Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05334 and MPMX19_05335 overlap by 4 nucleotides MPMX19_05335 and MPMX19_05336 overlap by 4 nucleotides
MPMX19_05334: MPMX19_05334 - hypothetical protein, at 2,837 to 4,468
_05334
MPMX19_05335: MPMX19_05335 - hypothetical protein, at 4,465 to 5,736
_05335
MPMX19_05336: MPMX19_05336 - Ribosome-associated ATPase, at 5,733 to 8,570
_05336
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.512 kb on + strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.513 kb on - strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.650 kb on + strand, within MPMX19_05334 at 3.651 kb on - strand, within MPMX19_05334 at 3.651 kb on - strand, within MPMX19_05334 at 3.651 kb on - strand, within MPMX19_05334 at 3.651 kb on - strand, within MPMX19_05334 at 3.956 kb on + strand, within MPMX19_05334 at 4.064 kb on + strand, within MPMX19_05334 at 4.064 kb on + strand, within MPMX19_05334 at 4.064 kb on + strand, within MPMX19_05334 at 4.064 kb on + strand, within MPMX19_05334 at 4.064 kb on + strand, within MPMX19_05334 at 4.065 kb on - strand, within MPMX19_05334 at 4.065 kb on - strand, within MPMX19_05334 at 4.334 kb on + strand at 4.334 kb on + strand at 4.334 kb on + strand at 4.334 kb on + strand at 4.335 kb on - strand at 4.335 kb on - strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.627 kb on + strand, within MPMX19_05335 at 4.627 kb on + strand, within MPMX19_05335 at 4.627 kb on + strand, within MPMX19_05335 at 4.627 kb on + strand, within MPMX19_05335 at 4.627 kb on + strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 4.628 kb on - strand, within MPMX19_05335 at 5.054 kb on - strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.128 kb on + strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.129 kb on - strand, within MPMX19_05335 at 5.350 kb on + strand, within MPMX19_05335 at 5.350 kb on + strand, within MPMX19_05335 at 5.350 kb on + strand, within MPMX19_05335 at 5.351 kb on - strand, within MPMX19_05335 at 5.351 kb on - strand, within MPMX19_05335 at 5.351 kb on - strand, within MPMX19_05335 at 5.351 kb on - strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.389 kb on + strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.390 kb on - strand, within MPMX19_05335 at 5.473 kb on - strand, within MPMX19_05335 at 5.473 kb on - strand, within MPMX19_05335 at 5.473 kb on - strand, within MPMX19_05335 at 5.473 kb on - strand, within MPMX19_05335 at 5.573 kb on + strand, within MPMX19_05335 at 5.573 kb on + strand, within MPMX19_05335 at 5.573 kb on + strand, within MPMX19_05335 at 5.573 kb on + strand, within MPMX19_05335 at 5.778 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.985 kb on + strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 5.986 kb on - strand at 6.015 kb on + strand at 6.015 kb on + strand at 6.015 kb on + strand at 6.015 kb on + strand at 6.016 kb on - strand at 6.016 kb on - strand at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.336 kb on + strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336 at 6.337 kb on - strand, within MPMX19_05336
