strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.348 kb on - strandat 119.348 kb on - strandat 119.355 kb on - strandat 119.355 kb on - strandat 119.368 kb on + strandat 119.368 kb on + strandat 119.368 kb on + strandat 119.368 kb on + strandat 119.369 kb on - strandat 119.369 kb on - strandat 119.411 kb on - strandat 119.411 kb on - strandat 119.412 kb on + strandat 119.412 kb on + strandat 119.412 kb on + strandat 119.413 kb on - strandat 119.413 kb on - strandat 119.413 kb on - strandat 119.421 kb on - strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.462 kb on - strandat 119.462 kb on - strandat 119.462 kb on - strandat 119.462 kb on - strandat 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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117,696 + MPMX19_05426 0.49 +0.1
117,696 + MPMX19_05426 0.49 -0.3
117,696 + MPMX19_05426 0.49 +0.3
117,696 + MPMX19_05426 0.49 -1.3
117,696 + MPMX19_05426 0.49 -0.1
117,696 + MPMX19_05426 0.49 +0.0
117,696 + MPMX19_05426 0.49 -2.2
117,697 - MPMX19_05426 0.49 +0.3
117,697 - MPMX19_05426 0.49 +0.3
117,697 - MPMX19_05426 0.49 -0.8
117,697 - MPMX19_05426 0.49 +0.2
117,747 + MPMX19_05426 0.53 +0.6
117,748 - MPMX19_05426 0.54 +0.6
117,858 + MPMX19_05426 0.63 +0.0
117,858 + MPMX19_05426 0.63 -2.0
117,859 - MPMX19_05426 0.64 -0.5
117,859 - MPMX19_05426 0.64 -0.4
117,859 - MPMX19_05426 0.64 -0.5
118,149 + MPMX19_05426 0.90 -0.4
118,149 + MPMX19_05426 0.90 -1.3
118,149 + MPMX19_05426 0.90 +0.7
118,149 + MPMX19_05426 0.90 +0.5
118,150 - MPMX19_05426 0.90 -2.4
118,150 - MPMX19_05426 0.90 +0.6
118,277 + -1.2
118,277 + -1.2
118,277 + +1.1
118,278 - +0.3
118,666 + MPMX19_05427 0.32 -1.8
118,666 + MPMX19_05427 0.32 -1.3
118,666 + MPMX19_05427 0.32 -0.9
118,666 + MPMX19_05427 0.32 -0.4
118,666 + MPMX19_05427 0.32 -0.4
118,666 + MPMX19_05427 0.32 -0.6
118,667 - MPMX19_05427 0.32 -0.6
118,667 - MPMX19_05427 0.32 -1.0
118,667 - MPMX19_05427 0.32 -1.3
118,667 - MPMX19_05427 0.32 -0.2
118,667 - MPMX19_05427 0.32 -0.2
118,667 - MPMX19_05427 0.32 -1.2
118,667 - MPMX19_05427 0.32 -1.0
118,667 - MPMX19_05427 0.32 +0.9
118,667 - MPMX19_05427 0.32 -1.4
118,667 - MPMX19_05427 0.32 -1.7
118,667 - MPMX19_05427 0.32 -0.8
118,667 - MPMX19_05427 0.32 +0.3
118,667 - MPMX19_05427 0.32 -0.1
118,667 - MPMX19_05427 0.32 -0.5
118,667 - MPMX19_05427 0.32 -1.0
118,789 + MPMX19_05427 0.44 -1.7
118,789 + MPMX19_05427 0.44 -0.6
118,789 + MPMX19_05427 0.44 +0.4
118,789 + MPMX19_05427 0.44 -0.4
118,789 + MPMX19_05427 0.44 +0.2
118,789 + MPMX19_05427 0.44 +0.2
118,790 - MPMX19_05427 0.44 -0.5
118,790 - MPMX19_05427 0.44 +0.0
118,790 - MPMX19_05427 0.44 -0.0
118,867 + MPMX19_05427 0.51 +0.7
118,867 + MPMX19_05427 0.51 -0.6
118,867 + MPMX19_05427 0.51 -1.0
118,868 - MPMX19_05427 0.51 -1.2
118,868 - MPMX19_05427 0.51 -0.6
118,868 - MPMX19_05427 0.51 -1.2
118,885 + MPMX19_05427 0.53 +0.1
118,885 + MPMX19_05427 0.53 -1.0
118,885 + MPMX19_05427 0.53 -0.6
118,885 + MPMX19_05427 0.53 +0.9
118,885 + MPMX19_05427 0.53 +0.6
118,885 + MPMX19_05427 0.53 -0.7
