Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05387 and MPMX19_05388 are separated by 73 nucleotides MPMX19_05388 and MPMX19_05389 are separated by 42 nucleotides MPMX19_05389 and MPMX19_05390 are separated by 210 nucleotides
MPMX19_05387: MPMX19_05387 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 64,052 to 64,537
_05387
MPMX19_05388: MPMX19_05388 - Leucine-responsive regulatory protein, at 64,611 to 65,036
_05388
MPMX19_05389: MPMX19_05389 - Pyruvate kinase, at 65,079 to 66,572
_05389
MPMX19_05390: MPMX19_05390 - hypothetical protein, at 66,783 to 69,773
_05390
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 64.178 kb on + strand, within MPMX19_05387 at 64.179 kb on - strand, within MPMX19_05387 at 64.179 kb on - strand, within MPMX19_05387 at 64.191 kb on - strand, within MPMX19_05387 at 64.250 kb on + strand, within MPMX19_05387 at 64.250 kb on + strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.515 kb on - strand at 64.535 kb on + strand at 64.536 kb on - strand at 64.536 kb on - strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.906 kb on - strand, within MPMX19_05388 at 64.906 kb on - strand, within MPMX19_05388 at 65.230 kb on + strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.491 kb on + strand, within MPMX19_05389 at 65.491 kb on + strand, within MPMX19_05389 at 65.492 kb on - strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 66.503 kb on + strand at 66.503 kb on + strand at 66.503 kb on + strand at 66.503 kb on + strand at 66.504 kb on - strand at 66.504 kb on - strand at 66.504 kb on - strand at 66.504 kb on - strand at 66.504 kb on - strand at 66.633 kb on - strand at 66.633 kb on - strand at 66.648 kb on + strand at 66.648 kb on + strand at 66.769 kb on + strand at 66.770 kb on - strand at 66.770 kb on - strand at 66.770 kb on - strand at 66.770 kb on - strand at 66.785 kb on - strand at 66.795 kb on + strand at 66.795 kb on + strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.796 kb on - strand at 66.798 kb on - strand at 66.798 kb on - strand at 66.834 kb on + strand at 66.910 kb on + strand at 66.984 kb on + strand at 67.046 kb on + strand at 67.046 kb on + strand at 67.047 kb on - strand at 67.047 kb on - strand at 67.048 kb on + strand at 67.048 kb on + strand at 67.048 kb on + strand at 67.048 kb on + strand at 67.049 kb on - strand at 67.080 kb on + strand at 67.081 kb on - strand at 67.113 kb on + strand, within MPMX19_05390 at 67.113 kb on + strand, within MPMX19_05390 at 67.113 kb on + strand, within MPMX19_05390 at 67.113 kb on + strand, within MPMX19_05390 at 67.113 kb on + strand, within MPMX19_05390 at 67.114 kb on - strand, within MPMX19_05390 at 67.114 kb on - strand, within MPMX19_05390 at 67.171 kb on - strand, within MPMX19_05390 at 67.216 kb on + strand, within MPMX19_05390 at 67.217 kb on - strand, within MPMX19_05390 at 67.228 kb on - strand, within MPMX19_05390 at 67.228 kb on - strand, within MPMX19_05390 at 67.228 kb on - strand, within MPMX19_05390 at 67.259 kb on + strand, within MPMX19_05390 at 67.259 kb on + strand, within