Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05321

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05320 and MPMX19_05321 are separated by 140 nucleotidesMPMX19_05321 and MPMX19_05322 overlap by 8 nucleotides MPMX19_05320: MPMX19_05320 - hypothetical protein, at 859,630 to 860,904 _05320 MPMX19_05321: MPMX19_05321 - Multicopper oxidase mco, at 861,045 to 862,529 _05321 MPMX19_05322: MPMX19_05322 - hypothetical protein, at 862,522 to 863,796 _05322 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 860.231 kb on - strand, within MPMX19_05320at 860.281 kb on + strand, within MPMX19_05320at 860.281 kb on + strand, within MPMX19_05320at 860.282 kb on - strand, within MPMX19_05320at 860.282 kb on - strand, within MPMX19_05320at 860.282 kb on - strand, within MPMX19_05320at 860.427 kb on - strand, within MPMX19_05320at 860.427 kb on - strand, within MPMX19_05320at 860.427 kb on - strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.431 kb on + strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.432 kb on - strand, within MPMX19_05320at 860.530 kb on + strand, within MPMX19_05320at 860.530 kb on + strand, within MPMX19_05320at 860.530 kb on + strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.531 kb on - strand, within MPMX19_05320at 860.533 kb on + strand, within MPMX19_05320at 860.533 kb on + strand, within MPMX19_05320at 860.534 kb on - strand, within MPMX19_05320at 860.534 kb on - strand, within MPMX19_05320at 860.534 kb on - strand, within MPMX19_05320at 860.534 kb on - strand, within MPMX19_05320at 860.560 kb on + strand, within MPMX19_05320at 860.560 kb on + strand, within MPMX19_05320at 860.560 kb on + strand, within MPMX19_05320at 860.560 kb on + strand, within MPMX19_05320at 860.561 kb on - strand, within MPMX19_05320at 860.561 kb on - strand, within MPMX19_05320at 860.561 kb on - strand, within MPMX19_05320at 860.572 kb on + strand, within MPMX19_05320at 860.572 kb on + strand, within MPMX19_05320at 860.572 kb on + strand, within MPMX19_05320at 860.572 kb on + strand, within MPMX19_05320at 860.572 kb on + strand, within MPMX19_05320at 860.573 kb on - strand, within MPMX19_05320at 860.573 kb on - strand, within MPMX19_05320at 860.573 kb on - strand, within MPMX19_05320at 860.573 kb on - strand, within MPMX19_05320at 860.573 kb on - strand, within MPMX19_05320at 860.731 kb on + strand, within MPMX19_05320at 860.731 kb on + strand, within MPMX19_05320at 860.731 kb on + strand, within MPMX19_05320at 860.731 kb on + strand, within MPMX19_05320at 860.731 kb on + strand, within MPMX19_05320at 860.732 kb on - strand, within MPMX19_05320at 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.902 kb on + strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 860.903 kb on - strandat 861.291 kb on + strand, within MPMX19_05321at 861.291 kb on + strand, within MPMX19_05321at 861.291 kb on + strand, within MPMX19_05321at 861.291 kb on + strand, within MPMX19_05321at 861.291 kb on + strand, within MPMX19_05321at 861.291 kb on + strand, within MPMX19_05321at 861.291 kb on + strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.292 