Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05054 and MPMX19_05055 are separated by 498 nucleotides MPMX19_05055 and MPMX19_05056 are separated by 154 nucleotides MPMX19_05056 and MPMX19_05057 are separated by 122 nucleotides
MPMX19_05054: MPMX19_05054 - UDP-N-acetylglucosamine 4-epimerase, at 539,444 to 540,388
_05054
MPMX19_05055: MPMX19_05055 - Phosphoserine aminotransferase, at 540,887 to 542,074
_05055
MPMX19_05056: MPMX19_05056 - hypothetical protein, at 542,229 to 542,696
_05056
MPMX19_05057: MPMX19_05057 - hypothetical protein, at 542,819 to 543,184
_05057
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.946 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.006 kb on + strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.007 kb on - strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.027 kb on + strand, within MPMX19_05054 at 540.028 kb on - strand, within MPMX19_05054 at 540.028 kb on - strand, within MPMX19_05054 at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.378 kb on + strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.379 kb on - strand at 540.504 kb on + strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.138 kb on - strand at 542.181 kb on + strand at 542.181 kb on + strand at 542.230 kb on + strand at 542.231 kb on - strand at 542.231 kb on - strand at 542.231 kb on - strand at 542.260 kb on + strand at 542.260 kb on + strand at 542.261 kb on - strand at 542.261 kb on - strand at 542.261 kb on - strand at 542.366 kb on - strand, within MPMX19_05056 at 542.476 kb on + strand, within MPMX19_05056 at 542.476 kb on - strand, within MPMX19_05056 at 542.477 kb on - strand, within MPMX19_05056 at 542.511 kb on - strand, within MPMX19_05056 at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.684 kb on + strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.685 kb on - strand at 542.738 kb on - strand at 542.756 kb on + strand at 542.756 kb on + strand at 542.756 kb on + strand at 542.756 kb on + strand at 542.756 kb on + strand at 542.756 kb on + strand at 542.756 kb on + strand at 542.757 kb on - strand at 542.757 kb on - strand at 542.757 kb on - strand at 542.757 kb on - strand at 542.757 kb on - strand at 542.871 kb on + strand, within MPMX19_05057 at 542.872 kb on - strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.892 kb on + strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.893 kb on - strand, within MPMX19_05057 at 542.923 kb on - strand, within MPMX19_05057 at 542.923 kb on - strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.943 kb on + strand, within MPMX19_05057 at 542.944 kb on - strand, within MPMX19_05057 at 542.944 kb on - strand, within MPMX19_05057 at 542.944 kb on - strand, within MPMX19_05057 at 542.944 kb on - strand, within MPMX19_05057 at 542.944 kb on - strand, within MPMX19_05057 at 542.944 kb on - strand, within MPMX19_05057 at 542.964 kb on + strand, within MPMX19_05057 at 542.964 kb on + strand, within MPMX19_05057 at 542.964 kb on + strand, within MPMX19_05057 at 542.965 kb on - strand, within MPMX19_05057 at 542.965 kb on - strand, within MPMX19_05057 at 542.965 kb on - strand, within MPMX19_05057 at 542.965 kb on - strand, within MPMX19_05057 at 542.965 kb on - strand, within MPMX19_05057 at 542.965 kb on - strand, within MPMX19_05057 at 542.967 kb on + strand, within MPMX19_05057 at 542.968 kb on - strand, within MPMX19_05057 at 542.968 kb on - strand, within MPMX19_05057
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 539,946 + MPMX19_05054 0.53 -1.5 540,006 + MPMX19_05054 0.59 -0.1 540,006 + MPMX19_05054 0.59 -1.7 540,006 + MPMX19_05054 0.59 +0.6 540,006 + MPMX19_05054 0.59 +0.1 540,006 + MPMX19_05054 0.59 +0.5 540,006 + MPMX19_05054 0.59 -1.7 540,006 + MPMX19_05054 0.59 +0.9 540,006 + MPMX19_05054 0.59 -1.1 540,006 + MPMX19_05054 0.59 +0.0 540,006 + MPMX19_05054 0.59 +0.7 540,006 + MPMX19_05054 0.59 -1.3 540,007 - MPMX19_05054 0.60 +0.1 540,007 - MPMX19_05054 0.60 +0.3 540,007 - MPMX19_05054 0.60 +0.1 540,007 - MPMX19_05054 0.60 -1.1 540,007 - MPMX19_05054 0.60 +0.4 540,007 - MPMX19_05054 0.60 -0.8 540,007 - MPMX19_05054 0.60 -0.7 540,007 - MPMX19_05054 0.60 -0.7 540,027 + MPMX19_05054 0.62 -0.2 540,027 + MPMX19_05054 0.62 +0.2 540,027 + MPMX19_05054 0.62 -0.7 540,027 + MPMX19_05054 0.62 -0.0 540,027 + MPMX19_05054 0.62 -0.8 540,027 + MPMX19_05054 0.62 +0.8 540,027 + MPMX19_05054 0.62 -0.4 540,027 + MPMX19_05054 0.62 -0.1 540,028 - MPMX19_05054 0.62 +0.0 540,028 - MPMX19_05054 0.62 -1.8 540,378 + -1.7 540,378 + -0.5 540,378 + -0.1 540,378 + +0.4 540,378 + +0.5 540,378 + +1.3 540,378 + +0.5 540,378 + +0.3 540,378 + -0.5 540,378 + -0.3 540,378 + +0.9 540,378 + -0.1 540,378 + +1.5 540,378 + -0.5 540,378 + +0.0 540,378 + -2.0 540,378 + +0.8 540,378 + -1.2 540,379 - -0.1 540,379 - -0.4 540,379 - -0.8 540,379 - -0.1 540,379 - +1.5 540,379 - +0.2 540,379 - +0.1 540,379 - +0.3 540,379 - -0.8 540,379 - +0.5 540,504 + -0.9 542,138 - +0.7 542,138 - -1.3 542,138 - -2.2 542,138 - +0.3 542,138 - +1.5 542,138 - +0.1 542,138 - +0.3 542,181 + -0.3 542,181 + +0.2 542,230 + -0.2 542,231 - -0.6 542,231 - -0.8 542,231 - -0.5 542,260 + -1.7 542,260 + +0.2 542,261 - -2.1 542,261 - -0.5 542,261 - +0.8 542,366 - MPMX19_05056 0.29 +1.4 542,476 + MPMX19_05056 0.53 +0.2 542,476 - MPMX19_05056 0.53 -0.8 542,477 - MPMX19_05056 0.53 -0.5 542,511 - MPMX19_05056 0.60 +0.4 542,684 + -1.4 542,684 + -0.7 542,684 + -1.7 542,684 + -0.1 542,684 + +0.9 542,684 + +0.2 542,684 + -0.9 542,684 + -0.6 542,684 + -1.7 542,685 - +1.5 542,685 - +0.8 542,685 - -0.9 542,685 - -1.0 542,685 - +1.2 542,685 - +0.4 542,685 - -0.6 542,685 - +0.4 542,685 - +0.6 542,685 - +0.4 542,685 - +0.6 542,685 - -2.3 542,685 - +0.3 542,685 - +0.7 542,738 - -0.5 542,756 + -0.2 542,756 + -0.3 542,756 + +0.9 542,756 + -0.3 542,756 + -0.5 542,756 + +0.3 542,756 + -0.2 542,757 - +0.4 542,757 - -0.2 542,757 - -0.3 542,757 - +1.8 542,757 - -0.5 542,871 + MPMX19_05057 0.14 -0.3 542,872 - MPMX19_05057 0.14 -2.2 542,892 + MPMX19_05057 0.20 -0.3 542,892 + MPMX19_05057 0.20 -0.9 542,892 + MPMX19_05057 0.20 -0.3 542,892 + MPMX19_05057 0.20 -0.6 542,892 + MPMX19_05057 0.20 -2.1 542,892 + MPMX19_05057 0.20 -0.2 542,892 + MPMX19_05057 0.20 -0.9 542,892 + MPMX19_05057 0.20 -0.3 542,892 + MPMX19_05057 0.20 -0.9 542,892 + MPMX19_05057 0.20 +1.7 542,892 + MPMX19_05057 0.20 +0.1 542,892 + MPMX19_05057 0.20 -0.4 542,892 + MPMX19_05057 0.20 -1.9 542,892 + MPMX19_05057 0.20 -0.4 542,892 + MPMX19_05057 0.20 -0.2 542,892 + MPMX19_05057 0.20 +0.3 542,892 + MPMX19_05057 0.20 -0.3 542,892 + MPMX19_05057 0.20 +0.3 542,893 - MPMX19_05057 0.20 -0.5 542,893 - MPMX19_05057 0.20 -0.1 542,893 - MPMX19_05057 0.20 +0.7 542,893 - MPMX19_05057 0.20 +0.3 542,893 - MPMX19_05057 0.20 -0.1 542,893 - MPMX19_05057 0.20 +0.6 542,893 - MPMX19_05057 0.20 -0.5 542,893 - MPMX19_05057 0.20 -0.8 542,893 - MPMX19_05057 0.20 +0.1 542,893 - MPMX19_05057 0.20 -0.3 542,893 - MPMX19_05057 0.20 -0.8 542,893 - MPMX19_05057 0.20 +1.1 542,893 - MPMX19_05057 0.20 +0.2 542,893 - MPMX19_05057 0.20 -1.1 542,893 - MPMX19_05057 0.20 -1.7 542,893 - MPMX19_05057 0.20 -1.1 542,923 - MPMX19_05057 0.28 +0.5 542,923 - MPMX19_05057 0.28 +0.9 542,943 + MPMX19_05057 0.34 -1.0 542,943 + MPMX19_05057 0.34 +0.5 542,943 + MPMX19_05057 0.34 -0.5 542,943 + MPMX19_05057 0.34 -1.3 542,943 + MPMX19_05057 0.34 -0.9 542,943 + MPMX19_05057 0.34 -1.3 542,943 + MPMX19_05057 0.34 -1.1 542,943 + MPMX19_05057 0.34 -0.5 542,943 + MPMX19_05057 0.34 -1.9 542,943 + MPMX19_05057 0.34 -0.2 542,943 + MPMX19_05057 0.34 -1.5 542,944 - MPMX19_05057 0.34 -1.2 542,944 - MPMX19_05057 0.34 -0.7 542,944 - MPMX19_05057 0.34 -0.2 542,944 - MPMX19_05057 0.34 +0.3 542,944 - MPMX19_05057 0.34 -1.3 542,944 - MPMX19_05057 0.34 -0.4 542,964 + MPMX19_05057 0.40 -0.4 542,964 + MPMX19_05057 0.40 -0.9 542,964 + MPMX19_05057 0.40 +0.0 542,965 - MPMX19_05057 0.40 +0.1 542,965 - MPMX19_05057 0.40 -0.5 542,965 - MPMX19_05057 0.40 -0.8 542,965 - MPMX19_05057 0.40 -1.1 542,965 - MPMX19_05057 0.40 -0.2 542,965 - MPMX19_05057 0.40 -0.6 542,967 + MPMX19_05057 0.40 -0.8 542,968 - MPMX19_05057 0.41 -0.6 542,968 - MPMX19_05057 0.41 +0.7
Or see this region's nucleotide sequence