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 3,512 + MPMX19_05334 0.41 -1.2 3,512 + MPMX19_05334 0.41 -0.7 3,512 + MPMX19_05334 0.41 -2.0 3,512 + MPMX19_05334 0.41 +0.0 3,512 + MPMX19_05334 0.41 -1.7 3,512 + MPMX19_05334 0.41 +0.2 3,512 + MPMX19_05334 0.41 -0.4 3,512 + MPMX19_05334 0.41 -0.4 3,513 - MPMX19_05334 0.41 -0.1 3,513 - MPMX19_05334 0.41 -0.0 3,513 - MPMX19_05334 0.41 +0.9 3,513 - MPMX19_05334 0.41 -1.4 3,513 - MPMX19_05334 0.41 +0.5 3,513 - MPMX19_05334 0.41 +3.4 3,513 - MPMX19_05334 0.41 -0.2 3,513 - MPMX19_05334 0.41 -0.2 3,650 + MPMX19_05334 0.50 -0.9 3,650 + MPMX19_05334 0.50 -1.0 3,650 + MPMX19_05334 0.50 +0.0 3,650 + MPMX19_05334 0.50 -0.5 3,650 + MPMX19_05334 0.50 -1.3 3,650 + MPMX19_05334 0.50 -2.6 3,650 + MPMX19_05334 0.50 -1.1 3,651 - MPMX19_05334 0.50 +0.6 3,651 - MPMX19_05334 0.50 -1.2 3,651 - MPMX19_05334 0.50 +0.8 3,651 - MPMX19_05334 0.50 +0.2 3,956 + MPMX19_05334 0.69 +0.3 4,064 + MPMX19_05334 0.75 +0.1 4,064 + MPMX19_05334 0.75 +0.0 4,064 + MPMX19_05334 0.75 -1.2 4,064 + MPMX19_05334 0.75 +0.8 4,064 + MPMX19_05334 0.75 +0.0 4,065 - MPMX19_05334 0.75 +0.4 4,065 - MPMX19_05334 0.75 -0.3 4,334 + -1.5 4,334 + -0.2 4,334 + -0.4 4,334 + +0.6 4,335 - +0.4 4,335 - -0.7 4,531 + +0.1 4,531 + +0.5 4,532 - -0.4 4,532 - -0.6 4,532 - -0.7 4,627 + MPMX19_05335 0.13 -1.8 4,627 + MPMX19_05335 0.13 -0.6 4,627 + MPMX19_05335 0.13 -1.7 4,627 + MPMX19_05335 0.13 -0.0 4,627 + MPMX19_05335 0.13 +1.4 4,628 - MPMX19_05335 0.13 -0.8 4,628 - MPMX19_05335 0.13 -2.0 4,628 - MPMX19_05335 0.13 -0.9 4,628 - MPMX19_05335 0.13 +0.4 4,628 - MPMX19_05335 0.13 -0.4 4,628 - MPMX19_05335 0.13 -1.1 4,628 - MPMX19_05335 0.13 -0.1 4,628 - MPMX19_05335 0.13 -2.1 5,054 - MPMX19_05335 0.46 -1.0 5,128 + MPMX19_05335 0.52 -0.2 5,128 + MPMX19_05335 0.52 -0.4 5,128 + MPMX19_05335 0.52 -0.8 5,128 + MPMX19_05335 0.52 +1.4 5,128 + MPMX19_05335 0.52 +0.0 5,128 + MPMX19_05335 0.52 -0.5 5,128 + MPMX19_05335 0.52 -0.3 5,128 + MPMX19_05335 0.52 -0.4 5,128 + MPMX19_05335 0.52 -0.4 5,128 + MPMX19_05335 0.52 +0.1 5,128 + MPMX19_05335 0.52 -1.0 5,128 + MPMX19_05335 0.52 +0.3 5,128 + MPMX19_05335 0.52 +0.8 5,128 + MPMX19_05335 0.52 +0.4 5,128 + MPMX19_05335 0.52 -0.3 5,128 + MPMX19_05335 0.52 -0.1 5,128 + MPMX19_05335 0.52 +0.3 5,128 + MPMX19_05335 0.52 -0.5 5,128 + MPMX19_05335 0.52 -0.4 5,129 - MPMX19_05335 0.52 -0.7 5,129 - MPMX19_05335 0.52 -0.9 5,129 - MPMX19_05335 0.52 -2.4 5,129 - MPMX19_05335 0.52 -1.0 5,129 - MPMX19_05335 0.52 -1.8 5,129 - MPMX19_05335 0.52 -0.5 5,129 - MPMX19_05335 0.52 -0.4 5,129 - MPMX19_05335 0.52 +0.8 5,129 - MPMX19_05335 0.52 -1.8 5,129 - MPMX19_05335 0.52 +0.2 5,129 - MPMX19_05335 0.52 -1.8 5,129 - MPMX19_05335 0.52 -0.4 5,129 - MPMX19_05335 0.52 +0.3 5,129 - MPMX19_05335 0.52 -0.8 5,129 - MPMX19_05335 0.52 -0.6 5,129 - MPMX19_05335 