kb on - strand, within MPMX19_05321at 861.432 kb on + strand, within MPMX19_05321at 861.433 kb on - strand, within MPMX19_05321at 861.474 kb on + strand, within MPMX19_05321at 861.475 kb on - strand, within MPMX19_05321at 861.475 kb on - strand, within MPMX19_05321at 861.475 kb on - strand, within MPMX19_05321at 861.777 kb on + strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.778 kb on - strand, within MPMX19_05321at 861.966 kb on + strand, within MPMX19_05321at 861.966 kb on + strand, within MPMX19_05321at 861.966 kb on + strand, within MPMX19_05321at 861.967 kb on - strand, within MPMX19_05321at 861.967 kb on - strand, within MPMX19_05321at 861.967 kb on - strand, within MPMX19_05321at 862.164 kb on + strand, within MPMX19_05321at 862.164 kb on + strand, within MPMX19_05321at 862.164 kb on + strand, within MPMX19_05321at 862.165 kb on - strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.284 kb on + strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.285 kb on - strand, within MPMX19_05321at 862.341 kb on + strand, within MPMX19_05321at 862.341 kb on + strand, within MPMX19_05321at 862.341 kb on + strand, within MPMX19_05321at 862.342 kb on - strand, within MPMX19_05321at 862.342 kb on - strand, within MPMX19_05321at 862.342 kb on - strand, within MPMX19_05321at 862.512 kb on + strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.513 kb on - strandat 862.534 kb on - strandat 862.693 kb on + strand, within MPMX19_05322at 862.693 kb on + strand, within MPMX19_05322at 862.693 kb on + strand, within MPMX19_05322at 862.693 kb on + strand, within MPMX19_05322at 862.694 kb on - strand, within MPMX19_05322at 862.694 kb on - strand, within MPMX19_05322at 862.694 kb on - strand, within MPMX19_05322at 862.783 kb on + strand, within MPMX19_05322at 862.783 kb on + strand, within MPMX19_05322at 862.783 kb on + strand, within MPMX19_05322at 862.784 kb on - strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.813 kb on + strand, within MPMX19_05322at 862.879 kb on + strand, within MPMX19_05322at 862.961 kb on - strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.113 kb on + strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.114 kb on - strand, within MPMX19_05322at 863.256 kb on + strand, within MPMX19_05322at 863.256 kb on + strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.257 kb on - strand, within MPMX19_05322at 863.356 kb on + strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.357 kb on - strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.526 kb on + strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322at 863.527 kb on - strand, within MPMX19_05322

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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860,231 - MPMX19_05320 0.47 -1.3
860,281 + MPMX19_05320 0.51 -1.7
860,281 + MPMX19_05320 0.51 -1.8
860,282 - MPMX19_05320 0.51 -0.5
860,282 - MPMX19_05320 0.51 -0.3
860,282 - MPMX19_05320 0.51 +1.0
860,427 - MPMX19_05320 0.63 -0.7
860,427 - MPMX19_05320 0.63 -0.5
860,427 - MPMX19_05320 0.63 -1.3
860,431 + MPMX19_05320 0.63 -0.3
860,431 + MPMX19_05320 0.63 +1.1
