Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05228

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05226 and MPMX19_05227 are separated by 56 nucleotidesMPMX19_05227 and MPMX19_05228 overlap by 4 nucleotidesMPMX19_05228 and MPMX19_05229 overlap by 4 nucleotidesMPMX19_05229 and MPMX19_05230 are separated by 103 nucleotides MPMX19_05226: MPMX19_05226 - Oxidoreductase UcpA, at 753,233 to 754,018 _05226 MPMX19_05227: MPMX19_05227 - hypothetical protein, at 754,075 to 754,356 _05227 MPMX19_05228: MPMX19_05228 - Anti-sigma-E factor ChrR, at 754,353 to 755,039 _05228 MPMX19_05229: MPMX19_05229 - ECF RNA polymerase sigma factor RpoE, at 755,036 to 755,659 _05229 MPMX19_05230: MPMX19_05230 - putative MFS-type transporter YcaD, at 755,763 to 757,001 _05230 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 753.587 kb on + strand, within MPMX19_05226at 753.587 kb on + strand, within MPMX19_05226at 753.587 kb on + strand, within MPMX19_05226at 753.587 kb on + strand, within MPMX19_05226at 753.588 kb on - strand, within MPMX19_05226at 753.588 kb on - strand, within MPMX19_05226at 753.588 kb on - strand, within MPMX19_05226at 753.588 kb on - strand, within MPMX19_05226at 753.588 kb on - strand, within MPMX19_05226at 753.701 kb on + strand, within MPMX19_05226at 753.701 kb on + strand, within MPMX19_05226at 753.702 kb on - strand, within MPMX19_05226at 753.702 kb on - strand, within MPMX19_05226at 753.823 kb on + strand, within MPMX19_05226at 753.823 kb on + strand, within MPMX19_05226at 753.824 kb on - strand, within MPMX19_05226at 753.824 kb on - strand, within MPMX19_05226at 753.824 kb on - strand, within MPMX19_05226at 753.838 kb on + strand, within MPMX19_05226at 753.839 kb on - strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.877 kb on + strand, within MPMX19_05226at 753.878 kb on - strand, within MPMX19_05226at 753.878 kb on - strand, within MPMX19_05226at 753.878 kb on - strand, within MPMX19_05226at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.159 kb on + strand, within MPMX19_05227at 754.160 kb on - strand, within MPMX19_05227at 754.160 kb on - strand, within MPMX19_05227at 754.160 kb on - strand, within MPMX19_05227at 754.315 kb on + strand, within MPMX19_05227at 754.315 kb on + strand, within MPMX19_05227at 754.315 kb on + strand, within MPMX19_05227at 754.315 kb on + strand, within MPMX19_05227at 754.315 kb on + strand, within MPMX19_05227at 754.315 kb on + strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.316 kb on - strand, within MPMX19_05227at 754.336 kb on + strandat 754.336 kb on + strandat 754.336 kb on + strandat 754.336 kb on + strandat 754.337 kb on - strandat 754.444 kb on + strand, within MPMX19_05228at 754.444 kb on + strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.445 kb on - strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.465 kb on + strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.466 kb on - strand, within MPMX19_05228at 754.489 kb on + strand, within MPMX19_05228at 754.489 kb on + strand, within MPMX19_05228at 754.490 kb on - strand, within MPMX19_05228at 754.498 kb on + strand, within MPMX19_05228at 754.498 kb on + strand, within MPMX19_05228at 754.498 kb on + strand, within MPMX19_05228at 754.499 