Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05263

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05261 and MPMX19_05262 are separated by 90 nucleotidesMPMX19_05262 and MPMX19_05263 are separated by 6 nucleotidesMPMX19_05263 and MPMX19_05264 are separated by 233 nucleotidesMPMX19_05264 and MPMX19_05265 are separated by 23 nucleotides MPMX19_05261: MPMX19_05261 - Multidrug resistance protein MdtE, at 796,039 to 797,157 _05261 MPMX19_05262: MPMX19_05262 - hypothetical protein, at 797,248 to 797,880 _05262 MPMX19_05263: MPMX19_05263 - hypothetical protein, at 797,887 to 799,308 _05263 MPMX19_05264: MPMX19_05264 - hypothetical protein, at 799,542 to 800,015 _05264 MPMX19_05265: MPMX19_05265 - hypothetical protein, at 800,039 to 800,668 _05265 Position (kb) 797 798 799 800Strain fitness (log2 ratio) -2 -1 0 1 2at 797.158 kb on - strandat 797.158 kb on - strandat 797.158 kb on - strandat 797.158 kb on - strandat 797.159 kb on - strandat 797.185 kb on + strandat 797.186 kb on - strandat 797.186 kb on - strandat 797.186 kb on - strandat 797.190 kb on + strandat 797.190 kb on + strandat 797.191 kb on - strandat 797.191 kb on - strandat 797.191 kb on - strandat 797.197 kb on - strandat 797.204 kb on + strandat 797.205 kb on - strandat 797.205 kb on - strandat 797.239 kb on + strandat 797.240 kb on - strandat 797.240 kb on - strandat 797.240 kb on - strandat 797.351 kb on - strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.638 kb on + strand, within MPMX19_05262at 797.638 kb on + strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.777 kb on - strand, within MPMX19_05262at 797.777 kb on - strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.790 kb on - strand, within MPMX19_05262at 797.888 kb on + strandat 797.889 kb on - strandat 797.903 kb on + strandat 797.903 kb on + strandat 797.903 kb on + strandat 797.904 kb on - strandat 798.062 kb on + strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.080 kb on + strand, within MPMX19_05263at 798.080 kb on + strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.174 kb on - strand, within MPMX19_05263at 798.449 kb on + strand, within MPMX19_05263at 798.450 kb on - strand, within MPMX19_05263at 798.563 kb on + strand, within MPMX19_05263at 798.564 kb on - strand, within MPMX19_05263at 798.695 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.777 kb on - strand, within MPMX19_05263at 798.777 kb on - strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.887 kb on + strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 798.888 kb on - strand, within MPMX19_05263at 799.315 kb on - strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.330 kb on + strandat 799.382 kb on + strandat 799.382 kb on + strandat 799.383 kb on - strandat 799.478 kb on + strandat 799.478 kb on + strandat 799.479 kb on - strandat 799.647 kb on + strand, within MPMX19_05264at 799.647 kb on + strand, within MPMX19_05264at 799.647 kb on + strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.648 kb on - strand, within MPMX19_05264at 799.679 kb