860,431 + MPMX19_05320 0.63 +0.7
860,431 + MPMX19_05320 0.63 +0.7
860,431 + MPMX19_05320 0.63 +0.5
860,431 + MPMX19_05320 0.63 -1.7
860,431 + MPMX19_05320 0.63 -0.2
860,431 + MPMX19_05320 0.63 -1.0
860,432 - MPMX19_05320 0.63 -0.3
860,432 - MPMX19_05320 0.63 +0.5
860,432 - MPMX19_05320 0.63 -0.1
860,432 - MPMX19_05320 0.63 +1.5
860,432 - MPMX19_05320 0.63 -2.0
860,432 - MPMX19_05320 0.63 -0.0
860,432 - MPMX19_05320 0.63 +2.1
860,432 - MPMX19_05320 0.63 -0.3
860,530 + MPMX19_05320 0.71 -0.3
860,530 + MPMX19_05320 0.71 -0.2
860,530 + MPMX19_05320 0.71 -1.5
860,531 - MPMX19_05320 0.71 -0.1
860,531 - MPMX19_05320 0.71 -0.5
860,531 - MPMX19_05320 0.71 -0.4
860,531 - MPMX19_05320 0.71 +3.7
860,531 - MPMX19_05320 0.71 -1.0
860,531 - MPMX19_05320 0.71 +0.8
860,531 - MPMX19_05320 0.71 -0.8
860,533 + MPMX19_05320 0.71 -0.4
860,533 + MPMX19_05320 0.71 -1.0
860,534 - MPMX19_05320 0.71 -1.2
860,534 - MPMX19_05320 0.71 +0.8
860,534 - MPMX19_05320 0.71 -0.8
860,534 - MPMX19_05320 0.71 +0.4
860,560 + MPMX19_05320 0.73 +0.3
860,560 + MPMX19_05320 0.73 -1.7
860,560 + MPMX19_05320 0.73 +1.4
860,560 + MPMX19_05320 0.73 +2.0
860,561 - MPMX19_05320 0.73 +0.5
860,561 - MPMX19_05320 0.73 -0.1
860,561 - MPMX19_05320 0.73 -1.0
860,572 + MPMX19_05320 0.74 -0.7
860,572 + MPMX19_05320 0.74 +0.6
860,572 + MPMX19_05320 0.74 -1.6
860,572 + MPMX19_05320 0.74 +0.5
860,572 + MPMX19_05320 0.74 -0.8
860,573 - MPMX19_05320 0.74 +0.5
860,573 - MPMX19_05320 0.74 -0.4
860,573 - MPMX19_05320 0.74 -1.1
860,573 - MPMX19_05320 0.74 +0.5
860,573 - MPMX19_05320 0.74 -2.6
860,731 + MPMX19_05320 0.86 -1.8
860,731 + MPMX19_05320 0.86 -0.5
860,731 + MPMX19_05320 0.86 +0.0
860,731 + MPMX19_05320 0.86 -2.0
860,731 + MPMX19_05320 0.86 -1.3
860,732 - MPMX19_05320 0.86 +0.5
860,902 + -1.7
860,902 + +0.2
860,902 + +0.9
860,902 + +0.2
860,902 + +0.3
860,902 + -0.1
860,902 + +1.0
860,902 + -0.1
860,902 + +0.2
860,902 + -0.6
860,902 + -1.0
860,902 + +0.7
860,902 + +1.5
860,902 + +0.6
860,902 + -0.5
860,902 + +0.3
860,902 + +0.5
860,902 + -0.5
860,903 - +0.2
860,903 - -0.6
860,903 - -1.4
860,903 - +0.3
860,903 - -0.1
860,903 - +0.2
860,903 - -1.1
860,903 - +0.1
860,903 - +0.9
860,903 - -1.0
860,903 - -0.5
860,903 - +0.5
860,903 - +0.7
860,903 - +0.7
860,903 - -0.1
860,903 - +0.5
861,291 + MPMX19_05321 0.17 -2.4
861,291 + MPMX19_05321 0.17 +0.3
861,291 + MPMX19_05321 0.17 +1.0
861,291 + MPMX19_05321 0.17 -1.5
861,291 + MPMX19_05321 0.17 -0.5
861,291 + MPMX19_05321 0.17 -0.5
861,291 + MPMX19_05321 0.17 +1.0
861,292 - MPMX19_05321 0.17 -0.7
861,292 - MPMX19_05321 0.17 -0.8
861,292 - MPMX19_05321 0.17 -2.2
861,292 - MPMX19_05321 0.17 -0.4
861,292 - MPMX19_05321 0.17 -1.3
861,292 - MPMX19_05321 0.17 +0.0
861,292 - MPMX19_05321 0.17 +0.1
861,292 - MPMX19_05321 0.17 -0.1
861,292 - MPMX19_05321 0.17 +0.6
861,292 - MPMX19_05321 0.17 +0.4
861,432 + MPMX19_05321 0.26 -0.4
861,433 - MPMX19_05321 0.26 -0.7
861,474 + MPMX19_05321 0.29 -0.3
861,475 - MPMX19_05321 0.29 +0.4
861,475 - MPMX19_05321 0.29 -0.4
861,475 - MPMX19_05321 0.29 +0.0
861,777 + MPMX19_05321 0.49 -1.8
861,778 - MPMX19_05321 0.49 -0.3
861,778 - MPMX19_05321 0.49 +1.6
