Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05154

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05153 and MPMX19_05154 are separated by 84 nucleotidesMPMX19_05154 and MPMX19_05155 are separated by 240 nucleotides MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483 _05153 MPMX19_05154: MPMX19_05154 - Isoleucine 2-epimerase, at 651,568 to 652,875 _05154 MPMX19_05155: MPMX19_05155 - hypothetical protein, at 653,116 to 654,681 _05155 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2at 650.935 kb on + strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.229 kb on + strand, within MPMX19_05153at 651.229 kb on + strand, within MPMX19_05153at 651.229 kb on + strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 651.230 kb on - strand, within MPMX19_05153at 652.114 kb on + strand, within MPMX19_05154at 652.114 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.738 kb on + strand, within MPMX19_05154at 652.739 kb on - strand, within MPMX19_05154at 652.945 kb on + strandat 652.945 kb on + strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.394 kb on + strand, within MPMX19_05155at 653.394 kb on + strand, within MPMX19_05155at 653.395 kb on - strand, within MPMX19_05155at 653.395 kb on - strand, within MPMX19_05155at 653.395 kb on - strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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650,935 + MPMX19_05153 0.55 +0.2
650,936 - MPMX19_05153 0.55 -1.1
650,936 - MPMX19_05153 0.55 -1.1
650,936 - MPMX19_05153 0.55 -0.9
651,010 + MPMX19_05153 0.61 +0.9
651,010 + MPMX19_05153 0.61 -0.9
651,010 + MPMX19_05153 0.61 -1.0
651,010 + MPMX19_05153 0.61 -0.5
651,208 + MPMX19_05153 0.78 +0.2
651,208 + MPMX19_05153 0.78 +0.3
651,208 + MPMX19_05153 0.78 -0.1
651,208 + MPMX19_05153 0.78 -0.3
651,208 + MPMX19_05153 0.78 -0.7
651,208 + MPMX19_05153 0.78 +0.2
651,208 + MPMX19_05153 0.78 -0.3
651,208 + MPMX19_05153 0.78 -0.6
651,208 + MPMX19_05153 0.78 +1.4
651,208 + MPMX19_05153 0.78 -0.8
651,209 - MPMX19_05153 0.78 +0.1
651,209 - MPMX19_05153 0.78 -0.3
651,209 - MPMX19_05153 0.78 +0.7
651,209 - MPMX19_05153 0.78 -0.3
651,209 - MPMX19_05153 0.78 +0.5
651,209 - MPMX19_05153 0.78 -0.3
651,209 - MPMX19_05153 0.78 -0.4
651,209 - MPMX19_05153 0.78 -0.1
651,209 - MPMX19_05153 0.78 -0.7
651,209 - MPMX19_05153 0.78 +0.4
651,209 - MPMX19_05153 0.78 -0.2
651,209 - MPMX19_05153 0.78 +0.0
651,229 + MPMX19_05153 0.79 -0.4
651,229 + MPMX19_05153 0.79 -0.1
651,229 + MPMX19_05153 0.79 -0.3
651,230 - MPMX19_05153 0.79 +1.0
651,230 - MPMX19_05153 0.79 -0.2
651,230 - MPMX19_05153 0.79 -0.7
651,230 - MPMX19_05153 0.79 -1.5
651,230 - MPMX19_05153 0.79 +0.6
651,230 - MPMX19_05153 0.79 +0.6
652,114 + MPMX19_05154 0.42 +0.6
652,114 + MPMX19_05154 0.42 +0.5
652,189 + MPMX19_05154 0.47 -1.8
652,189 + MPMX19_05154 0.47 -0.5
652,189 + MPMX19_05154 0.47 +0.4
652,189 + MPMX19_05154 0.47 +2.2
652,189 + MPMX19_05154 0.47 -0.7
652,189 + MPMX19_05154 0.47 -0.3