on + strand, within MPMX19_05264at 799.679 kb on + strand, within MPMX19_05264at 799.679 kb on + strand, within MPMX19_05264at 799.680 kb on - strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.899 kb on + strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 799.900 kb on - strand, within MPMX19_05264at 800.055 kb on + strandat 800.190 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.208 kb on + strand, within MPMX19_05265at 800.209 kb on - strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.223 kb on + strand, within MPMX19_05265at 800.224 kb on - strand, within MPMX19_05265at 800.224 kb on - strand, within MPMX19_05265at 800.224 kb on - strand, within MPMX19_05265

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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797,158 - -0.8
797,158 - -0.1
797,158 - -0.5
797,158 - -0.3
797,159 - +1.9
797,185 + -0.1
797,186 - -0.9
797,186 - +0.1
797,186 - -0.4
797,190 + -0.4
797,190 + +0.0
797,191 - -0.8
797,191 - -0.5
797,191 - -0.6
797,197 - -0.9
797,204 + +0.3
797,205 - -0.3
797,205 - -1.8
797,239 + -0.3
797,240 - +0.2
797,240 - -2.3
797,240 - -0.6
797,351 - MPMX19_05262 0.16 -0.5
797,410 + MPMX19_05262 0.26 +0.3
797,410 + MPMX19_05262 0.26 -0.9
797,410 + MPMX19_05262 0.26 -0.2
797,410 + MPMX19_05262 0.26 +0.1
797,411 - MPMX19_05262 0.26 +0.5
797,411 - MPMX19_05262 0.26 +0.3
797,411 - MPMX19_05262 0.26 +1.3
797,411 - MPMX19_05262 0.26 +1.8
797,411 - MPMX19_05262 0.26 -0.1
797,411 - MPMX19_05262 0.26 +0.5
797,411 - MPMX19_05262 0.26 -1.3
797,440 + MPMX19_05262 0.30 -0.0
797,440 + MPMX19_05262 0.30 +0.9
797,440 + MPMX19_05262 0.30 -0.4
797,440 + MPMX19_05262 0.30 -0.3
797,440 + MPMX19_05262 0.30 -0.1
797,440 + MPMX19_05262 0.30 +0.0
797,440 + MPMX19_05262 0.30 -0.6
797,440 + MPMX19_05262 0.30 -1.2
797,440 + MPMX19_05262 0.30 -0.5
797,441 - MPMX19_05262 0.30 -1.1
797,441 - MPMX19_05262 0.30 +0.3
797,441 - MPMX19_05262 0.30 -0.8
797,441 - MPMX19_05262 0.30 +0.5
797,638 + MPMX19_05262 0.62 -2.1
797,638 + MPMX19_05262 0.62 -2.2
797,639 - MPMX19_05262 0.62 -0.2
797,639 - MPMX19_05262 0.62 -0.8
797,639 - MPMX19_05262 0.62 -1.2
797,776 + MPMX19_05262 0.83 -0.4
797,776 + MPMX19_05262 0.83 -0.1
797,776 + MPMX19_05262 0.83 -1.2
797,777 - MPMX19_05262 0.84 -0.4
797,777 - MPMX19_05262 0.84 +0.5
797,789 + MPMX19_05262 0.85 +0.2
797,789 + MPMX19_05262 0.85 +0.7
797,789 + MPMX19_05262 0.85 -0.2
797,790 - MPMX19_05262 0.86 -0.3
797,888 + -1.5
797,889 - +0.1
797,903 + +1.2
797,903 + -2.2
797,903 + -0.2
797,904 - +0.9
798,062 + MPMX19_05263 0.12 -0.7
798,063 - MPMX19_05263 0.12 -0.0
798,063 - MPMX19_05263 0.12 +2.1
798,063 - MPMX19_05263 0.12 -0.1
798,080 + MPMX19_05263 0.14 -0.2
798,080 + MPMX19_05263 0.14 -1.1
798,081 - MPMX19_05263 0.14 -0.6
798,081 - MPMX19_05263 0.14 +1.8
798,081 - MPMX19_05263 0.14 -0.5
798,174 - MPMX19_05263 0.20 +0.4
798,449 + MPMX19_05263 0.40 -0.1
798,450 - MPMX19_05263 0.40 +0.9
798,563 + MPMX19_05263 0.48 -2.2
798,564 - MPMX19_05263 0.48 -2.0
798,695 + MPMX19_05263 0.57 +0.4
798,776 + MPMX19_05263 0.63 -1.4
