Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05130

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05127 and MPMX19_05128 are separated by 158 nucleotidesMPMX19_05128 and MPMX19_05129 overlap by 4 nucleotidesMPMX19_05129 and MPMX19_05130 are separated by 45 nucleotidesMPMX19_05130 and MPMX19_05131 are separated by 121 nucleotides MPMX19_05127: MPMX19_05127 - hypothetical protein, at 615,252 to 616,976 _05127 MPMX19_05128: MPMX19_05128 - hypothetical protein, at 617,135 to 617,311 _05128 MPMX19_05129: MPMX19_05129 - hypothetical protein, at 617,308 to 617,472 _05129 MPMX19_05130: MPMX19_05130 - hypothetical protein, at 617,518 to 618,300 _05130 MPMX19_05131: MPMX19_05131 - hypothetical protein, at 618,422 to 618,982 _05131 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2 3at 616.612 kb on + strand, within MPMX19_05127at 616.612 kb on + strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.667 kb on - strand, within MPMX19_05127at 616.922 kb on + strandat 616.922 kb on + strandat 616.922 kb on + strandat 616.923 kb on - strandat 616.923 kb on - strandat 616.923 kb on - strandat 617.029 kb on - strandat 617.029 kb on - strandat 617.081 kb on - strandat 617.354 kb on + strand, within MPMX19_05129at 617.355 kb on - strand, within MPMX19_05129at 617.355 kb on - strand, within MPMX19_05129at 617.355 kb on - strand, within MPMX19_05129at 617.612 kb on + strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.842 kb on + strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 618.122 kb on + strand, within MPMX19_05130at 618.123 kb on - strand, within MPMX19_05130at 618.123 kb on - strand, within MPMX19_05130at 618.123 kb on - strand, within MPMX19_05130at 618.123 kb on - strand, within MPMX19_05130at 618.123 kb on - strand, within MPMX19_05130at 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.244 kb on - strandat 618.244 kb on - strandat 618.244 kb on - strandat 618.244 kb on - strandat 618.300 kb on + strandat 618.300 kb on + strandat 618.300 kb on + strandat 618.301 kb on - strandat 618.301 kb on - strandat 618.301 kb on - strandat 618.644 kb on + strand, within MPMX19_05131at 618.644 kb on + strand, within MPMX19_05131at 618.645 kb on - strand, within MPMX19_05131at 618.645 kb on - strand, within MPMX19_05131at 618.645 kb on - strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.672 kb on + strand, within MPMX19_05131at 618.673 kb on - strand, within MPMX19_05131at 618.673 kb on - strand, within MPMX19_05131at 618.673 kb on - strand, within MPMX19_05131at 618.673 kb on - strand, within MPMX19_05131at 618.673 kb on - strand, within MPMX19_05131at 618.673 kb on - strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.804 kb on + strand, within MPMX19_05131at 618.805 kb on - strand, within MPMX19_05131at 618.805 kb on - strand, within MPMX19_05131at 618.805 kb on - strand, within MPMX19_05131at 618.805 kb on - strand, within MPMX19_05131at 618.805 kb on - strand, within MPMX19_05131at 618.805 kb on - strand, within MPMX19_05131at 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.978 kb on + strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 618.979 kb on - strandat 619.153 kb on + strandat 619.190 kb on + strandat 619.191 kb on - strandat 619.264 kb on + strandat 619.264 kb on + strandat 619.265 kb on - strandat 619.265 kb on - strandat 619.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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616,612 + MPMX19_05127 0.79 -0.5
616,612 + MPMX19_05127 0.79 -0.0
