Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05161 and MPMX19_05162 are separated by 550 nucleotides MPMX19_05162 and MPMX19_05163 are separated by 339 nucleotides
MPMX19_05161: MPMX19_05161 - hypothetical protein, at 661,395 to 661,529
_05161
MPMX19_05162: MPMX19_05162 - Ferrous-iron efflux pump FieF, at 662,080 to 663,501
_05162
MPMX19_05163: MPMX19_05163 - hypothetical protein, at 663,841 to 664,932
_05163
Position (kb) 662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2 at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.158 kb on - strand at 661.158 kb on - strand at 661.158 kb on - strand at 661.278 kb on - strand at 661.278 kb on - strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.396 kb on + strand at 661.548 kb on + strand at 661.666 kb on + strand at 661.666 kb on + strand at 661.667 kb on - strand at 661.667 kb on - strand at 661.701 kb on + strand at 661.703 kb on + strand at 661.708 kb on + strand at 661.710 kb on + strand at 661.710 kb on + strand at 661.769 kb on + strand at 661.824 kb on + strand at 661.825 kb on - strand at 661.928 kb on + strand at 661.928 kb on + strand at 661.928 kb on + strand at 661.936 kb on + strand at 661.937 kb on - strand at 661.937 kb on - strand at 661.937 kb on - strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.284 kb on + strand, within MPMX19_05162 at 662.285 kb on - strand, within MPMX19_05162 at 662.285 kb on - strand, within MPMX19_05162 at 662.285 kb on - strand, within MPMX19_05162 at 662.362 kb on + strand, within MPMX19_05162 at 662.363 kb on - strand, within MPMX19_05162 at 662.458 kb on + strand, within MPMX19_05162 at 662.459 kb on - strand, within MPMX19_05162 at 662.459 kb on - strand, within MPMX19_05162 at 662.574 kb on - strand, within MPMX19_05162 at 662.740 kb on - strand, within MPMX19_05162 at 663.706 kb on + strand at 663.707 kb on - strand at 663.775 kb on + strand at 663.776 kb on - strand at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 661,153 + -2.1 661,153 + +0.1 661,153 + -0.3 661,153 + -0.1 661,153 + -0.2 661,153 + +1.2 661,153 + -0.4 661,153 + -0.1 661,153 + +1.0 661,153 + -0.4 661,153 + +0.6 661,153 + -0.1 661,153 + -0.7 661,153 + -1.1 661,153 + +0.3 661,153 + -0.7 661,153 + -0.5 661,153 + -0.8 661,153 + -0.5 661,153 + -1.1 661,153 + +0.1 661,153 + +0.7 661,153 + +0.2 661,153 + -0.5 661,153 + -2.1 661,153 + +0.1 661,154 - -0.5 661,154 - -0.4 661,154 - +1.5 661,154 - -0.1 661,154 - -0.1 661,154 - -0.9 661,154 - -0.5 661,154 - -0.4 661,154 - +0.2 661,157 + +0.5 661,157 + -1.9 661,157 + +0.2 661,157 + -0.3 661,158 - -0.3 661,158 - -1.1 661,158 - +0.9 661,278 - +0.1 661,278 - -1.1 661,321 + +0.2 661,321 + -1.4 661,321 + +0.6 661,321 + -0.1 661,321 + -0.3 661,321 + -0.1 661,321 + -0.7 661,321 + -2.1 661,321 + -1.5 661,321 + -0.1 661,321 + -0.2 