Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05053

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05052 and MPMX19_05053 are separated by 94 nucleotidesMPMX19_05053 and MPMX19_05054 are separated by 189 nucleotides MPMX19_05052: MPMX19_05052 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 536,998 to 538,386 _05052 MPMX19_05053: MPMX19_05053 - hypothetical protein, at 538,481 to 539,254 _05053 MPMX19_05054: MPMX19_05054 - UDP-N-acetylglucosamine 4-epimerase, at 539,444 to 540,388 _05054 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.857 kb on + strand, within MPMX19_05052at 537.858 kb on - strand, within MPMX19_05052at 537.858 kb on - strand, within MPMX19_05052at 537.858 kb on - strand, within MPMX19_05052at 537.968 kb on + strand, within MPMX19_05052at 537.968 kb on + strand, within MPMX19_05052at 537.969 kb on - strand, within MPMX19_05052at 537.969 kb on - strand, within MPMX19_05052at 537.969 kb on - strand, within MPMX19_05052at 537.969 kb on - strand, within MPMX19_05052at 537.969 kb on - strand, within MPMX19_05052at 537.969 kb on - strand, within MPMX19_05052at 538.094 kb on + strand, within MPMX19_05052at 538.094 kb on + strand, within MPMX19_05052at 538.094 kb on + strand, within MPMX19_05052at 538.094 kb on + strand, within MPMX19_05052at 538.094 kb on + strand, within MPMX19_05052at 538.094 kb on + strand, within MPMX19_05052at 538.095 kb on - strand, within MPMX19_05052at 538.095 kb on - strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.109 kb on + strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.110 kb on - strand, within MPMX19_05052at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.599 kb on + strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.600 kb on - strand, within MPMX19_05053at 538.720 kb on - strand, within MPMX19_05053at 538.749 kb on + strand, within MPMX19_05053at 538.749 kb on + strand, within MPMX19_05053at 538.750 kb on - strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.764 kb on + strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.765 kb on - strand, within MPMX19_05053at 538.818 kb on + strand, within MPMX19_05053at 538.818 kb on + strand, within MPMX19_05053at 538.818 kb on + strand, within MPMX19_05053at 538.818 kb on + strand, within MPMX19_05053at 538.819 kb on - strand, within MPMX19_05053at 538.819 kb on - strand, within MPMX19_05053at 538.833 kb on + strand, within MPMX19_05053at 538.833 kb on + strand, within MPMX19_05053at 538.834 kb on - strand, within MPMX19_05053at 538.834 kb on - strand, within MPMX19_05053at 538.834 kb on - strand, within MPMX19_05053at 538.834 kb on - strand, within MPMX19_05053at 538.980 kb on + strand, within MPMX19_05053at 538.981 kb on - strand, within MPMX19_05053at 538.981 kb on - strand, within MPMX19_05053at 539.040 kb on + strand, within MPMX19_05053at 539.040 kb on + strand, within MPMX19_05053at 539.040 kb on + strand, within MPMX19_05053at 539.041 kb on - strand, within MPMX19_05053at 539.041 kb on - strand, within MPMX19_05053at 539.306 kb on + strandat 539.306 kb on + strandat 539.306 kb on + strandat 539.306 kb on + strandat 539.306 kb on + strandat 539.306 kb on + strandat 539.307 kb on - strandat 539.307 kb on - strandat 539.309 kb on - strandat 539.309 kb on - strandat 539.309 kb on - strandat 539.322 kb on + strandat 539.322 kb on + strandat 539.322 kb on + strandat 539.322 kb on + strandat 539.323 kb on - strandat 539.328 kb on + strandat 539.328 kb on + strandat 539.328 kb on + strandat 539.329 kb on - strandat 539.342 kb on + strandat 539.342 kb on + strandat 539.343 kb on - strandat 539.343 kb on - strandat 539.343 kb on - strandat 539.343 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.345 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.351 kb on - strandat 539.393 kb on + strandat 539.422 kb on + strandat 539.423 kb on - strandat 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.664 kb on + strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.665 kb on - strand, within MPMX19_05054at 539.823 kb on + strand, within MPMX19_05054at 539.824 kb on - strand, within MPMX19_05054at 539.853 kb on + strand, within MPMX19_05054at 539.853 kb on + strand, within MPMX19_05054at 539.853 kb on + strand, within MPMX19_05054at 539.853 kb on + strand, within MPMX19_05054at 539.853 kb on + strand, within MPMX19_05054at 539.853 kb on + strand, within MPMX19_05054at 539.854 kb on - strand, within MPMX19_05054at 539.854 kb on - strand, within MPMX19_05054at 539.946 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.006 kb on + strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.007 kb on - strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.027 kb on + strand, within MPMX19_05054at 540.028 kb on - strand, within MPMX19_05054at 540.028 kb on - strand, within MPMX19_05054

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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537,857 + MPMX19_05052 0.62 -0.3
537,857 + MPMX19_05052 0.62 +1.3
537,857 + MPMX19_05052 0.62 -0.6
537,857 + MPMX19_05052 0.62 +0.6
537,857 + MPMX19_05052 0.62 +0.1
537,857 + MPMX19_05052 0.62 +0.9
537,857 + MPMX19_05052 0.62 -2.2
537,857 + MPMX19_05052 0.62 +0.6
537,857 + MPMX19_05052 0.62 +1.2
537,858 - MPMX19_05052 0.62 -0.2
537,858 - MPMX19_05052 0.62 -1.3
537,858 - MPMX19_05052 0.62 -0.2
537,968 + MPMX19_05052 0.70 -0.8
537,968 + MPMX19_05052 0.70 +0.5
537,969 - MPMX19_05052 0.70 +0.8
537,969 - MPMX19_05052 0.70 -0.6
537,969 - MPMX19_05052 0.70 -0.5
537,969 - MPMX19_05052 0.70 -1.8
537,969 - MPMX19_05052 0.70 +0.2