652,189 + MPMX19_05154 0.47 -0.7
652,189 + MPMX19_05154 0.47 -0.2
652,190 - MPMX19_05154 0.48 -0.9
652,190 - MPMX19_05154 0.48 +0.6
652,190 - MPMX19_05154 0.48 +0.1
652,190 - MPMX19_05154 0.48 +0.1
652,190 - MPMX19_05154 0.48 -1.7
652,190 - MPMX19_05154 0.48 +0.9
652,190 - MPMX19_05154 0.48 +0.3
652,190 - MPMX19_05154 0.48 -0.5
652,252 + MPMX19_05154 0.52 +0.3
652,252 + MPMX19_05154 0.52 -0.1
652,252 + MPMX19_05154 0.52 -1.5
652,252 + MPMX19_05154 0.52 +0.0
652,252 + MPMX19_05154 0.52 -0.7
652,252 + MPMX19_05154 0.52 +0.3
652,252 + MPMX19_05154 0.52 +0.7
652,252 + MPMX19_05154 0.52 +1.2
652,252 + MPMX19_05154 0.52 +1.5
652,252 + MPMX19_05154 0.52 +0.5
652,252 + MPMX19_05154 0.52 -0.7
652,253 - MPMX19_05154 0.52 -0.7
652,253 - MPMX19_05154 0.52 +0.6
652,253 - MPMX19_05154 0.52 -1.4
652,253 - MPMX19_05154 0.52 +0.6
652,253 - MPMX19_05154 0.52 +0.2
652,253 - MPMX19_05154 0.52 -0.1
652,253 - MPMX19_05154 0.52 -0.5
652,498 + MPMX19_05154 0.71 -0.2
652,498 + MPMX19_05154 0.71 +1.1
652,498 + MPMX19_05154 0.71 +0.5
652,498 + MPMX19_05154 0.71 -0.4
652,498 + MPMX19_05154 0.71 -0.3
652,498 + MPMX19_05154 0.71 -1.3
652,499 - MPMX19_05154 0.71 +0.5
652,499 - MPMX19_05154 0.71 +0.7
652,499 - MPMX19_05154 0.71 +1.8
652,499 - MPMX19_05154 0.71 +1.5
652,499 - MPMX19_05154 0.71 -0.3
652,499 - MPMX19_05154 0.71 -0.1
652,499 - MPMX19_05154 0.71 -0.3
652,738 + MPMX19_05154 0.89 -1.1
652,739 - MPMX19_05154 0.90 +0.9
652,945 + -0.3
652,945 + -0.3
652,946 - -1.5
652,946 - +0.4
652,946 - -0.2
652,946 - +0.9
652,946 - +0.2
652,946 - -1.7
652,946 - -1.1
652,946 - -0.6
652,946 - -0.7
653,037 + +1.5
653,037 + +0.3
653,037 + -0.5
653,037 + +0.3
653,037 + +1.2
653,037 + -0.1
653,037 + +1.2
653,037 + -1.4
653,038 - +0.3
653,038 - -0.3
653,038 - -1.5
653,038 - +0.3
653,038 - -0.1
653,038 - -0.2
653,038 - -0.5
653,038 - +1.5
653,038 - -1.0
653,038 - -2.4
653,038 - -1.3
653,038 - -0.7
653,038 - +0.4
653,038 - +0.2
653,038 - +1.7
653,038 - -0.5
653,394 + MPMX19_05155 0.18 -0.3
653,394 + MPMX19_05155 0.18 -0.9
653,395 - MPMX19_05155 0.18 -0.3
653,395 - MPMX19_05155 0.18 +0.1
653,395 - MPMX19_05155 0.18 +0.0
653,805 + MPMX19_05155 0.44 +0.2
653,805 + MPMX19_05155 0.44 -1.1
653,805 + MPMX19_05155 0.44 -0.3
653,805 + MPMX19_05155 0.44 -0.5
653,805 + MPMX19_05155 0.44 -0.2
653,805 + MPMX19_05155 0.44 +0.2
653,805 + MPMX19_05155 0.44 +0.1
653,805 + MPMX19_05155 0.44 -0.7
653,805 + MPMX19_05155 0.44 -0.5
653,805 + MPMX19_05155 0.44 -0.5
653,805 + MPMX19_05155 0.44 -0.7
653,805 + MPMX19_05155 0.44 -2.1
653,805 + MPMX19_05155 0.44 +0.3
653,806 - MPMX19_05155 0.44 +1.1
653,806 - MPMX19_05155 0.44 -0.1
653,806 - MPMX19_05155 0.44 +0.3
653,806 - MPMX19_05155 0.44 +0.6
653,806 - MPMX19_05155 0.44 +0.9
653,806 - MPMX19_05155 0.44 -0.0
653,806 - MPMX19_05155 0.44 -1.1
653,806 - MPMX19_05155 0.44 -1.8
653,806 - MPMX19_05155 0.44 -0.1
653,806 - MPMX19_05155 0.44 -0.1
653,806 - MPMX19_05155 0.44 -0.7

Or see this region's nucleotide sequence