Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05240 and MPMX19_05241 are separated by 230 nucleotides MPMX19_05241 and MPMX19_05242 are separated by 33 nucleotides MPMX19_05242 and MPMX19_05243 are separated by 79 nucleotides
MPMX19_05240: MPMX19_05240 - L-threonine dehydratase catabolic TdcB, at 769,843 to 770,817
_05240
MPMX19_05241: MPMX19_05241 - hypothetical protein, at 771,048 to 771,704
_05241
MPMX19_05242: MPMX19_05242 - hypothetical protein, at 771,738 to 772,460
_05242
MPMX19_05243: MPMX19_05243 - hypothetical protein, at 772,540 to 773,538
_05243
Position (kb) 771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 770.190 kb on - strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.351 kb on - strand, within MPMX19_05240 at 770.351 kb on - strand, within MPMX19_05240 at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.839 kb on + strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.946 kb on + strand at 770.946 kb on + strand at 770.946 kb on + strand at 770.946 kb on + strand at 770.946 kb on + strand at 770.947 kb on - strand at 770.947 kb on - strand at 770.947 kb on - strand at 770.947 kb on - strand at 770.947 kb on - strand at 770.978 kb on + strand at 770.978 kb on + strand at 770.978 kb on + strand at 770.979 kb on - strand at 770.979 kb on - strand at 770.979 kb on - strand at 770.979 kb on - strand at 770.979 kb on - strand at 770.997 kb on + strand at 770.998 kb on - strand at 771.016 kb on - strand at 771.016 kb on - strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.099 kb on + strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.100 kb on - strand at 771.246 kb on + strand, within MPMX19_05241 at 771.246 kb on + strand, within MPMX19_05241 at 771.247 kb on - strand, within MPMX19_05241 at 771.423 kb on + strand, within MPMX19_05241 at 771.423 kb on + strand, within MPMX19_05241 at 771.423 kb on + strand, within MPMX19_05241 at 771.424 kb on - strand, within MPMX19_05241 at 771.424 kb on - strand, within MPMX19_05241 at 771.424 kb on - strand, within MPMX19_05241 at 771.522 kb on + strand, within MPMX19_05241 at 771.522 kb on + strand, within MPMX19_05241 at 771.523 kb on - strand, within MPMX19_05241 at 771.523 kb on - strand, within MPMX19_05241 at 771.523 kb on - strand, within MPMX19_05241 at 771.559 kb on + strand, within MPMX19_05241 at 771.584 kb on - strand, within MPMX19_05241 at 771.690 kb on + strand at 771.690 kb on + strand at 771.690 kb on + strand at 771.690 kb on + strand at 771.690 kb on + strand at 771.690 kb on + strand at 771.691 kb on - strand at 771.691 kb on - strand at 771.691 kb on - strand at 771.691 kb on - strand at 771.691 kb on - strand at 771.691 kb on - strand at 771.739 kb on + strand at 771.739 kb on + strand at 771.740 kb on - strand at 771.740 kb on - strand at 772.494 kb on + strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.495 kb on - strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.568 kb on + strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.569 kb on - strand at 772.577 kb on + strand at 772.578 kb on - strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.610 kb on + strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.611 kb on - strand at 772.634 kb on + strand at 772.634 kb on + strand at 