118,885 + MPMX19_05427 0.53 +0.3
118,885 + MPMX19_05427 0.53 -1.0
118,885 + MPMX19_05427 0.53 -2.0
118,885 + MPMX19_05427 0.53 +1.0
118,886 - MPMX19_05427 0.53 -0.1
118,886 - MPMX19_05427 0.53 +0.1
118,886 - MPMX19_05427 0.53 -1.7
118,886 - MPMX19_05427 0.53 +0.0
118,886 - MPMX19_05427 0.53 -1.0
118,886 - MPMX19_05427 0.53 +0.6
118,886 - MPMX19_05427 0.53 +0.5
118,886 - MPMX19_05427 0.53 -0.2
118,969 + MPMX19_05427 0.61 +0.5
118,969 + MPMX19_05427 0.61 +0.4
118,969 + MPMX19_05427 0.61 -0.1
118,969 + MPMX19_05427 0.61 -0.2
118,969 + MPMX19_05427 0.61 -0.8
118,969 + MPMX19_05427 0.61 -0.8
118,969 + MPMX19_05427 0.61 +0.0
118,970 - MPMX19_05427 0.61 +0.3
118,970 - MPMX19_05427 0.61 -0.3
118,970 - MPMX19_05427 0.61 -0.1
118,970 - MPMX19_05427 0.61 +1.1
118,970 - MPMX19_05427 0.61 -0.8
118,970 - MPMX19_05427 0.61 +0.2
118,984 + MPMX19_05427 0.62 -1.2
118,984 + MPMX19_05427 0.62 -0.2
118,984 + MPMX19_05427 0.62 +0.5
118,984 + MPMX19_05427 0.62 +0.5
118,984 + MPMX19_05427 0.62 +1.6
118,984 + MPMX19_05427 0.62 +0.6
118,985 - MPMX19_05427 0.62 -0.2
118,985 - MPMX19_05427 0.62 -0.4
118,985 - MPMX19_05427 0.62 -0.4
118,985 - MPMX19_05427 0.62 -2.1
119,032 + MPMX19_05427 0.67 -0.1
119,033 - MPMX19_05427 0.67 +0.4
119,033 - MPMX19_05427 0.67 -0.5
119,033 - MPMX19_05427 0.67 -1.0
119,033 - MPMX19_05427 0.67 +1.2
119,033 - MPMX19_05427 0.67 -0.6
119,033 - MPMX19_05427 0.67 -0.9
119,033 - MPMX19_05427 0.67 -0.1
119,056 + MPMX19_05427 0.69 -1.4
119,057 - MPMX19_05427 0.69 -1.2
119,077 + MPMX19_05427 0.71 -0.2
119,077 + MPMX19_05427 0.71 -0.2
119,113 + MPMX19_05427 0.75 +0.6
119,179 + MPMX19_05427 0.81 -0.2
119,179 + MPMX19_05427 0.81 +0.9
119,179 + MPMX19_05427 0.81 -0.6
119,179 + MPMX19_05427 0.81 -0.8
119,180 - MPMX19_05427 0.81 -1.6
119,180 - MPMX19_05427 0.81 +1.1
119,180 - MPMX19_05427 0.81 +1.3
119,180 - MPMX19_05427 0.81 -1.8
119,180 - MPMX19_05427 0.81 +0.5
119,180 - MPMX19_05427 0.81 -1.0
119,180 - MPMX19_05427 0.81 -1.3
119,180 - MPMX19_05427 0.81 -2.1
119,332 + -0.1
119,333 - -0.6
119,347 + -0.7
119,347 + -0.8
119,347 + -0.0
119,347 + -0.3
119,347 + -0.2
119,348 - -0.4
119,348 - -1.2
119,355 - -0.4
119,355 - -1.7
119,368 + -1.6
119,368 + +0.2
119,368 + -0.8
119,368 + -0.3
119,369 - +0.0
119,369 - +0.2
119,411 - -0.2
119,411 - -1.0
119,412 + +0.2
119,412 + +1.6
119,412 + -1.8
119,413 - +0.7
119,413 - -1.6
119,413 - -0.5
119,421 - +0.3
119,461 + -0.2
119,461 + -1.6
119,461 + -0.7
119,461 + +0.4
119,461 + -1.2
119,462 - -1.2
119,462 - +0.2
119,462 - +0.5
119,462 - -0.9
120,052 + MPMX19_05428 0.64 -0.4
120,052 + MPMX19_05428 0.64 -0.5
120,052 + MPMX19_05428 0.64 -1.1
120,052 + MPMX19_05428 0.64 -0.1
120,052 + MPMX19_05428 0.64 -0.4
120,052 + MPMX19_05428 0.64 -0.7
120,053 - MPMX19_05428 0.64 -0.2
120,053 - MPMX19_05428 0.64 +0.9
120,053 - MPMX19_05428 0.64 +1.3
120,053 - MPMX19_05428 0.64 -1.2
120,053 - MPMX19_05428 0.64 +0.0
120,053 - MPMX19_05428 0.64 +0.0
120,053 - MPMX19_05428 0.64 -1.0
120,053 - MPMX19_05428 0.64 +0.8

Or see this region's nucleotide sequence