537,969 - MPMX19_05052 0.70 +0.3
538,094 + MPMX19_05052 0.79 +0.5
538,094 + MPMX19_05052 0.79 -0.1
538,094 + MPMX19_05052 0.79 +0.7
538,094 + MPMX19_05052 0.79 -0.2
538,094 + MPMX19_05052 0.79 -0.6
538,094 + MPMX19_05052 0.79 +0.1
538,095 - MPMX19_05052 0.79 -1.5
538,095 - MPMX19_05052 0.79 -1.8
538,109 + MPMX19_05052 0.80 -0.2
538,109 + MPMX19_05052 0.80 -0.8
538,109 + MPMX19_05052 0.80 -0.3
538,109 + MPMX19_05052 0.80 -1.3
538,109 + MPMX19_05052 0.80 +0.7
538,109 + MPMX19_05052 0.80 -0.2
538,109 + MPMX19_05052 0.80 +0.4
538,110 - MPMX19_05052 0.80 +2.0
538,110 - MPMX19_05052 0.80 -1.3
538,110 - MPMX19_05052 0.80 +1.1
538,110 - MPMX19_05052 0.80 +1.1
538,110 - MPMX19_05052 0.80 -1.1
538,110 - MPMX19_05052 0.80 -0.9
538,110 - MPMX19_05052 0.80 -0.5
538,110 - MPMX19_05052 0.80 +0.5
538,599 + MPMX19_05053 0.15 -1.0
538,599 + MPMX19_05053 0.15 -0.5
538,599 + MPMX19_05053 0.15 +0.2
538,599 + MPMX19_05053 0.15 -0.3
538,599 + MPMX19_05053 0.15 -0.8
538,599 + MPMX19_05053 0.15 -1.9
538,599 + MPMX19_05053 0.15 -0.7
538,599 + MPMX19_05053 0.15 -0.4
538,600 - MPMX19_05053 0.15 +0.9
538,600 - MPMX19_05053 0.15 +0.9
538,600 - MPMX19_05053 0.15 -0.4
538,600 - MPMX19_05053 0.15 -1.9
538,600 - MPMX19_05053 0.15 -0.5
538,600 - MPMX19_05053 0.15 -0.6
538,600 - MPMX19_05053 0.15 +0.1
538,600 - MPMX19_05053 0.15 +0.3
538,600 - MPMX19_05053 0.15 -0.7
538,720 - MPMX19_05053 0.31 +0.5
538,749 + MPMX19_05053 0.35 -1.0
538,749 + MPMX19_05053 0.35 +0.2
538,750 - MPMX19_05053 0.35 -0.1
538,764 + MPMX19_05053 0.37 -1.5
538,764 + MPMX19_05053 0.37 -1.7
538,764 + MPMX19_05053 0.37 -0.3
538,764 + MPMX19_05053 0.37 -1.9
538,764 + MPMX19_05053 0.37 +0.7
538,764 + MPMX19_05053 0.37 +0.7
538,764 + MPMX19_05053 0.37 -2.3
538,764 + MPMX19_05053 0.37 -1.8
538,764 + MPMX19_05053 0.37 -0.5
538,764 + MPMX19_05053 0.37 -0.1
538,765 - MPMX19_05053 0.37 +0.9
538,765 - MPMX19_05053 0.37 -0.5
538,765 - MPMX19_05053 0.37 -0.3
538,765 - MPMX19_05053 0.37 -1.2
538,765 - MPMX19_05053 0.37 -0.4
538,765 - MPMX19_05053 0.37 -0.1
538,765 - MPMX19_05053 0.37 -0.6
538,765 - MPMX19_05053 0.37 -0.9
538,765 - MPMX19_05053 0.37 -1.9
538,765 - MPMX19_05053 0.37 -0.8
538,818 + MPMX19_05053 0.44 -1.3
538,818 + MPMX19_05053 0.44 -0.7
538,818 + MPMX19_05053 0.44 +0.3
538,818 + MPMX19_05053 0.44 +0.9
538,819 - MPMX19_05053 0.44 -0.2
538,819 - MPMX19_05053 0.44 -0.5
538,833 + MPMX19_05053 0.45 +0.1
538,833 + MPMX19_05053 0.45 -0.4
538,834 - MPMX19_05053 0.46 +0.8
538,834 - MPMX19_05053 0.46 +0.9
538,834 - MPMX19_05053 0.46 +0.9
538,834 - MPMX19_05053 0.46 -1.9
538,980 + MPMX19_05053 0.64 -1.3
538,981 - MPMX19_05053 0.65 -0.3
538,981 - MPMX19_05053 0.65 -0.5
539,040 + MPMX19_05053 0.72 -0.3
539,040 + MPMX19_05053 0.72 -0.0
539,040 + MPMX19_05053 0.72 -1.1
539,041 - MPMX19_05053 0.72 -1.0