0.52 -0.1 5,129 - MPMX19_05335 0.52 +0.0 5,350 + MPMX19_05335 0.70 -1.2 5,350 + MPMX19_05335 0.70 -1.0 5,350 + MPMX19_05335 0.70 -0.7 5,351 - MPMX19_05335 0.70 -0.7 5,351 - MPMX19_05335 0.70 -0.9 5,351 - MPMX19_05335 0.70 +0.1 5,351 - MPMX19_05335 0.70 +0.3 5,389 + MPMX19_05335 0.73 -1.0 5,389 + MPMX19_05335 0.73 +0.1 5,389 + MPMX19_05335 0.73 -0.2 5,389 + MPMX19_05335 0.73 -0.1 5,389 + MPMX19_05335 0.73 +0.0 5,389 + MPMX19_05335 0.73 -0.7 5,389 + MPMX19_05335 0.73 -0.6 5,389 + MPMX19_05335 0.73 +0.3 5,389 + MPMX19_05335 0.73 +0.8 5,389 + MPMX19_05335 0.73 -0.3 5,389 + MPMX19_05335 0.73 -0.7 5,389 + MPMX19_05335 0.73 -0.4 5,390 - MPMX19_05335 0.73 -1.2 5,390 - MPMX19_05335 0.73 -0.2 5,390 - MPMX19_05335 0.73 -2.2 5,390 - MPMX19_05335 0.73 -2.5 5,390 - MPMX19_05335 0.73 -0.5 5,390 - MPMX19_05335 0.73 -1.0 5,390 - MPMX19_05335 0.73 +0.4 5,390 - MPMX19_05335 0.73 +0.9 5,390 - MPMX19_05335 0.73 -0.4 5,390 - MPMX19_05335 0.73 -0.4 5,390 - MPMX19_05335 0.73 -1.1 5,390 - MPMX19_05335 0.73 -1.4 5,390 - MPMX19_05335 0.73 +0.1 5,390 - MPMX19_05335 0.73 -0.8 5,390 - MPMX19_05335 0.73 -0.7 5,390 - MPMX19_05335 0.73 -0.4 5,473 - MPMX19_05335 0.79 -0.6 5,473 - MPMX19_05335 0.79 +0.8 5,473 - MPMX19_05335 0.79 +0.5 5,473 - MPMX19_05335 0.79 -0.1 5,573 + MPMX19_05335 0.87 -0.6 5,573 + MPMX19_05335 0.87 -0.4 5,573 + MPMX19_05335 0.87 -0.8 5,573 + MPMX19_05335 0.87 +0.9 5,778 + -0.6 5,985 + +0.5 5,985 + -0.6 5,985 + +0.8 5,985 + -1.6 5,985 + +0.1 5,985 + -0.8 5,985 + +0.3 5,985 + -2.1 5,986 - +0.8 5,986 - +0.4 5,986 - -0.6 5,986 - +0.2 5,986 - +0.3 5,986 - -1.2 5,986 - +0.0 5,986 - -0.6 5,986 - +0.1 5,986 - -1.7 6,015 + -0.4 6,015 + -1.2 6,015 + +2.2 6,015 + +1.1 6,016 - -2.5 6,016 - +0.8 6,336 + MPMX19_05336 0.21 -1.6 6,336 + MPMX19_05336 0.21 +0.7 6,336 + MPMX19_05336 0.21 +0.1 6,336 + MPMX19_05336 0.21 +0.6 6,336 + MPMX19_05336 0.21 -0.4 6,336 + MPMX19_05336 0.21 -0.8 6,336 + MPMX19_05336 0.21 -1.8 6,336 + MPMX19_05336 0.21 +0.2 6,336 + MPMX19_05336 0.21 +1.3 6,336 + MPMX19_05336 0.21 +1.0 6,336 + MPMX19_05336 0.21 +0.3 6,336 + MPMX19_05336 0.21 -0.2 6,336 + MPMX19_05336 0.21 -0.8 6,336 + MPMX19_05336 0.21 -1.0 6,336 + MPMX19_05336 0.21 +0.8 6,337 - MPMX19_05336 0.21 +0.5 6,337 - MPMX19_05336 0.21 +0.2 6,337 - MPMX19_05336 0.21 +0.1 6,337 - MPMX19_05336 0.21 -0.4 6,337 - MPMX19_05336 0.21 +1.1 6,337 - MPMX19_05336 0.21 +0.5 6,337 - MPMX19_05336 0.21 -0.2 6,337 - MPMX19_05336 0.21 -0.5 6,337 - MPMX19_05336 0.21 -1.6 6,337 - MPMX19_05336 0.21 -0.8 6,337 - MPMX19_05336 0.21 -0.3 6,337 - MPMX19_05336 0.21 -0.7 6,337 - MPMX19_05336 0.21 +1.8 6,337 - MPMX19_05336 0.21 -0.7 6,337 - MPMX19_05336 0.21 -0.3 6,337 - MPMX19_05336 0.21 -0.8 6,337 - MPMX19_05336 0.21 +0.3 6,337 - MPMX19_05336 0.21 +0.9 6,337 - MPMX19_05336 0.21 +1.2 6,337 - MPMX19_05336 0.21 -0.3 6,337 - MPMX19_05336 0.21 -0.5 6,337 - MPMX19_05336 0.21 -0.7 6,337 - MPMX19_05336 0.21 -0.1 6,337 - MPMX19_05336 0.21 +0.2
Or see this region's nucleotide sequence