798,776 + MPMX19_05263 0.63 -1.8
798,776 + MPMX19_05263 0.63 -0.5
798,776 + MPMX19_05263 0.63 +0.7
798,777 - MPMX19_05263 0.63 -0.8
798,777 - MPMX19_05263 0.63 +0.5
798,857 + MPMX19_05263 0.68 -0.1
798,857 + MPMX19_05263 0.68 +0.7
798,857 + MPMX19_05263 0.68 +0.9
798,857 + MPMX19_05263 0.68 -1.2
798,857 + MPMX19_05263 0.68 +0.6
798,857 + MPMX19_05263 0.68 -1.0
798,857 + MPMX19_05263 0.68 +1.1
798,857 + MPMX19_05263 0.68 +1.5
798,858 - MPMX19_05263 0.68 -2.0
798,858 - MPMX19_05263 0.68 +1.0
798,858 - MPMX19_05263 0.68 -0.4
798,858 - MPMX19_05263 0.68 +0.0
798,858 - MPMX19_05263 0.68 +0.1
798,858 - MPMX19_05263 0.68 +0.7
798,858 - MPMX19_05263 0.68 +0.1
798,858 - MPMX19_05263 0.68 -0.2
798,858 - MPMX19_05263 0.68 +0.5
798,858 - MPMX19_05263 0.68 +0.0
798,887 + MPMX19_05263 0.70 -0.3
798,887 + MPMX19_05263 0.70 +0.6
798,887 + MPMX19_05263 0.70 -0.1
798,887 + MPMX19_05263 0.70 +0.7
798,887 + MPMX19_05263 0.70 -0.1
798,888 - MPMX19_05263 0.70 -0.6
798,888 - MPMX19_05263 0.70 +0.1
798,888 - MPMX19_05263 0.70 -0.7
798,888 - MPMX19_05263 0.70 -0.3
798,888 - MPMX19_05263 0.70 +0.1
799,315 - -1.1
799,330 + +0.2
799,330 + +0.6
799,330 + -0.6
799,330 + -0.1
799,330 + -0.3
799,330 + +0.4
799,382 + -2.4
799,382 + +0.8
799,383 - -0.5
799,478 + -0.1
799,478 + -0.5
799,479 - -0.5
799,647 + MPMX19_05264 0.22 -0.8
799,647 + MPMX19_05264 0.22 +0.2
799,647 + MPMX19_05264 0.22 -0.4
799,648 - MPMX19_05264 0.22 +0.8
799,648 - MPMX19_05264 0.22 +0.6
799,648 - MPMX19_05264 0.22 -0.4
799,648 - MPMX19_05264 0.22 -0.5
799,648 - MPMX19_05264 0.22 +0.5
799,648 - MPMX19_05264 0.22 -0.3
799,679 + MPMX19_05264 0.29 -1.3
799,679 + MPMX19_05264 0.29 +0.1
799,679 + MPMX19_05264 0.29 +1.3
799,680 - MPMX19_05264 0.29 +1.8
799,899 + MPMX19_05264 0.75 +1.1
799,899 + MPMX19_05264 0.75 -2.2
799,899 + MPMX19_05264 0.75 -1.5
799,899 + MPMX19_05264 0.75 -0.3
799,899 + MPMX19_05264 0.75 +0.1
799,899 + MPMX19_05264 0.75 -0.1
799,899 + MPMX19_05264 0.75 -0.7
799,899 + MPMX19_05264 0.75 -0.6
799,899 + MPMX19_05264 0.75 +0.1
799,900 - MPMX19_05264 0.76 -1.0
799,900 - MPMX19_05264 0.76 -1.1
799,900 - MPMX19_05264 0.76 -0.4
799,900 - MPMX19_05264 0.76 +0.9
799,900 - MPMX19_05264 0.76 -1.0
799,900 - MPMX19_05264 0.76 -0.0
799,900 - MPMX19_05264 0.76 -0.8
799,900 - MPMX19_05264 0.76 -0.3
799,900 - MPMX19_05264 0.76 +0.6
799,900 - MPMX19_05264 0.76 -0.8
800,055 + +0.8
800,190 + MPMX19_05265 0.24 +0.8
800,208 + MPMX19_05265 0.27 +0.0
800,208 + MPMX19_05265 0.27 +0.0
800,208 + MPMX19_05265 0.27 +0.5
800,208 + MPMX19_05265 0.27 +0.5
800,208 + MPMX19_05265 0.27 +2.3
800,208 + MPMX19_05265 0.27 +0.3
800,208 + MPMX19_05265 0.27 +0.7
800,208 + MPMX19_05265 0.27 -0.1
800,208 + MPMX19_05265 0.27 +0.3
800,209 - MPMX19_05265 0.27 +0.1
800,223 + MPMX19_05265 0.29 -0.9
800,223 + MPMX19_05265 0.29 +0.3
800,223 + MPMX19_05265 0.29 +1.2
800,223 + MPMX19_05265 0.29 +0.3
800,223 + MPMX19_05265 0.29 +0.2
800,223 + MPMX19_05265 0.29 -0.4
800,224 - MPMX19_05265 0.29 -0.4
800,224 - MPMX19_05265 0.29 -0.5
800,224 - MPMX19_05265 0.29 -0.5

Or see this region's nucleotide sequence