616,613 - MPMX19_05127 0.79 +0.1
616,613 - MPMX19_05127 0.79 +0.7
616,613 - MPMX19_05127 0.79 +0.3
616,613 - MPMX19_05127 0.79 -2.1
616,667 - MPMX19_05127 0.82 +2.3
616,922 + -0.1
616,922 + -1.3
616,922 + +3.5
616,923 - -0.4
616,923 - -0.5
616,923 - -0.1
617,029 - +0.5
617,029 - -0.8
617,081 - +1.0
617,354 + MPMX19_05129 0.28 +0.5
617,355 - MPMX19_05129 0.28 -0.8
617,355 - MPMX19_05129 0.28 +0.4
617,355 - MPMX19_05129 0.28 -0.7
617,612 + MPMX19_05130 0.12 -0.4
617,613 - MPMX19_05130 0.12 +0.3
617,613 - MPMX19_05130 0.12 -1.2
617,613 - MPMX19_05130 0.12 -0.3
617,613 - MPMX19_05130 0.12 -0.4
617,720 + MPMX19_05130 0.26 -0.5
617,720 + MPMX19_05130 0.26 -0.2
617,720 + MPMX19_05130 0.26 +0.5
617,720 + MPMX19_05130 0.26 +0.8
617,720 + MPMX19_05130 0.26 -0.5
617,720 + MPMX19_05130 0.26 +0.5
617,720 + MPMX19_05130 0.26 +0.2
617,721 - MPMX19_05130 0.26 +0.5
617,721 - MPMX19_05130 0.26 -0.1
617,721 - MPMX19_05130 0.26 +0.3
617,721 - MPMX19_05130 0.26 -0.2
617,721 - MPMX19_05130 0.26 -0.6
617,721 - MPMX19_05130 0.26 +0.8
617,721 - MPMX19_05130 0.26 -0.3
617,842 + MPMX19_05130 0.41 +1.1
617,843 - MPMX19_05130 0.42 +1.3
617,843 - MPMX19_05130 0.42 -0.2
617,843 - MPMX19_05130 0.42 -0.5
617,843 - MPMX19_05130 0.42 -1.5
618,122 + MPMX19_05130 0.77 +0.8
618,123 - MPMX19_05130 0.77 -1.8
618,123 - MPMX19_05130 0.77 +0.9
618,123 - MPMX19_05130 0.77 +0.7
618,123 - MPMX19_05130 0.77 +3.1
618,123 - MPMX19_05130 0.77 -0.7
618,243 + -0.3
618,243 + -0.4
618,243 + -1.7
618,243 + -0.1
618,243 + +0.0
618,243 + -0.8
618,244 - +0.5
618,244 - -1.6
618,244 - -0.5
618,244 - +0.4
618,300 + -0.6
618,300 + -0.3
618,300 + -0.9
618,301 - -0.3
618,301 - +0.7
618,301 - +0.5
618,644 + MPMX19_05131 0.40 -1.5
618,644 + MPMX19_05131 0.40 -1.3
618,645 - MPMX19_05131 0.40 +1.1
618,645 - MPMX19_05131 0.40 -0.6
618,645 - MPMX19_05131 0.40 +0.1
618,672 + MPMX19_05131 0.45 +0.1
618,672 + MPMX19_05131 0.45 -0.7
618,672 + MPMX19_05131 0.45 -0.5
618,672 + MPMX19_05131 0.45 -0.6
618,672 + MPMX19_05131 0.45 -0.1
618,672 + MPMX19_05131 0.45 -1.0
618,672 + MPMX19_05131 0.45 -0.7
618,672 + MPMX19_05131 0.45 -0.4
618,673 - MPMX19_05131 0.45 -0.1
618,673 - MPMX19_05131 0.45 -2.0
618,673 - MPMX19_05131 0.45 -1.1
618,673 - MPMX19_05131 0.45 +0.5
618,673 - MPMX19_05131 0.45 -0.4
618,673 - MPMX19_05131 0.45 -1.2
618,804 + MPMX19_05131 0.68 -1.6
618,804 + MPMX19_05131 0.68 +0.7
618,804 + MPMX19_05131 0.68 -0.7
618,804 + MPMX19_05131 0.68 +0.1
618,804 + MPMX19_05131 0.68 -0.2
618,804 + MPMX19_05131 0.68 -1.3
618,804 + MPMX19_05131 0.68 -0.2
618,804 + MPMX19_05131 0.68 +0.0
618,804 + MPMX19_05131 0.68 -0.8
618,804 + MPMX19_05131 0.68 -1.2
618,804 + MPMX19_05131 0.68 +0.1
618,804 + MPMX19_05131 0.68 -0.6
618,805 - MPMX19_05131 0.68 -0.8
618,805 - MPMX19_05131 0.68 -0.1
618,805 - MPMX19_05131 0.68 +0.7
618,805 - MPMX19_05131 0.68 -1.4
618,805 - MPMX19_05131 0.68 -0.3
618,805 - MPMX19_05131 0.68 +1.0
618,978 + -1.5
618,978 + +1.3
618,978 + +0.1
618,978 + -1.8
618,978 + -0.0
618,978 + +0.7
618,978 + -0.5
618,978 + -0.5
618,978 + -1.5
618,978 + -1.7
618,978 + -1.1
618,978 + -1.1
618,978 + -0.1
618,978 + +0.5
618,978 + -0.2
618,978 + +0.5
618,978 + -1.1
618,978 + +1.3
618,978 + -0.6
618,979 - +0.2
618,979 - -0.7
618,979 - -1.3
618,979 - +0.3
618,979 - -0.7
618,979 - -1.0
618,979 - +0.1
618,979 - -0.6
618,979 - -0.3
618,979 - -0.4
618,979 - -1.3
618,979 - -0.0
618,979 - -1.5
619,153 + +0.5
619,190 + +0.3
619,191 - -0.6
619,264 + -1.7
619,264 + -1.0
619,265 - -1.1
619,265 - +0.0
619,265 - -0.3

Or see this region's nucleotide sequence