539,041 - MPMX19_05053 0.72 -0.6
539,306 + +1.0
539,306 + -1.8
539,306 + +1.2
539,306 + -1.4
539,306 + +0.6
539,306 + +0.5
539,307 - +0.2
539,307 - -0.6
539,309 - +0.1
539,309 - -0.8
539,309 - +0.1
539,322 + -3.1
539,322 + -2.3
539,322 + +0.2
539,322 + -0.7
539,323 - -0.2
539,328 + +0.4
539,328 + +0.2
539,328 + -0.3
539,329 - -0.5
539,342 + +0.5
539,342 + +0.2
539,343 - -0.3
539,343 - +0.0
539,343 - +0.1
539,343 - -1.7
539,345 - +0.4
539,345 - -1.1
539,345 - -1.0
539,345 - +0.2
539,345 - +0.0
539,345 - -0.7
539,345 - -0.5
539,345 - -0.9
539,351 - +0.9
539,351 - -0.1
539,351 - -0.8
539,351 - +1.2
539,351 - -0.7
539,351 - +0.4
539,351 - -0.7
539,351 - -1.1
539,351 - -0.1
539,351 - -0.2
539,351 - -0.8
539,351 - -1.7
539,393 + +0.5
539,422 + +0.6
539,423 - -2.3
539,664 + MPMX19_05054 0.23 -1.9
539,664 + MPMX19_05054 0.23 -0.5
539,664 + MPMX19_05054 0.23 +0.3
539,664 + MPMX19_05054 0.23 +0.9
539,664 + MPMX19_05054 0.23 +0.8
539,664 + MPMX19_05054 0.23 +0.3
539,664 + MPMX19_05054 0.23 +0.5
539,664 + MPMX19_05054 0.23 -0.5
539,664 + MPMX19_05054 0.23 +0.4
539,665 - MPMX19_05054 0.23 +0.4
539,665 - MPMX19_05054 0.23 -0.2
539,665 - MPMX19_05054 0.23 +2.5
539,665 - MPMX19_05054 0.23 -0.2
539,665 - MPMX19_05054 0.23 +1.3
539,665 - MPMX19_05054 0.23 +1.8
539,665 - MPMX19_05054 0.23 -1.7
539,665 - MPMX19_05054 0.23 +0.4
539,665 - MPMX19_05054 0.23 -0.7
539,665 - MPMX19_05054 0.23 +1.5
539,823 + MPMX19_05054 0.40 +1.3
539,824 - MPMX19_05054 0.40 -0.7
539,853 + MPMX19_05054 0.43 +0.2
539,853 + MPMX19_05054 0.43 -1.0
539,853 + MPMX19_05054 0.43 -0.2
539,853 + MPMX19_05054 0.43 -0.1
539,853 + MPMX19_05054 0.43 -0.2
539,853 + MPMX19_05054 0.43 -1.6
539,854 - MPMX19_05054 0.43 +0.1
539,854 - MPMX19_05054 0.43 +0.1
539,946 + MPMX19_05054 0.53 -1.5
540,006 + MPMX19_05054 0.59 -0.1
540,006 + MPMX19_05054 0.59 -1.7
540,006 + MPMX19_05054 0.59 +0.6
540,006 + MPMX19_05054 0.59 +0.1
540,006 + MPMX19_05054 0.59 +0.5
540,006 + MPMX19_05054 0.59 -1.7
540,006 + MPMX19_05054 0.59 +0.9
540,006 + MPMX19_05054 0.59 -1.1
540,006 + MPMX19_05054 0.59 +0.0
540,006 + MPMX19_05054 0.59 +0.7
540,006 + MPMX19_05054 0.59 -1.3
540,007 - MPMX19_05054 0.60 +0.1
540,007 - MPMX19_05054 0.60 +0.3
540,007 - MPMX19_05054 0.60 +0.1
540,007 - MPMX19_05054 0.60 -1.1
540,007 - MPMX19_05054 0.60 +0.4
540,007 - MPMX19_05054 0.60 -0.8
540,007 - MPMX19_05054 0.60 -0.7
540,007 - MPMX19_05054 0.60 -0.7
540,027 + MPMX19_05054 0.62 -0.2
540,027 + MPMX19_05054 0.62 +0.2
540,027 + MPMX19_05054 0.62 -0.7
540,027 + MPMX19_05054 0.62 -0.0
540,027 + MPMX19_05054 0.62 -0.8
540,027 + MPMX19_05054 0.62 +0.8
540,027 + MPMX19_05054 0.62 -0.4
540,027 + MPMX19_05054 0.62 -0.1
540,028 - MPMX19_05054 0.62 +0.0
540,028 - MPMX19_05054 0.62 -1.8

Or see this region's nucleotide sequence