661,322 - -0.8 661,322 - -0.1 661,322 - +0.5 661,322 - -0.8 661,322 - +0.2 661,322 - -1.1 661,322 - +0.3 661,322 - -0.5 661,322 - -0.1 661,322 - -1.6 661,322 - +0.1 661,322 - +2.0 661,322 - -0.6 661,322 - -0.1 661,322 - -0.4 661,322 - +0.5 661,396 + +0.7 661,548 + +0.4 661,666 + +1.8 661,666 + -1.1 661,667 - -0.0 661,667 - +0.7 661,701 + -0.5 661,703 + -0.6 661,708 + -0.1 661,710 + -0.6 661,710 + +0.9 661,769 + +0.6 661,824 + +0.6 661,825 - +0.7 661,928 + +1.0 661,928 + -1.7 661,928 + -0.9 661,936 + -1.6 661,937 - +0.1 661,937 - +0.7 661,937 - -0.1 662,050 + -0.4 662,050 + -0.3 662,050 + -1.1 662,050 + -1.5 662,051 - +1.0 662,051 - +0.4 662,051 - -1.0 662,051 - -0.8 662,051 - +0.6 662,051 - -0.7 662,051 - +0.2 662,284 + MPMX19_05162 0.14 -2.7 662,285 - MPMX19_05162 0.14 +0.3 662,285 - MPMX19_05162 0.14 -1.3 662,285 - MPMX19_05162 0.14 -0.8 662,362 + MPMX19_05162 0.20 -1.5 662,363 - MPMX19_05162 0.20 +0.3 662,458 + MPMX19_05162 0.27 -0.7 662,459 - MPMX19_05162 0.27 -1.3 662,459 - MPMX19_05162 0.27 -1.3 662,574 - MPMX19_05162 0.35 -2.1 662,740 - MPMX19_05162 0.46 -0.5 663,706 + -0.4 663,707 - -0.7 663,775 + +0.9 663,776 - -0.7 664,054 + MPMX19_05163 0.20 +1.2 664,054 + MPMX19_05163 0.20 -2.0 664,054 + MPMX19_05163 0.20 -1.2 664,054 + MPMX19_05163 0.20 +1.2 664,054 + MPMX19_05163 0.20 -2.6 664,054 + MPMX19_05163 0.20 +0.4 664,054 + MPMX19_05163 0.20 +0.3 664,054 + MPMX19_05163 0.20 -0.1 664,055 - MPMX19_05163 0.20 -0.4 664,055 - MPMX19_05163 0.20 -1.1 664,055 - MPMX19_05163 0.20 -0.1 664,055 - MPMX19_05163 0.20 +0.3 664,055 - MPMX19_05163 0.20 -0.8 664,055 - MPMX19_05163 0.20 -1.4 664,055 - MPMX19_05163 0.20 +0.9 664,055 - MPMX19_05163 0.20 -0.1 664,055 - MPMX19_05163 0.20 +0.5 664,055 - MPMX19_05163 0.20 +0.1 664,055 - MPMX19_05163 0.20 -1.2 664,055 - MPMX19_05163 0.20 -0.8 664,055 - MPMX19_05163 0.20 +0.0 664,055 - MPMX19_05163 0.20 -2.0 664,465 + MPMX19_05163 0.57 -1.4 664,465 + MPMX19_05163 0.57 -0.8 664,465 + MPMX19_05163 0.57 +0.3 664,465 + MPMX19_05163 0.57 -0.4 664,465 + MPMX19_05163 0.57 +0.0 664,465 + MPMX19_05163 0.57 +0.7 664,465 + MPMX19_05163 0.57 -1.8 664,465 + MPMX19_05163 0.57 -2.0 664,465 + MPMX19_05163 0.57 -0.9 664,466 - MPMX19_05163 0.57 +0.4 664,466 - MPMX19_05163 0.57 +1.0 664,466 - MPMX19_05163 0.57 +0.3 664,466 - MPMX19_05163 0.57 -1.8 664,466 - MPMX19_05163 0.57 -0.5 664,466 - MPMX19_05163 0.57 -0.8 664,466 - MPMX19_05163 0.57 -1.7 664,466 - MPMX19_05163 0.57 +0.5 664,467 + MPMX19_05163 0.57 -0.2 664,467 + MPMX19_05163 0.57 +0.4 664,467 + MPMX19_05163 0.57 +0.2 664,467 + MPMX19_05163 0.57 +0.4 664,467 + MPMX19_05163 0.57 -0.3 664,468 - MPMX19_05163 0.57 +1.2 664,468 - MPMX19_05163 0.57 -0.6 664,468 - MPMX19_05163 0.57 +0.3 664,468 - MPMX19_05163 0.57 +1.3 664,468 - MPMX19_05163 0.57 +0.6
Or see this region's nucleotide sequence