Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05378 and MPMX19_05379 are separated by 261 nucleotides MPMX19_05379 and MPMX19_05380 are separated by 712 nucleotides
MPMX19_05378: MPMX19_05378 - hypothetical protein, at 51,047 to 52,564
_05378
MPMX19_05379: MPMX19_05379 - hypothetical protein, at 52,826 to 54,238
_05379
MPMX19_05380: MPMX19_05380 - hypothetical protein, at 54,951 to 55,703
_05380
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.852 kb on + strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.853 kb on - strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.985 kb on + strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 51.986 kb on - strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.011 kb on + strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.012 kb on - strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.314 kb on + strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.315 kb on - strand, within MPMX19_05378 at 52.328 kb on + strand, within MPMX19_05378 at 52.329 kb on - strand, within MPMX19_05378 at 52.329 kb on - strand, within MPMX19_05378 at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.507 kb on + strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.508 kb on - strand at 52.615 kb on - strand at 52.649 kb on - strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.827 kb on + strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 52.828 kb on - strand at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.239 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.333 kb on - strand at 54.333 kb on - strand at 54.526 kb on + strand at 54.526 kb on + strand at 54.526 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.567 kb on - strand at 54.567 kb on - strand at 54.630 kb on + strand at 54.630 kb on + strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.801 kb on + strand at 54.801 kb on + strand at 54.801 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.841 kb on + strand at 54.899 kb on + strand at 54.925 kb on - strand at 54.937 kb on + strand at 54.937 kb on + strand at 54.937 kb on + strand at 54.938 kb on - strand at 54.988 kb on + strand at 54.989 kb on - strand at 54.989 kb on - strand at 55.016 kb on - strand at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 51,852 + MPMX19_05378 0.53 -0.4 51,852 + MPMX19_05378 0.53 +0.0 51,852 + MPMX19_05378 0.53 -0.4 51,852 + MPMX19_05378 0.53 +0.6 51,852 + MPMX19_05378 0.53 -1.4 51,852 + MPMX19_05378 0.53 +2.2 51,852 + MPMX19_05378 0.53 +0.5 51,852 + MPMX19_05378 0.53 -0.7 51,852 + MPMX19_05378 0.53 +0.4 51,852 + MPMX19_05378 0.53 +0.1 51,852 + MPMX19_05378 0.53 -0.0 51,852 + MPMX19_05378 0.53 -0.0 51,852 + MPMX19_05378 0.53 -0.2 51,852 + MPMX19_05378 0.53 -0.4 51,853 - MPMX19_05378 0.53 -0.5 51,853 - MPMX19_05378 0.53 +0.4 51,853 - MPMX19_05378 0.53 -0.6 51,853 - MPMX19_05378 0.53 -0.6 51,853 - MPMX19_05378 0.53 -0.7 51,853 - MPMX19_05378 0.53 +0.6 51,853 - MPMX19_05378 0.53 -0.6 51,853 - MPMX19_05378 0.53 +1.1 51,853 - MPMX19_05378 0.53 +0.1 51,853 - MPMX19_05378 0.53 -3.2 51,985 + MPMX19_05378 0.62 -0.8 51,985 + MPMX19_05378 0.62 +0.2 51,985 + MPMX19_05378 0.62 +0.6 51,986 - MPMX19_05378 0.62 -1.4 51,986 - MPMX19_05378 0.62 +1.5 51,986 - MPMX19_05378 0.62 -0.1 51,986 - MPMX19_05378 0.62 -0.8 52,011 + MPMX19_05378 0.64 -0.3 52,011 + MPMX19_05378 0.64 +0.2 52,011 + MPMX19_05378 0.64 -0.2 52,011 + MPMX19_05378 0.64 -0.5 52,012 - MPMX19_05378 0.64 +0.0 52,012 - MPMX19_05378 0.64 +0.9 52,012 - MPMX19_05378 0.64 -1.6 52,012 - MPMX19_05378 0.64 +0.1 52,314 + MPMX19_05378 0.83 -1.2 52,314 + MPMX19_05378 0.83 +0.2 52,314 + MPMX19_05378 0.83 -0.8 52,314 + MPMX19_05378 0.83 +0.0 52,314 + MPMX19_05378 0.83 +0.1 52,314 + MPMX19_05378 0.83 +0.8 52,314 + MPMX19_05378 0.83 -1.2 52,314 + MPMX19_05378 0.83 +0.6 52,314 + MPMX19_05378 0.83 +0.6 52,314 + MPMX19_05378 0.83 +0.0 52,314 + MPMX19_05378 0.83 -0.1 52,314 + MPMX19_05378 0.83 -0.5 52,314 + MPMX19_05378 0.83 -1.0 52,314 + MPMX19_05378 0.83 -0.8 52,314 + MPMX19_05378 0.83 -0.7 52,314 + MPMX19_05378 0.83 -0.1 52,314 + MPMX19_05378 0.83 -0.4 52,315 - MPMX19_05378 0.84 +0.5 52,315 - MPMX19_05378 0.84 +1.0 52,315 - MPMX19_05378 0.84 -1.0 52,315 - MPMX19_05378 0.84 +0.9 52,315 - MPMX19_05378 0.84 -2.0 52,315 - MPMX19_05378 0.84 -0.4 52,315 - MPMX19_05378 0.84 +1.1 52,315 - MPMX19_05378 0.84 -2.0 52,315 - MPMX19_05378 0.84 -1.0 52,315 - MPMX19_05378 0.84 +0.5 52,315 - MPMX19_05378 0.84 +1.9 52,315 - MPMX19_05378 0.84 +0.8 52,315 - MPMX19_05378 0.84 +0.9 52,315 - MPMX19_05378 0.84 -0.4 52,315 - MPMX19_05378 0.84 -2.0 52,315 - MPMX19_05378 0.84 -0.0 52,315 - MPMX19_05378 0.84 -0.6 52,315 - MPMX19_05378 0.84 -1.0 52,315 - MPMX19_05378 0.84 -0.1 52,315 - MPMX19_05378 0.84 +0.8 52,328 + MPMX19_05378 0.84 -1.8 52,329 - MPMX19_05378 0.84 +0.2 52,329 - MPMX19_05378 0.84 +0.1 52,507 + -1.7 52,507 + -1.1 52,507 + +0.6 52,507 + +0.0 52,507 + -1.8 52,507 + -1.7 52,507 + -0.7 52,507 + -1.1 52,508 - -0.5 52,508 - -0.6 52,508 - -1.2 52,508 - -0.5 52,615 - -0.6 52,649 - -0.7 52,827 + -2.0 52,827 + -1.3 52,827 + -0.7 52,827 + -0.0 52,827 + -1.4 52,827 + -1.5 52,828 - -1.5 52,828 - +1.3 52,828 - -0.7 52,828 - -0.4 52,828 - -0.2 52,828 - -0.6 52,828 - -0.1 52,828 - +0.1 54,096 - MPMX19_05379 0.90 +0.1 54,096 - MPMX19_05379 0.90 -0.3 54,096 - MPMX19_05379 0.90 +0.5 54,096 - MPMX19_05379 0.90 -0.8 54,096 - MPMX19_05379 0.90 -1.7 54,096 - MPMX19_05379 0.90 -0.5 54,096 - MPMX19_05379 0.90 +0.3 54,096 - MPMX19_05379 0.90 -1.0 54,096 - MPMX19_05379 0.90 +0.6 54,239 - +0.0 54,296 - -0.5 54,296 - -0.2 54,296 - +0.8 54,296 - -0.6 54,333 - -0.6 54,333 - -1.7 54,526 + +0.6 54,526 + -1.1 54,526 + -0.2 54,566 + -0.4 54,566 + -0.6 54,566 + +0.3 54,566 + +0.2 54,567 - +0.5 54,567 - -1.1 54,630 + -1.7 54,630 + -1.5 54,631 - +0.2 54,631 - -0.3 54,631 - -0.3 54,631 - +0.8 54,631 - +0.8 54,801 + -0.4 54,801 + -0.3 54,801 + -0.4 54,818 + -0.5 54,818 + -0.8 54,818 + -0.5 54,818 + -0.2 54,818 + +0.8 54,818 + -1.2 54,818 + -1.3 54,818 + -0.3 54,818 + -1.2 54,818 + -0.6 54,818 + +0.6 54,818 + +1.0 54,818 + -2.3 54,818 + -1.3 54,818 + -0.3 54,819 - -0.2 54,819 - +0.4 54,819 - -0.7 54,819 - -1.1 54,819 - -0.6 54,819 - +0.7 54,841 + +0.0 54,899 + -1.4 54,925 - -1.7 54,937 + -0.5 54,937 + +0.0 54,937 + -0.8 54,938 - -0.5 54,988 + +0.0 54,989 - -1.6 54,989 - -0.7 55,016 - +0.3 55,165 + MPMX19_05380 0.28 -0.7 55,165 + MPMX19_05380 0.28 +0.4 55,165 + MPMX19_05380 0.28 -0.8 55,165 + MPMX19_05380 0.28 -0.0 55,165 + MPMX19_05380 0.28 +0.5 55,165 + MPMX19_05380 0.28 -0.8 55,165 + MPMX19_05380 0.28 -0.6 55,166 - MPMX19_05380 0.29 -2.8 55,166 - MPMX19_05380 0.29 +0.0 55,166 - MPMX19_05380 0.29 +0.1 55,166 - MPMX19_05380 0.29 -1.2 55,166 - MPMX19_05380 0.29 -0.3 55,166 - MPMX19_05380 0.29 +0.6 55,166 - MPMX19_05380 0.29 +1.1
Or see this region's nucleotide sequence