772.634 kb on + strand at 772.634 kb on + strand at 772.634 kb on + strand at 772.634 kb on + strand at 772.635 kb on - strand at 772.635 kb on - strand at 772.635 kb on - strand at 772.635 kb on - strand at 772.635 kb on - strand at 772.655 kb on + strand, within MPMX19_05243 at 772.655 kb on + strand, within MPMX19_05243 at 772.655 kb on + strand, within MPMX19_05243 at 772.655 kb on + strand, within MPMX19_05243 at 772.655 kb on + strand, within MPMX19_05243 at 772.655 kb on + strand, within MPMX19_05243 at 772.655 kb on + strand, within MPMX19_05243 at 772.656 kb on - strand, within MPMX19_05243 at 772.656 kb on - strand, within MPMX19_05243 at 772.656 kb on - strand, within MPMX19_05243 at 772.656 kb on - strand, within MPMX19_05243 at 772.656 kb on - strand, within MPMX19_05243
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 770,190 - MPMX19_05240 0.36 -1.1 770,204 + MPMX19_05240 0.37 +2.0 770,204 + MPMX19_05240 0.37 +0.7 770,204 + MPMX19_05240 0.37 +0.2 770,204 + MPMX19_05240 0.37 -0.4 770,204 + MPMX19_05240 0.37 +0.1 770,204 + MPMX19_05240 0.37 -1.0 770,204 + MPMX19_05240 0.37 -0.6 770,204 + MPMX19_05240 0.37 -0.1 770,204 + MPMX19_05240 0.37 -1.7 770,204 + MPMX19_05240 0.37 -0.4 770,205 - MPMX19_05240 0.37 -0.2 770,205 - MPMX19_05240 0.37 -1.5 770,205 - MPMX19_05240 0.37 -0.7 770,205 - MPMX19_05240 0.37 -0.4 770,205 - MPMX19_05240 0.37 -0.5 770,205 - MPMX19_05240 0.37 -0.2 770,205 - MPMX19_05240 0.37 -0.9 770,205 - MPMX19_05240 0.37 +1.4 770,205 - MPMX19_05240 0.37 -0.8 770,205 - MPMX19_05240 0.37 -0.0 770,205 - MPMX19_05240 0.37 -0.7 770,205 - MPMX19_05240 0.37 -1.2 770,205 - MPMX19_05240 0.37 +0.6 770,205 - MPMX19_05240 0.37 -1.5 770,205 - MPMX19_05240 0.37 +0.5 770,229 + MPMX19_05240 0.40 -1.1 770,229 + MPMX19_05240 0.40 +1.3 770,229 + MPMX19_05240 0.40 -0.2 770,229 + MPMX19_05240 0.40 -0.2 770,230 - MPMX19_05240 0.40 -2.0 770,230 - MPMX19_05240 0.40 +0.3 770,230 - MPMX19_05240 0.40 -1.8 770,230 - MPMX19_05240 0.40 -0.7 770,230 - MPMX19_05240 0.40 +0.4 770,230 - MPMX19_05240 0.40 -0.4 770,230 - MPMX19_05240 0.40 -0.4 770,350 + MPMX19_05240 0.52 +0.4 770,350 + MPMX19_05240 0.52 +0.4 770,350 + MPMX19_05240 0.52 +0.6 770,350 + MPMX19_05240 0.52 -0.3 770,351 - MPMX19_05240 0.52 +0.7 770,351 - MPMX19_05240 0.52 +1.0 770,839 + -0.8 770,839 + -1.0 770,839 + -0.2 770,839 + -0.3 770,839 + +0.2 770,839 + -1.7 770,839 + -2.0 770,839 + +0.2 770,839 + +0.1 770,839 + -1.0 770,839 + -0.7 770,839 + -1.3 770,839 + +0.7 770,839 + +1.8 770,839 + -1.0 770,839 + -1.6 770,839 + +0.8 770,840 - -0.0 770,840 - -0.2 770,840 - -0.5 770,840 - +0.5 770,840 - +0.3 770,840 - +0.3 770,840 - +0.2 770,840 - -1.7 770,946 + +0.1 770,946 + -0.2 770,946 + +0.9 770,946 + +1.3 770,946 + +0.9 770,947 - +0.8 770,947 - -0.3 770,947 - -0.8 770,947 - -0.8 770,947 - +0.4 770,978 + -0.9 770,978 + -0.4 770,978 + +1.1 770,979 - -1.6 770,979 - -0.1 770,979 - -1.1 770,979 - -0.4 770,979 - -0.9 770,997 + -2.8 770,998 - -0.9 771,016 - -1.0 771,016 - -0.2 771,099 + +0.5 771,099 + -0.1 771,099 + -1.3 771,099 + -2.1 771,099 + -0.7 771,099 + +0.6 771,099 + -0.5 771,099 + -0.2 771,099 + -0.1 771,100 - +0.8 771,100 - -0.1 771,100 - +0.0 771,100 - +0.6 771,100 - -0.5 771,100 - +0.0 771,100 - +0.2 771,100 - +0.9 771,100 - +1.5 771,100 - -0.1 771,100 - -0.5 771,100 - +0.3 771,100 - -2.7 771,100 - +0.2 771,100 - -0.7 771,100 - -1.1 771,100 - -0.6 771,246 + MPMX19_05241 0.30 -0.7 771,246 + MPMX19_05241 0.30 -2.3 771,247 - MPMX19_05241 0.30 -1.0 771,423 + MPMX19_05241 0.57 -0.1 771,423 + MPMX19_05241 0.57 +1.4 771,423 + MPMX19_05241 0.57 -1.6 771,424 - MPMX19_05241 0.57 -2.0 771,424 - MPMX19_05241 0.57 -0.7 771,424 - MPMX19_05241 0.57 +1.2 771,522 + MPMX19_05241 0.72 +0.2 771,522 + MPMX19_05241 0.72 -0.5 771,523 - MPMX19_05241 0.72 -2.1 771,523 - MPMX19_05241 0.72 -0.6 771,523 - MPMX19_05241 0.72 +0.5 771,559 + MPMX19_05241 0.78 -2.2 771,584 - MPMX19_05241 0.82 -2.2 771,690 + +0.5 771,690 + -0.3 771,690 + -0.7 771,690 + -0.9 771,690 + -0.5 771,690 + -0.0 771,691 - -1.0 771,691 - -0.7 771,691 - -1.0 771,691 - +0.3 771,691 - +0.1 771,691 - +0.2 771,739 + +1.3 771,739 + +0.0 771,740 - +0.4 771,740 - +0.3 772,494 + +0.3 772,495 - +1.1 772,495 - -0.1 772,495 - +1.2 772,495 - +1.1 772,495 - -1.8 772,495 - -0.4 772,495 - -0.7 772,495 - -1.2 772,495 - -0.5 772,495 - -1.1 772,495 - -1.1 772,495 - -2.7 772,495 - -1.4 772,495 - -1.2 772,495 - +0.2 772,495 - -1.7 772,495 - +0.3 772,495 - -1.5 772,495 - +0.4 772,495 - -0.9 772,568 + -0.5 772,568 + -0.5 772,568 + +1.2 772,568 + +0.6 772,568 + +0.1 772,568 + +0.2 772,568 + -0.8 772,568 + +0.7 772,568 + -0.6 772,568 + -0.8 772,568 + +2.2 772,568 + +0.5 772,568 + +0.6 772,568 + -0.4 772,568 + -1.1 772,568 + +0.8 772,568 + +1.5 772,568 + +1.1 772,568 + +0.3 772,568 + -1.0 772,568 + +0.2 772,568 + -1.4 772,568 + -1.5 772,568 + -1.1 772,568 + +0.5 772,568 + +0.5 772,568 + -0.5 772,568 + +0.0 772,568 + -1.0 772,568 + +0.3 772,568 + -0.5 772,568 + -0.1 772,568 + -1.3 772,568 + -0.5 772,568 + -0.3 772,568 + +0.5 772,568 + -0.0 772,569 - +0.1 772,569 - -2.2 772,569 - -1.4 772,569 - -2.1 772,569 - +0.3 772,569 - +0.3 772,569 - +1.1 772,569 - -2.6 772,569 - +0.0 772,569 - +0.5 772,569 - -0.9 772,569 - -0.5 772,569 - -0.1 772,569 - -0.5 772,569 - +0.2 772,569 - -0.4 772,569 - +0.2 772,569 - -0.5 772,569 - +0.1 772,569 - +0.3 772,569 - -1.2 772,569 - +0.7 772,569 - -0.4 772,569 - -0.8 772,569 - -0.7 772,569 - -0.5 772,569 - +0.1 772,569 - +0.2 772,569 - -1.2 772,569 - -0.7 772,569 - -0.5 772,569 - -0.2 772,569 - -0.1 772,569 - -0.3 772,569 - -0.1 772,569 - -0.4 772,577 + -0.5 772,578 - +0.5 772,610 + -0.8 772,610 + +0.5 772,610 + -0.7 772,610 + -0.2 772,610 + -1.2 772,610 + -0.1 772,610 + -1.5 772,610 + -2.8 772,610 + +1.6 772,610 + -0.1 772,610 + +1.5 772,610 + +0.2 772,610 + +0.6 772,610 + -0.5 772,611 - -0.7 772,611 - -1.5 772,611 - -1.3 772,611 - -0.5 772,611 - -0.7 772,611 - -0.7 772,611 - -3.0 772,611 - +0.2 772,611 - +0.5 772,611 - -0.6 772,611 - -0.8 772,611 - -0.6 772,634 + +0.3 772,634 + +1.5 772,634 + +0.2 772,634 + +0.3 772,634 + -0.8 772,634 + -1.8 772,635 - +1.5 772,635 - +0.0 772,635 - -0.3 772,635 - -1.1 772,635 - -2.0 772,655 + MPMX19_05243 0.12 -0.9 772,655 + MPMX19_05243 0.12 +0.8 772,655 + MPMX19_05243 0.12 -0.3 772,655 + MPMX19_05243 0.12 -1.1 772,655 + MPMX19_05243 0.12 -0.5 772,655 + MPMX19_05243 0.12 -0.1 772,655 + MPMX19_05243 0.12 +0.3 772,656 - MPMX19_05243 0.12 -0.6 772,656 - MPMX19_05243 0.12 -0.1 772,656 - MPMX19_05243 0.12 -2.1 772,656 - MPMX19_05243 0.12 +0.2 772,656 - MPMX19_05243 0.12 -0.2
Or see this region's nucleotide sequence