Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05412

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05411 and MPMX19_05412 are separated by 293 nucleotidesMPMX19_05412 and MPMX19_05413 are separated by 112 nucleotides MPMX19_05411: MPMX19_05411 - Periplasmic alpha-galactoside-binding protein, at 92,146 to 94,005 _05411 MPMX19_05412: MPMX19_05412 - Glutathione import ATP-binding protein GsiA, at 94,299 to 96,047 _05412 MPMX19_05413: MPMX19_05413 - hypothetical protein, at 96,160 to 99,303 _05413 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.416 kb on + strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.417 kb on - strand, within MPMX19_05411at 93.455 kb on + strand, within MPMX19_05411at 93.455 kb on + strand, within MPMX19_05411at 93.455 kb on + strand, within MPMX19_05411at 93.456 kb on - strand, within MPMX19_05411at 93.456 kb on - strand, within MPMX19_05411at 93.467 kb on + strand, within MPMX19_05411at 93.479 kb on + strand, within MPMX19_05411at 93.479 kb on + strand, within MPMX19_05411at 93.479 kb on + strand, within MPMX19_05411at 93.479 kb on + strand, within MPMX19_05411at 93.480 kb on - strand, within MPMX19_05411at 93.480 kb on - strand, within MPMX19_05411at 93.480 kb on - strand, within MPMX19_05411at 93.494 kb on + strand, within MPMX19_05411at 93.495 kb on - strand, within MPMX19_05411at 93.536 kb on + strand, within MPMX19_05411at 93.536 kb on + strand, within MPMX19_05411at 93.537 kb on - strand, within MPMX19_05411at 93.537 kb on - strand, within MPMX19_05411at 93.537 kb on - strand, within MPMX19_05411at 93.537 kb on - strand, within MPMX19_05411at 93.812 kb on + strand, within MPMX19_05411at 93.812 kb on + strand, within MPMX19_05411at 93.813 kb on - strand, within MPMX19_05411at 93.813 kb on - strand, within MPMX19_05411at 93.813 kb on - strand, within MPMX19_05411at 93.830 kb on + strandat 93.831 kb on - strandat 93.836 kb on + strandat 93.836 kb on + strandat 93.836 kb on + strandat 93.837 kb on - strandat 93.837 kb on - strandat 93.837 kb on - strandat 93.837 kb on - strandat 94.156 kb on + strandat 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.483 kb on + strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.484 kb on - strand, within MPMX19_05412at 94.927 kb on + strand, within MPMX19_05412at 94.928 kb on - strand, within MPMX19_05412at 94.928 kb on - strand, within MPMX19_05412at 94.928 kb on - strand, within MPMX19_05412at 94.928 kb on - strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.191 kb on + strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.192 kb on - strand, within MPMX19_05412at 95.302 kb on + strand, within MPMX19_05412at 95.302 kb on + strand, within MPMX19_05412at 95.303 kb on - strand, within MPMX19_05412at 95.303 kb on - strand, within MPMX19_05412at 95.303 kb on - strand, within MPMX19_05412at 95.303 kb on - strand, within MPMX19_05412at 95.599 kb on + strand, within MPMX19_05412at 95.600 kb on - strand, within MPMX19_05412at 95.600 kb on - strand, within MPMX19_05412at 95.600 kb on - strand, within MPMX19_05412at 95.600 kb on - strand, within MPMX19_05412at 95.600 kb on - strand, within MPMX19_05412at 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.443 kb on + strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.444 kb on - strandat 