kb on - strand, within MPMX19_05228at 754.499 kb on - strand, within MPMX19_05228at 754.499 kb on - strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.903 kb on + strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.904 kb on - strand, within MPMX19_05228at 754.936 kb on + strand, within MPMX19_05228at 754.936 kb on + strand, within MPMX19_05228at 754.936 kb on + strand, within MPMX19_05228at 754.937 kb on - strand, within MPMX19_05228at 755.095 kb on + strandat 755.157 kb on + strand, within MPMX19_05229at 755.158 kb on - strand, within MPMX19_05229at 755.158 kb on - strand, within MPMX19_05229at 755.158 kb on - strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.478 kb on + strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.479 kb on - strand, within MPMX19_05229at 755.696 kb on - strandat 755.710 kb on - strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.738 kb on + strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.739 kb on - strandat 755.764 kb on + strandat 755.765 kb on - strandat 755.765 kb on - strandat 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.890 kb on + strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230at 755.891 kb on - strand, within MPMX19_05230

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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753,587 + MPMX19_05226 0.45 +0.9
753,587 + MPMX19_05226 0.45 -0.2
753,587 + MPMX19_05226 0.45 -0.8
753,587 + MPMX19_05226 0.45 +0.3
753,588 - MPMX19_05226 0.45 +0.1
753,588 - MPMX19_05226 0.45 -1.7
753,588 - MPMX19_05226 0.45 +0.7
753,588 - MPMX19_05226 0.45 -2.3
753,588 - MPMX19_05226 0.45 +0.6
753,701 + MPMX19_05226 0.60 -0.1
753,701 + MPMX19_05226 0.60 +1.1
753,702 - MPMX19_05226 0.60 -0.1
753,702 - MPMX19_05226 0.60 +0.5
753,823 + MPMX19_05226 0.75 -1.2
753,823 + MPMX19_05226 0.75 -1.1
753,824 - MPMX19_05226 0.75 -1.7
753,824 - MPMX19_05226 0.75 +0.8
753,824 - MPMX19_05226 0.75 -1.8
753,838 + MPMX19_05226 0.77 +0.1
753,839 - MPMX19_05226 0.77 +0.5
753,877 + MPMX19_05226 0.82 -1.0
753,877 + MPMX19_05226 0.82 +1.1
753,877 + MPMX19_05226 0.82 -0.1
753,877 + MPMX19_05226 0.82 -0.5
753,877 + MPMX19_05226 0.82 +0.2
753,877 + MPMX19_05226 0.82 -0.4
753,877 + MPMX19_05226 0.82 -0.4
753,877 + MPMX19_05226 0.82 -0.8
753,878 - MPMX19_05226 0.82 +0.0
753,878 - MPMX19_05226 0.82 -0.5
753,878 - MPMX19_05226 0.82 +0.2
754,159 + MPMX19_05227 0.30 -0.9
754,159 + MPMX19_05227 0.30 +0.2
754,159 + MPMX19_05227 0.30 -0.1
754,159 + MPMX19_05227 0.30 -1.3
754,159 + MPMX19_05227 0.30 -0.3
754,159 + MPMX19_05227 0.30 -0.5
754,159 + MPMX19_05227 0.30 -0.7
754,159 + MPMX19_05227 0.30 -0.6
754,159 + MPMX19_05227 0.30 -1.1
754,159 + MPMX19_05227 0.30 +0.1
754,159 + MPMX19_05227 0.30 +0.5
754,159 + MPMX19_05227 0.30 -0.6
754,160 - MPMX19_05227 0.30 +0.1
754,160 - MPMX19_05227 0.30 +1.5
754,160 - MPMX19_05227 0.30 -0.3
754,315 + MPMX19_05227 0.85 -1.4
754,315 + MPMX19_05227 0.85 -0.8
754,315 + MPMX19_05227 0.85 +0.3
754,315 + MPMX19_05227 0.85 +0.5
754,315 + MPMX19_05227 0.85 +0.3
754,315 + MPMX19_05227 0.85 -0.0
754,316 - MPMX19_05227 0.85 -0.2
754,316 - MPMX19_05227 0.85 -0.8
754,316 - MPMX19_05227 0.85 +1.2
754,316 - MPMX19_05227 0.85 +1.8
754,316 - MPMX19_05227 0.85 -0.4
754,316 - MPMX19_05227 0.85 -0.1
