Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05081 and MPMX19_05082 are separated by 66 nucleotides MPMX19_05082 and MPMX19_05083 are separated by 85 nucleotides MPMX19_05083 and MPMX19_05084 overlap by 1 nucleotides MPMX19_05084 and MPMX19_05085 are separated by 22 nucleotides
MPMX19_05081: MPMX19_05081 - Sensor histidine kinase RcsC, at 570,409 to 572,814
_05081
MPMX19_05082: MPMX19_05082 - hypothetical protein, at 572,881 to 573,255
_05082
MPMX19_05083: MPMX19_05083 - hypothetical protein, at 573,341 to 573,610
_05083
MPMX19_05084: MPMX19_05084 - hypothetical protein, at 573,610 to 573,885
_05084
MPMX19_05085: MPMX19_05085 - hypothetical protein, at 573,908 to 574,333
_05085
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.079 kb on + strand, within MPMX19_05081 at 572.079 kb on + strand, within MPMX19_05081 at 572.079 kb on + strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.279 kb on - strand, within MPMX19_05081 at 572.279 kb on - strand, within MPMX19_05081 at 572.279 kb on - strand, within MPMX19_05081 at 572.434 kb on + strand, within MPMX19_05081 at 572.605 kb on + strand at 572.606 kb on - strand at 572.728 kb on + strand at 572.860 kb on + strand at 572.860 kb on + strand at 572.860 kb on + strand at 572.861 kb on - strand at 572.861 kb on - strand at 572.904 kb on + strand at 572.904 kb on + strand at 573.154 kb on + strand, within MPMX19_05082 at 573.154 kb on + strand, within MPMX19_05082 at 573.154 kb on + strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.286 kb on + strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.365 kb on + strand at 573.366 kb on - strand at 573.366 kb on - strand at 573.366 kb on - strand at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.584 kb on + strand at 573.584 kb on + strand at 573.658 kb on + strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.720 kb on + strand, within MPMX19_05084 at 573.720 kb on + strand, within MPMX19_05084 at 573.721 kb on - strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.890 kb on + strand at 573.891 kb on - strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 574.020 kb on + strand, within MPMX19_05085 at 574.020 kb on + strand, within MPMX19_05085 at 574.021 kb on - strand, within MPMX19_05085 at 574.047 kb on + strand, within MPMX19_05085 at 574.048 kb on - strand, within MPMX19_05085 at 574.048 kb on - strand, within MPMX19_05085 at 574.059 kb on + strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.072 kb on - strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.075 kb on - strand, within MPMX19_05085 at 574.075 kb on - strand, within MPMX19_05085 at 574.089 kb on + strand, within MPMX19_05085 at 574.090 kb on - strand, within MPMX19_05085
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 572,077 + MPMX19_05081 0.69 -0.0 572,077 + MPMX19_05081 0.69 +1.1 572,077 + MPMX19_05081 0.69 +0.2 572,077 + MPMX19_05081 0.69 -0.0 572,077 + MPMX19_05081 0.69 -0.3 572,077 + MPMX19_05081 0.69 -0.5 572,077 + MPMX19_05081 0.69 +0.7 572,077 + MPMX19_05081 0.69 +0.9 572,077 + MPMX19_05081 0.69 -0.5 572,077 + MPMX19_05081 0.69 -1.2 572,077 + MPMX19_05081 0.69 -0.6 572,077 + MPMX19_05081 0.69 -1.3 572,077 + MPMX19_05081 0.69 -1.7 572,077 + MPMX19_05081 0.69 -0.5 572,077 + MPMX19_05081 0.69 -0.1 572,078 - MPMX19_05081 0.69 -0.3 572,078 - MPMX19_05081 0.69 -0.8 572,078 - MPMX19_05081 0.69 +0.2 572,078 - MPMX19_05081 0.69 -0.1 572,078 - MPMX19_05081 0.69 -1.4 572,078 - MPMX19_05081 0.69 -1.1 572,078 - MPMX19_05081 0.69 -0.9 572,078 - MPMX19_05081 0.69 +0.2 572,078 - MPMX19_05081 0.69 -1.2 572,078 - MPMX19_05081 0.69 -0.4 572,078 - MPMX19_05081 0.69 -0.7 