96.545 kb on + strand, within MPMX19_05413at 96.545 kb on + strand, within MPMX19_05413at 96.545 kb on + strand, within MPMX19_05413at 96.546 kb on - strand, within MPMX19_05413at 96.546 kb on - strand, within MPMX19_05413at 96.546 kb on - strand, within MPMX19_05413at 96.755 kb on + strand, within MPMX19_05413at 96.755 kb on + strand, within MPMX19_05413at 96.755 kb on + strand, within MPMX19_05413at 96.756 kb on - strand, within MPMX19_05413at 96.756 kb on - strand, within MPMX19_05413at 96.756 kb on - strand, within MPMX19_05413at 96.756 kb on - strand, within MPMX19_05413at 96.756 kb on - strand, within MPMX19_05413at 96.869 kb on + strand, within MPMX19_05413at 96.869 kb on + strand, within MPMX19_05413at 96.869 kb on + strand, within MPMX19_05413at 96.869 kb on + strand, within MPMX19_05413at 96.869 kb on + strand, within MPMX19_05413at 96.870 kb on - strand, within MPMX19_05413at 96.870 kb on - strand, within MPMX19_05413at 96.870 kb on - strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.887 kb on + strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.888 kb on - strand, within MPMX19_05413at 96.995 kb on - strand, within MPMX19_05413

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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93,416 + MPMX19_05411 0.68 -0.7
93,416 + MPMX19_05411 0.68 -0.5
93,416 + MPMX19_05411 0.68 -1.4
93,416 + MPMX19_05411 0.68 -2.2
93,416 + MPMX19_05411 0.68 +1.0
93,416 + MPMX19_05411 0.68 -0.7
93,416 + MPMX19_05411 0.68 -0.2
93,416 + MPMX19_05411 0.68 -1.2
93,416 + MPMX19_05411 0.68 +0.7
93,416 + MPMX19_05411 0.68 +0.5
93,416 + MPMX19_05411 0.68 -1.1
93,416 + MPMX19_05411 0.68 -0.4
93,417 - MPMX19_05411 0.68 -2.5
93,417 - MPMX19_05411 0.68 +0.0
93,417 - MPMX19_05411 0.68 -1.0
93,417 - MPMX19_05411 0.68 +0.4
93,417 - MPMX19_05411 0.68 +0.3
93,417 - MPMX19_05411 0.68 -0.3
93,417 - MPMX19_05411 0.68 -0.2
93,417 - MPMX19_05411 0.68 -1.4
93,417 - MPMX19_05411 0.68 -1.0
93,417 - MPMX19_05411 0.68 +0.0
93,417 - MPMX19_05411 0.68 -1.2
93,417 - MPMX19_05411 0.68 -1.7
93,417 - MPMX19_05411 0.68 -0.8
93,455 + MPMX19_05411 0.70 -0.2
93,455 + MPMX19_05411 0.70 +0.2
93,455 + MPMX19_05411 0.70 +0.2
93,456 - MPMX19_05411 0.70 +0.0
93,456 - MPMX19_05411 0.70 -0.3
93,467 + MPMX19_05411 0.71 -0.3
93,479 + MPMX19_05411 0.72 +0.8
93,479 + MPMX19_05411 0.72 +0.4
93,479 + MPMX19_05411 0.72 +0.0
93,479 + MPMX19_05411 0.72 +0.9
93,480 - MPMX19_05411 0.72 +0.1
93,480 - MPMX19_05411 0.72 +1.1
93,480 - MPMX19_05411 0.72 -0.4
93,494 + MPMX19_05411 0.72 +0.8
93,495 - MPMX19_05411 0.73 +1.3
93,536 + MPMX19_05411 0.75 -0.5
93,536 + MPMX19_05411 0.75 +1.3
93,537 - MPMX19_05411 0.75 -0.3
93,537 - MPMX19_05411 0.75 +0.4
93,537 - MPMX19_05411 0.75 +1.9
93,537 - MPMX19_05411 0.75 -0.2
93,812 + MPMX19_05411 0.90 -0.9
93,812 + MPMX19_05411 0.90 -1.8
93,813 - MPMX19_05411 0.90 -0.4
93,813 - MPMX19_05411 0.90 -0.7
93,813 - MPMX19_05411 0.90 +0.9
93,830 + -0.8
93,831 - -0.1
93,836 + +0.3
93,836 + -0.7
93,836 + +0.1
93,837 - +0.4
93,837 - -2.7
93,837 - +0.6
93,837 - +0.5
94,156 + -0.6
94,483 + MPMX19_05412 0.11 +0.3
94,483 + MPMX19_05412 0.11 +0.1
94,483 + MPMX19_05412 0.11 -0.3
94,483 + MPMX19_05412 0.11 +0.3
94,483 + MPMX19_05412 0.11 +0.6
94,483 + MPMX19_05412 0.11 -0.5
94,483 + MPMX19_05412 0.11 -0.6
94,483 + MPMX19_05412 0.11 +0.3