754,316 - MPMX19_05227 0.85 -0.5
754,316 - MPMX19_05227 0.85 -0.4
754,336 + +0.2
754,336 + -0.9
754,336 + -0.1
754,336 + -0.8
754,337 - -0.8
754,444 + MPMX19_05228 0.13 +0.5
754,444 + MPMX19_05228 0.13 -0.8
754,445 - MPMX19_05228 0.13 -0.1
754,445 - MPMX19_05228 0.13 -0.3
754,445 - MPMX19_05228 0.13 +0.3
754,445 - MPMX19_05228 0.13 +0.2
754,445 - MPMX19_05228 0.13 -0.3
754,445 - MPMX19_05228 0.13 -0.4
754,445 - MPMX19_05228 0.13 -0.1
754,465 + MPMX19_05228 0.16 -1.6
754,465 + MPMX19_05228 0.16 +1.2
754,465 + MPMX19_05228 0.16 +0.5
754,465 + MPMX19_05228 0.16 +1.2
754,465 + MPMX19_05228 0.16 -0.3
754,465 + MPMX19_05228 0.16 +0.7
754,465 + MPMX19_05228 0.16 +1.0
754,465 + MPMX19_05228 0.16 -1.0
754,465 + MPMX19_05228 0.16 -0.4
754,465 + MPMX19_05228 0.16 -1.6
754,466 - MPMX19_05228 0.16 -0.4
754,466 - MPMX19_05228 0.16 -0.3
754,466 - MPMX19_05228 0.16 +0.1
754,466 - MPMX19_05228 0.16 +0.0
754,466 - MPMX19_05228 0.16 -0.5
754,466 - MPMX19_05228 0.16 -1.3
754,466 - MPMX19_05228 0.16 -1.6
754,466 - MPMX19_05228 0.16 -0.0
754,466 - MPMX19_05228 0.16 +0.3
754,466 - MPMX19_05228 0.16 -0.1
754,466 - MPMX19_05228 0.16 +1.5
754,489 + MPMX19_05228 0.20 -0.1
754,489 + MPMX19_05228 0.20 -1.3
754,490 - MPMX19_05228 0.20 +0.7
754,498 + MPMX19_05228 0.21 -0.0
754,498 + MPMX19_05228 0.21 +0.7
754,498 + MPMX19_05228 0.21 -2.0
754,499 - MPMX19_05228 0.21 -0.1
754,499 - MPMX19_05228 0.21 -0.3
754,499 - MPMX19_05228 0.21 -0.8
754,903 + MPMX19_05228 0.80 -1.3
754,903 + MPMX19_05228 0.80 +0.5
754,903 + MPMX19_05228 0.80 -1.1
754,903 + MPMX19_05228 0.80 +2.2
754,903 + MPMX19_05228 0.80 -1.8
754,903 + MPMX19_05228 0.80 -0.4
754,904 - MPMX19_05228 0.80 +0.5
754,904 - MPMX19_05228 0.80 +0.5
754,904 - MPMX19_05228 0.80 -1.0
754,904 - MPMX19_05228 0.80 -0.5
754,904 - MPMX19_05228 0.80 -0.1
754,936 + MPMX19_05228 0.85 -0.4
754,936 + MPMX19_05228 0.85 +0.4
754,936 + MPMX19_05228 0.85 -0.1
754,937 - MPMX19_05228 0.85 -0.4
755,095 + -2.2
755,157 + MPMX19_05229 0.19 -0.5
755,158 - MPMX19_05229 0.20 +0.2
755,158 - MPMX19_05229 0.20 +1.2
755,158 - MPMX19_05229 0.20 +0.2
755,478 + MPMX19_05229 0.71 -0.4
755,478 + MPMX19_05229 0.71 -0.2
755,478 + MPMX19_05229 0.71 +1.1
755,478 + MPMX19_05229 0.71 +0.4
755,478 + MPMX19_05229 0.71 -1.0
755,479 - MPMX19_05229 0.71 -0.1
755,479 - MPMX19_05229 0.71 -1.1
755,479 - MPMX19_05229 0.71 +0.8
755,479 - MPMX19_05229 0.71 +0.0
755,479 - MPMX19_05229 0.71 +1.0
755,479 - MPMX19_05229 0.71 +0.2
755,479 - MPMX19_05229 0.71 +1.5
755,479 - MPMX19_05229 0.71 +0.2
755,479 - MPMX19_05229 0.71 -0.0
755,479 - MPMX19_05229 0.71 -0.6
755,479 - MPMX19_05229 0.71 +0.6
755,696 - +0.6
755,710 - -0.3
755,738 + -0.1
755,738 + -1.2
755,738 + -1.7
755,738 + -0.3
755,738 + -1.4
755,738 + +0.6
755,738 + +0.4
755,739 - +0.6
755,739 - -0.2
755,739 - -2.1
755,739 - +0.6
755,739 - +0.9
755,764 + -0.4
755,765 - -0.6
755,765 - +0.1
755,890 + MPMX19_05230 0.10 +0.5
755,890 + MPMX19_05230 0.10 -1.4
755,890 + MPMX19_05230 0.10 -1.0
755,890 + MPMX19_05230 0.10 -0.1
755,890 + MPMX19_05230 0.10 +0.3
755,891 - MPMX19_05230 0.10 +0.1
755,891 - MPMX19_05230 0.10 +1.1
755,891 - MPMX19_05230 0.10 -1.0
755,891 - MPMX19_05230 0.10 -1.6
755,891 - MPMX19_05230 0.10 -1.3

Or see this region's nucleotide sequence