572,078 - MPMX19_05081 0.69 -0.5 572,078 - MPMX19_05081 0.69 -1.1 572,078 - MPMX19_05081 0.69 -1.1 572,079 + MPMX19_05081 0.69 -0.7 572,079 + MPMX19_05081 0.69 -1.5 572,079 + MPMX19_05081 0.69 +0.1 572,080 - MPMX19_05081 0.69 +0.5 572,080 - MPMX19_05081 0.69 -1.5 572,080 - MPMX19_05081 0.69 -0.7 572,080 - MPMX19_05081 0.69 -1.1 572,278 + MPMX19_05081 0.78 +0.4 572,278 + MPMX19_05081 0.78 -0.2 572,278 + MPMX19_05081 0.78 -1.0 572,278 + MPMX19_05081 0.78 -1.2 572,278 + MPMX19_05081 0.78 +0.0 572,278 + MPMX19_05081 0.78 -0.6 572,279 - MPMX19_05081 0.78 -1.0 572,279 - MPMX19_05081 0.78 +0.0 572,279 - MPMX19_05081 0.78 -0.1 572,434 + MPMX19_05081 0.84 +0.3 572,605 + -1.3 572,606 - -0.3 572,728 + -2.8 572,860 + -1.4 572,860 + +1.4 572,860 + -0.8 572,861 - -1.3 572,861 - -0.6 572,904 + +0.1 572,904 + +0.9 573,154 + MPMX19_05082 0.73 -0.1 573,154 + MPMX19_05082 0.73 +0.5 573,154 + MPMX19_05082 0.73 -1.5 573,155 - MPMX19_05082 0.73 +0.3 573,155 - MPMX19_05082 0.73 +0.1 573,155 - MPMX19_05082 0.73 -0.3 573,155 - MPMX19_05082 0.73 +0.3 573,286 + -1.0 573,287 - -1.7 573,287 - +0.5 573,287 - -1.1 573,287 - -1.2 573,365 + +0.4 573,366 - -1.3 573,366 - -0.1 573,366 - -0.4 573,419 + MPMX19_05083 0.29 -0.7 573,419 + MPMX19_05083 0.29 +0.4 573,419 + MPMX19_05083 0.29 +0.9 573,419 + MPMX19_05083 0.29 +1.5 573,419 + MPMX19_05083 0.29 -0.1 573,419 + MPMX19_05083 0.29 +1.1 573,419 + MPMX19_05083 0.29 -1.3 573,419 + MPMX19_05083 0.29 +0.7 573,419 + MPMX19_05083 0.29 -0.3 573,419 + MPMX19_05083 0.29 +0.9 573,420 - MPMX19_05083 0.29 -1.3 573,420 - MPMX19_05083 0.29 +0.5 573,420 - MPMX19_05083 0.29 -0.2 573,420 - MPMX19_05083 0.29 -1.8 573,420 - MPMX19_05083 0.29 -2.0 573,420 - MPMX19_05083 0.29 -0.7 573,420 - MPMX19_05083 0.29 -0.4 573,584 + -2.3 573,584 + +0.3 573,658 + MPMX19_05084 0.17 -0.2 573,659 - MPMX19_05084 0.18 -0.3 573,659 - MPMX19_05084 0.18 +0.2 573,659 - MPMX19_05084 0.18 +1.9 573,720 + MPMX19_05084 0.40 -0.8 573,720 + MPMX19_05084 0.40 -2.7 573,721 - MPMX19_05084 0.40 -0.1 573,808 + MPMX19_05084 0.72 +0.6 573,808 + MPMX19_05084 0.72 +0.2 573,808 + MPMX19_05084 0.72 -0.6 573,808 + MPMX19_05084 0.72 -2.2 573,808 + MPMX19_05084 0.72 -0.2 573,808 + MPMX19_05084 0.72 -2.7 573,808 + MPMX19_05084 0.72 -1.2 573,808 + MPMX19_05084 0.72 +0.5 573,808 + MPMX19_05084 0.72 -0.9 573,808 + MPMX19_05084 0.72 -0.4 573,809 - MPMX19_05084 0.72 +0.9 573,809 - MPMX19_05084 0.72 -0.5 573,809 - MPMX19_05084 0.72 -1.7 573,809 - MPMX19_05084 0.72 -0.8 573,809 - MPMX19_05084 0.72 -2.6 573,809 - MPMX19_05084 0.72 -0.4 573,809 - MPMX19_05084 0.72 +0.9 573,809 - MPMX19_05084 0.72 -0.1 573,809 - MPMX19_05084 0.72 +0.2 573,809 - MPMX19_05084 0.72 -0.5 573,809 - MPMX19_05084 0.72 +0.5 573,809 - MPMX19_05084 0.72 -2.0 573,890 + -0.8 573,891 - +0.7 573,909 + -0.2 573,909 + -0.1 573,909 + -1.9 573,909 + +0.1 573,909 + -0.6 573,909 + -0.2 573,909 + +1.5 573,909 + +0.2 573,910 - +1.8 573,910 - -0.4 573,910 - -0.8 573,910 - -0.5 573,910 - +0.4 574,020 + MPMX19_05085 0.26 -1.0 574,020 + MPMX19_05085 0.26 -1.3 574,021 - MPMX19_05085 0.27 -1.4 574,047 + MPMX19_05085 0.33 +0.1 574,048 - MPMX19_05085 0.33 -1.4 574,048 - MPMX19_05085 0.33 +1.1 574,059 + MPMX19_05085 0.35 -0.6 574,060 - MPMX19_05085 0.36 +1.0 574,060 - MPMX19_05085 0.36 +0.7 574,060 - MPMX19_05085 0.36 -0.5 574,072 - MPMX19_05085 0.38 -2.3 574,074 + MPMX19_05085 0.39 +0.4 574,074 + MPMX19_05085 0.39 -0.8 574,074 + MPMX19_05085 0.39 -0.7 574,074 + MPMX19_05085 0.39 -1.9 574,074 + MPMX19_05085 0.39 +0.8 574,075 - MPMX19_05085 0.39 +0.9 574,075 - MPMX19_05085 0.39 -1.3 574,089 + MPMX19_05085 0.42 -1.0 574,090 - MPMX19_05085 0.43 -0.7
Or see this region's nucleotide sequence