861,778 - MPMX19_05321 0.49 -1.7
861,778 - MPMX19_05321 0.49 +0.6
861,778 - MPMX19_05321 0.49 +0.6
861,966 + MPMX19_05321 0.62 +0.8
861,966 + MPMX19_05321 0.62 +0.1
861,966 + MPMX19_05321 0.62 +1.2
861,967 - MPMX19_05321 0.62 +1.0
861,967 - MPMX19_05321 0.62 -0.8
861,967 - MPMX19_05321 0.62 -0.4
862,164 + MPMX19_05321 0.75 +0.9
862,164 + MPMX19_05321 0.75 +0.3
862,164 + MPMX19_05321 0.75 +0.5
862,165 - MPMX19_05321 0.75 -0.8
862,284 + MPMX19_05321 0.83 -0.2
862,284 + MPMX19_05321 0.83 -2.6
862,284 + MPMX19_05321 0.83 -0.3
862,284 + MPMX19_05321 0.83 -0.2
862,284 + MPMX19_05321 0.83 +1.5
862,284 + MPMX19_05321 0.83 +0.4
862,284 + MPMX19_05321 0.83 -0.2
862,284 + MPMX19_05321 0.83 +1.7
862,284 + MPMX19_05321 0.83 -2.9
862,284 + MPMX19_05321 0.83 -0.8
862,284 + MPMX19_05321 0.83 -0.5
862,285 - MPMX19_05321 0.84 -1.1
862,285 - MPMX19_05321 0.84 +0.5
862,285 - MPMX19_05321 0.84 +0.3
862,285 - MPMX19_05321 0.84 +0.3
862,285 - MPMX19_05321 0.84 -0.3
862,285 - MPMX19_05321 0.84 -0.0
862,285 - MPMX19_05321 0.84 -1.4
862,285 - MPMX19_05321 0.84 +1.0
862,285 - MPMX19_05321 0.84 -0.1
862,285 - MPMX19_05321 0.84 +0.2
862,341 + MPMX19_05321 0.87 +1.5
862,341 + MPMX19_05321 0.87 +0.7
862,341 + MPMX19_05321 0.87 +0.5
862,342 - MPMX19_05321 0.87 +0.7
862,342 - MPMX19_05321 0.87 -0.3
862,342 - MPMX19_05321 0.87 +0.5
862,512 + -2.0
862,513 - +0.5
862,513 - -1.1
862,513 - +0.7
862,513 - -0.5
862,513 - -0.3
862,513 - -0.8
862,513 - +0.2
862,513 - -1.2
862,513 - +0.0
862,534 - +0.6
862,693 + MPMX19_05322 0.13 +1.5
862,693 + MPMX19_05322 0.13 -0.3
862,693 + MPMX19_05322 0.13 -1.5
862,693 + MPMX19_05322 0.13 +0.4
862,694 - MPMX19_05322 0.13 -1.8
862,694 - MPMX19_05322 0.13 -0.3
862,694 - MPMX19_05322 0.13 -0.5
862,783 + MPMX19_05322 0.20 -0.5
862,783 + MPMX19_05322 0.20 +1.9
862,783 + MPMX19_05322 0.20 +0.1
862,784 - MPMX19_05322 0.21 -0.4
862,813 + MPMX19_05322 0.23 -0.3
862,813 + MPMX19_05322 0.23 -0.3
862,813 + MPMX19_05322 0.23 +1.1
862,813 + MPMX19_05322 0.23 -0.5
862,813 + MPMX19_05322 0.23 +0.3
862,879 + MPMX19_05322 0.28 -0.6
862,961 - MPMX19_05322 0.34 -0.8
863,113 + MPMX19_05322 0.46 +1.5
863,113 + MPMX19_05322 0.46 -0.1
863,113 + MPMX19_05322 0.46 -1.3
863,113 + MPMX19_05322 0.46 +0.3
863,113 + MPMX19_05322 0.46 -1.1
863,114 - MPMX19_05322 0.46 +1.3
863,114 - MPMX19_05322 0.46 -1.7
863,114 - MPMX19_05322 0.46 -0.3
863,256 + MPMX19_05322 0.58 -0.4
863,256 + MPMX19_05322 0.58 -0.4
863,257 - MPMX19_05322 0.58 -2.0
863,257 - MPMX19_05322 0.58 -0.4
863,257 - MPMX19_05322 0.58 +0.7
863,257 - MPMX19_05322 0.58 -0.1
863,257 - MPMX19_05322 0.58 +1.5
863,257 - MPMX19_05322 0.58 -0.3
863,356 + MPMX19_05322 0.65 +0.9
863,357 - MPMX19_05322 0.65 +0.3
863,357 - MPMX19_05322 0.65 -0.3
863,357 - MPMX19_05322 0.65 -0.5
863,526 + MPMX19_05322 0.79 -0.0
863,526 + MPMX19_05322 0.79 -1.7
863,526 + MPMX19_05322 0.79 -0.8
863,526 + MPMX19_05322 0.79 +0.2
863,526 + MPMX19_05322 0.79 +1.0
863,526 + MPMX19_05322 0.79 +0.7
863,527 - MPMX19_05322 0.79 +0.9
863,527 - MPMX19_05322 0.79 +0.0
863,527 - MPMX19_05322 0.79 +0.2
863,527 - MPMX19_05322 0.79 +1.1

Or see this region's nucleotide sequence