MPMX19_05390 at 67.259 kb on + strand, within MPMX19_05390 at 67.260 kb on - strand, within MPMX19_05390 at 67.260 kb on - strand, within MPMX19_05390 at 67.260 kb on - strand, within MPMX19_05390 at 67.260 kb on - strand, within MPMX19_05390 at 67.260 kb on - strand, within MPMX19_05390 at 67.285 kb on + strand, within MPMX19_05390 at 67.285 kb on + strand, within MPMX19_05390 at 67.286 kb on - strand, within MPMX19_05390 at 67.286 kb on - strand, within MPMX19_05390 at 67.286 kb on - strand, within MPMX19_05390 at 67.286 kb on - strand, within MPMX19_05390 at 67.286 kb on - strand, within MPMX19_05390 at 67.334 kb on + strand, within MPMX19_05390 at 67.335 kb on - strand, within MPMX19_05390 at 67.423 kb on + strand, within MPMX19_05390 at 67.424 kb on - strand, within MPMX19_05390 at 67.424 kb on - strand, within MPMX19_05390 at 67.424 kb on - strand, within MPMX19_05390 at 67.445 kb on + strand, within MPMX19_05390 at 67.446 kb on - strand, within MPMX19_05390 at 67.446 kb on - strand, within MPMX19_05390 at 67.458 kb on + strand, within MPMX19_05390 at 67.459 kb on - strand, within MPMX19_05390 at 67.459 kb on - strand, within MPMX19_05390 at 67.512 kb on - strand, within MPMX19_05390 at 67.512 kb on - strand, within MPMX19_05390 at 67.516 kb on + strand, within MPMX19_05390 at 67.517 kb on - strand, within MPMX19_05390 at 67.517 kb on - strand, within MPMX19_05390 at 67.523 kb on + strand, within MPMX19_05390 at 67.523 kb on + strand, within MPMX19_05390 at 67.524 kb on - strand, within MPMX19_05390 at 67.524 kb on - strand, within MPMX19_05390
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 64,178 + MPMX19_05387 0.26 -0.6 64,179 - MPMX19_05387 0.26 -1.2 64,179 - MPMX19_05387 0.26 -1.6 64,191 - MPMX19_05387 0.29 +0.5 64,250 + MPMX19_05387 0.41 +0.4 64,250 + MPMX19_05387 0.41 -0.2 64,251 - MPMX19_05387 0.41 +0.4 64,251 - MPMX19_05387 0.41 -2.0 64,251 - MPMX19_05387 0.41 +0.0 64,515 - +1.9 64,535 + +0.2 64,536 - -2.0 64,536 - +0.6 64,546 + -1.3 64,546 + -1.6 64,546 + -0.8 64,546 + +0.4 64,546 + +1.0 64,546 + +0.3 64,546 + -0.9 64,546 + -0.4 64,546 + -0.3 64,546 + -1.3 64,546 + -0.6 64,546 + -0.8 64,546 + -2.2 64,547 - -2.5 64,547 - -1.2 64,547 - -1.8 64,547 - -0.4 64,547 - +1.0 64,547 - +0.6 64,577 + -0.7 64,577 + +0.8 64,577 + -0.5 64,577 + -2.2 64,577 + -0.4 64,577 + +1.1 64,577 + -0.3 64,577 + -1.4 64,577 + -2.0 64,577 + +0.8 64,577 + -0.5 64,577 + -0.8 64,577 + -0.4 64,577 + +0.2 64,577 + +0.3 64,577 + +1.8 64,578 - +0.6 64,578 - -1.3 64,578 - -1.6 64,578 - -0.1 64,578 - +0.1 64,578 - +0.0 64,578 - +0.4 64,578 - -2.6 64,578 - +0.0 64,578 - -0.4 64,578 - -2.0 64,578 - -0.3 64,578 - -0.2 64,578 - -0.3 64,578 - -0.4 64,760 + MPMX19_05388 0.35 +1.0 64,760 + MPMX19_05388 0.35 -0.2 64,760 + MPMX19_05388 0.35 +0.1 64,760 + MPMX19_05388 0.35 +0.1 64,760 + MPMX19_05388 0.35 -2.1 64,760 + MPMX19_05388 0.35 +0.6 64,761 - MPMX19_05388 0.35 -0.1 64,761 - MPMX19_05388 0.35 +0.4 64,761 - MPMX19_05388 0.35 +0.4 64,761 - MPMX19_05388 0.35 -0.5 64,761 - MPMX19_05388 0.35 +0.4 64,761 - MPMX19_05388 0.35 -0.5 64,761 - MPMX19_05388 0.35 +0.6 64,905 + MPMX19_05388 0.69 +0.0 64,905 + MPMX19_05388 0.69 -0.3 64,905 + MPMX19_05388 0.69 +0.0 64,906 - MPMX19_05388 0.69 +0.6 64,906 - MPMX19_05388 0.69 +0.9 65,230 + MPMX19_05389 0.10 -1.0 65,231 - MPMX19_05389 0.10 -0.3 65,231 - MPMX19_05389 0.10 -0.5 65,231 - MPMX19_05389 0.10 -1.4 65,231 - MPMX19_05389 0.10 -0.1 65,491 + MPMX19_05389 0.28 -0.8 65,491 + MPMX19_05389 0.28 +0.9 65,492 - MPMX19_05389 0.28 -1.1 65,605 + MPMX19_05389 0.35 -1.4 65,605 + MPMX19_05389 0.35 +0.2 65,605 + MPMX19_05389 0.35 +0.4 65,605 + MPMX19_05389 0.35 -0.6 65,605 + MPMX19_05389 0.35 -1.8 65,605 + MPMX19_05389 0.35 +0.3 65,606 - MPMX19_05389 0.35 -1.1 65,606 - MPMX19_05389 0.35 -0.4 65,606 - MPMX19_05389 0.35 -0.1 65,606 - MPMX19_05389 0.35 -0.4 65,606 - MPMX19_05389 0.35 -0.6 65,606 - MPMX19_05389 0.35 -1.2 65,606 - MPMX19_05389 0.35 -1.4 65,606 - MPMX19_05389 0.35 -0.8 66,503 + +0.2 66,503 + +0.4 66,503 + -1.7 66,503 + -1.1 66,504 - +0.0 66,504 - -2.4 66,504 - -0.4 66,504 - -0.6 66,504 - -1.2 66,633 - -0.2 66,633 - +3.2 66,648 + +0.1 66,648 + -0.2 66,769 + +0.7 66,770 - -0.3 66,770 - -0.3 66,770 - -1.8 66,770 - -1.2 66,785 - +0.6 66,795 + +0.0 66,795 + -1.0 66,796 - -0.3 66,796 - -2.4 66,796 - -0.7 66,796 - +0.5 66,798 - -0.1 66,798 - +0.5 66,834 + -0.7 66,910 + -2.7 66,984 + -0.5 67,046 + -0.6 67,046 + -0.4 67,047 - -1.1 67,047 - -0.7 67,048 + -0.4 67,048 + -0.8 67,048 + +0.8 67,048 + -1.0 67,049 - -0.7 67,080 + +0.6 67,081 - +0.3 67,113 + MPMX19_05390 0.11 +0.6 67,113 + MPMX19_05390 0.11 -1.2 67,113 + MPMX19_05390 0.11 -1.4 67,113 + MPMX19_05390 0.11 -0.2 67,113 + MPMX19_05390 0.11 -0.4 67,114 - MPMX19_05390 0.11 -1.5 67,114 - MPMX19_05390 0.11 -0.3 67,171 - MPMX19_05390 0.13 -0.8 67,216 + MPMX19_05390 0.14 -0.5 67,217 - MPMX19_05390 0.15 -2.1 67,228 - MPMX19_05390 0.15 -1.1 67,228 - MPMX19_05390 0.15 -0.1 67,228 - MPMX19_05390 0.15 -0.9 67,259 + MPMX19_05390 0.16 -0.1 67,259 + MPMX19_05390 0.16 +0.7 67,259 + MPMX19_05390 0.16 +1.0 67,260 - MPMX19_05390 0.16 -2.4 67,260 - MPMX19_05390 0.16 -2.0 67,260 - MPMX19_05390 0.16 -0.5 67,260 - MPMX19_05390 0.16 +0.6 67,260 - MPMX19_05390 0.16 +0.0 67,285 + MPMX19_05390 0.17 +0.3 67,285 + MPMX19_05390 0.17 +0.6 67,286 - MPMX19_05390 0.17 -0.3 67,286 - MPMX19_05390 0.17 +0.2 67,286 - MPMX19_05390 0.17 -2.0 67,286 - MPMX19_05390 0.17 -0.4 67,286 - MPMX19_05390 0.17 +0.6 67,334 + MPMX19_05390 0.18 +0.0 67,335 - MPMX19_05390 0.18 -0.6 67,423 + MPMX19_05390 0.21 +0.1 67,424 - MPMX19_05390 0.21 -0.8 67,424 - MPMX19_05390 0.21 +0.2 67,424 - MPMX19_05390 0.21 -0.7 67,445 + MPMX19_05390 0.22 -0.4 67,446 - MPMX19_05390 0.22 -3.1 67,446 - MPMX19_05390 0.22 -2.1 67,458 + MPMX19_05390 0.23 +0.4 67,459 - MPMX19_05390 0.23 +0.0 67,459 - MPMX19_05390 0.23 -0.2 67,512 - MPMX19_05390 0.24 +0.7 67,512 - MPMX19_05390 0.24 -0.2 67,516 + MPMX19_05390 0.25 +0.4 67,517 - MPMX19_05390 0.25 +0.2 67,517 - MPMX19_05390 0.25 -0.1 67,523 + MPMX19_05390 0.25 -0.4 67,523 + MPMX19_05390 0.25 +1.1 67,524 - MPMX19_05390 0.25 -2.1 67,524 - MPMX19_05390 0.25 +0.4
Or see this region's nucleotide sequence