94,483 + MPMX19_05412 0.11 -0.1
94,484 - MPMX19_05412 0.11 -0.4
94,484 - MPMX19_05412 0.11 -0.1
94,484 - MPMX19_05412 0.11 +0.7
94,484 - MPMX19_05412 0.11 +0.9
94,484 - MPMX19_05412 0.11 -0.2
94,484 - MPMX19_05412 0.11 -0.5
94,484 - MPMX19_05412 0.11 -0.7
94,484 - MPMX19_05412 0.11 -1.0
94,484 - MPMX19_05412 0.11 -1.2
94,927 + MPMX19_05412 0.36 -0.2
94,928 - MPMX19_05412 0.36 +0.5
94,928 - MPMX19_05412 0.36 -0.6
94,928 - MPMX19_05412 0.36 -0.4
94,928 - MPMX19_05412 0.36 -0.4
95,191 + MPMX19_05412 0.51 -0.0
95,191 + MPMX19_05412 0.51 -0.3
95,191 + MPMX19_05412 0.51 -1.0
95,191 + MPMX19_05412 0.51 +0.0
95,191 + MPMX19_05412 0.51 -1.2
95,191 + MPMX19_05412 0.51 +1.0
95,191 + MPMX19_05412 0.51 -1.2
95,191 + MPMX19_05412 0.51 +0.9
95,192 - MPMX19_05412 0.51 -1.3
95,192 - MPMX19_05412 0.51 +0.2
95,192 - MPMX19_05412 0.51 -2.4
95,192 - MPMX19_05412 0.51 +0.3
95,192 - MPMX19_05412 0.51 -1.1
95,192 - MPMX19_05412 0.51 -1.1
95,192 - MPMX19_05412 0.51 -0.6
95,192 - MPMX19_05412 0.51 +0.6
95,192 - MPMX19_05412 0.51 +1.1
95,192 - MPMX19_05412 0.51 -0.1
95,192 - MPMX19_05412 0.51 +0.4
95,192 - MPMX19_05412 0.51 -1.0
95,192 - MPMX19_05412 0.51 +0.3
95,192 - MPMX19_05412 0.51 +0.2
95,192 - MPMX19_05412 0.51 +0.2
95,192 - MPMX19_05412 0.51 +0.2
95,302 + MPMX19_05412 0.57 -0.5
95,302 + MPMX19_05412 0.57 -1.4
95,303 - MPMX19_05412 0.57 +0.4
95,303 - MPMX19_05412 0.57 +0.5
95,303 - MPMX19_05412 0.57 -1.0
95,303 - MPMX19_05412 0.57 -0.6
95,599 + MPMX19_05412 0.74 -1.7
95,600 - MPMX19_05412 0.74 -2.2
95,600 - MPMX19_05412 0.74 +1.0
95,600 - MPMX19_05412 0.74 -1.2
95,600 - MPMX19_05412 0.74 -0.2
95,600 - MPMX19_05412 0.74 -0.1
96,443 + -0.0
96,443 + +1.3
96,443 + -1.7
96,443 + -0.7
96,443 + -1.1
96,444 - +0.1
96,444 - +0.4
96,444 - -0.8
96,444 - +0.6
96,444 - -0.1
96,444 - +0.0
96,444 - -1.4
96,444 - -0.6
96,545 + MPMX19_05413 0.12 -0.3
96,545 + MPMX19_05413 0.12 +0.3
96,545 + MPMX19_05413 0.12 -0.6
96,546 - MPMX19_05413 0.12 +0.6
96,546 - MPMX19_05413 0.12 -0.1
96,546 - MPMX19_05413 0.12 -0.6
96,755 + MPMX19_05413 0.19 +0.5
96,755 + MPMX19_05413 0.19 -1.6
96,755 + MPMX19_05413 0.19 +0.5
96,756 - MPMX19_05413 0.19 -0.6
96,756 - MPMX19_05413 0.19 -0.7
96,756 - MPMX19_05413 0.19 -1.2
96,756 - MPMX19_05413 0.19 -0.4
96,756 - MPMX19_05413 0.19 -0.1
96,869 + MPMX19_05413 0.23 +0.6
96,869 + MPMX19_05413 0.23 -1.4
96,869 + MPMX19_05413 0.23 -0.2
96,869 + MPMX19_05413 0.23 +0.3
96,869 + MPMX19_05413 0.23 -0.4
96,870 - MPMX19_05413 0.23 +0.4
96,870 - MPMX19_05413 0.23 -2.2
96,870 - MPMX19_05413 0.23 +1.6
96,887 + MPMX19_05413 0.23 -0.2
96,887 + MPMX19_05413 0.23 -0.2
96,887 + MPMX19_05413 0.23 -1.0
96,887 + MPMX19_05413 0.23 +1.0
96,887 + MPMX19_05413 0.23 +0.6
96,887 + MPMX19_05413 0.23 -0.6
96,887 + MPMX19_05413 0.23 +0.8
96,887 + MPMX19_05413 0.23 -0.6
96,887 + MPMX19_05413 0.23 +0.0
96,887 + MPMX19_05413 0.23 -0.3
96,887 + MPMX19_05413 0.23 +0.4
96,887 + MPMX19_05413 0.23 -0.7
96,888 - MPMX19_05413 0.23 -0.7
96,888 - MPMX19_05413 0.23 -1.4
96,888 - MPMX19_05413 0.23 -3.0
96,888 - MPMX19_05413 0.23 -0.1
96,888 - MPMX19_05413 0.23 -0.2
96,888 - MPMX19_05413 0.23 +0.4
96,888 - MPMX19_05413 0.23 +1.2
96,888 - MPMX19_05413 0.23 +0.6
96,888 - MPMX19_05413 0.23 -2.0
96,888 - MPMX19_05413 0.23 +0.6
96,995 - MPMX19_05413 0.27 -0.7

Or see this region's nucleotide sequence