Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04986 and MPMX19_04987 are separated by 41 nucleotides MPMX19_04987 and MPMX19_04988 are separated by 28 nucleotides MPMX19_04988 and MPMX19_04989 are separated by 23 nucleotides
MPMX19_04986: MPMX19_04986 - hypothetical protein, at 463,329 to 463,973
_04986
MPMX19_04987: MPMX19_04987 - hypothetical protein, at 464,015 to 464,938
_04987
MPMX19_04988: MPMX19_04988 - hypothetical protein, at 464,967 to 465,848
_04988
MPMX19_04989: MPMX19_04989 - K(+)/H(+) antiporter NhaP2, at 465,872 to 468,451
_04989
Position (kb) 464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2 at 464.268 kb on + strand, within MPMX19_04987 at 464.268 kb on + strand, within MPMX19_04987 at 464.268 kb on + strand, within MPMX19_04987 at 464.269 kb on - strand, within MPMX19_04987 at 464.269 kb on - strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.324 kb on + strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.327 kb on + strand, within MPMX19_04987 at 464.327 kb on + strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.574 kb on - strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.790 kb on - strand, within MPMX19_04987 at 464.790 kb on - strand, within MPMX19_04987 at 465.088 kb on + strand, within MPMX19_04988 at 465.088 kb on + strand, within MPMX19_04988 at 465.088 kb on + strand, within MPMX19_04988 at 465.088 kb on + strand, within MPMX19_04988 at 465.088 kb on + strand, within MPMX19_04988 at 465.089 kb on - strand, within MPMX19_04988 at 465.089 kb on - strand, within MPMX19_04988 at 465.089 kb on - strand, within MPMX19_04988 at 465.089 kb on - strand, within MPMX19_04988 at 465.271 kb on + strand, within MPMX19_04988 at 465.271 kb on + strand, within MPMX19_04988 at 465.271 kb on + strand, within MPMX19_04988 at 465.271 kb on + strand, within MPMX19_04988 at 465.271 kb on + strand, within MPMX19_04988 at 465.272 kb on - strand, within MPMX19_04988 at 465.272 kb on - strand, within MPMX19_04988 at 465.272 kb on - strand, within MPMX19_04988 at 465.272 kb on - strand, within MPMX19_04988 at 465.272 kb on - strand, within MPMX19_04988 at 465.326 kb on - strand, within MPMX19_04988 at 465.326 kb on - strand, within MPMX19_04988 at 465.326 kb on - strand, within MPMX19_04988 at 465.326 kb on - strand, within MPMX19_04988 at 465.368 kb on - strand, within MPMX19_04988 at 465.587 kb on + strand, within MPMX19_04988 at 465.588 kb on - strand, within MPMX19_04988 at 465.588 kb on - strand, within MPMX19_04988 at 465.592 kb on + strand, within MPMX19_04988 at 465.592 kb on + strand, within MPMX19_04988 at 465.592 kb on + strand, within MPMX19_04988 at 465.592 kb on + strand, within MPMX19_04988 at 465.592 kb on + strand, within MPMX19_04988 at 465.592 kb on + strand, within MPMX19_04988 at 465.593 kb on - strand, within MPMX19_04988 at 465.593 kb on - strand, within MPMX19_04988 at 465.593 kb on - strand, within MPMX19_04988 at 465.593 kb on - strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.742 kb on + strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.743 kb on - strand, within MPMX19_04988 at 465.754 kb on + strand, within MPMX19_04988 at 465.755 kb on - strand, within MPMX19_04988 at 465.755 kb on - strand, within MPMX19_04988 at 465.755 kb on - strand, within MPMX19_04988 at 466.014 kb on + strand at 466.014 kb on + strand at 466.014 kb on + strand at 466.014 kb on + strand at 466.015 kb on - strand at 466.015 kb on - strand at 466.414 kb on - strand, within MPMX19_04989 at 466.452 kb on + strand, within MPMX19_04989 at 466.452 kb on + strand, within MPMX19_04989 at 466.453 kb on - strand, within MPMX19_04989 at 466.453 kb on - strand, within MPMX19_04989 at 466.453 kb on - strand, within MPMX19_04989 at 466.453 kb on - strand, within MPMX19_04989 at 466.477 kb on - strand, within MPMX19_04989 at 466.477 kb on - strand, within MPMX19_04989 at 466.485 kb on + strand, within MPMX19_04989 at 466.486 kb on - strand, within MPMX19_04989 at 466.765 kb on - strand, within MPMX19_04989
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 464,268 + MPMX19_04987 0.27 -0.9 464,268 + MPMX19_04987 0.27 -0.3 464,268 + MPMX19_04987 0.27 +0.5 464,269 - MPMX19_04987 0.27 -1.0 464,269 - MPMX19_04987 0.27 -0.2 464,300 + MPMX19_04987 0.31 +0.4 464,300 + MPMX19_04987 0.31 +0.3 464,300 + MPMX19_04987 0.31 -1.9 464,300 + MPMX19_04987 0.31 +1.1 464,300 + MPMX19_04987 0.31 -0.1 464,300 + MPMX19_04987 0.31 -0.0 464,300 + MPMX19_04987 0.31 +1.0 464,300 + MPMX19_04987 0.31 -0.4 464,300 + MPMX19_04987 0.31 -0.4 464,300 + MPMX19_04987 0.31 -0.7 464,300 + MPMX19_04987 0.31 -0.2 464,300 + MPMX19_04987 0.31 +0.1 464,300 + MPMX19_04987 0.31 -0.4 464,300 + MPMX19_04987 0.31 -0.5 464,300 + MPMX19_04987 0.31 -0.5 464,300 + MPMX19_04987 0.31 +0.8 464,300 + MPMX19_04987 0.31 +1.5 464,300 + MPMX19_04987 0.31 -0.1 464,300 + MPMX19_04987 0.31 -0.7 464,300 + MPMX19_04987 0.31 +0.7 464,300 + MPMX19_04987 0.31 -1.6 464,300 + MPMX19_04987 0.31 +0.5 464,300 + MPMX19_04987 0.31 -2.3 464,300 + MPMX19_04987 0.31 +0.1 464,300 + MPMX19_04987 0.31 +2.3 464,300 + MPMX19_04987 0.31 -0.3 464,300 + MPMX19_04987 0.31 -0.2 464,300 + MPMX19_04987 0.31 +0.5 464,300 + MPMX19_04987 0.31 -0.3 464,300 + MPMX19_04987 0.31 +0.1 464,300 + MPMX19_04987 0.31 -1.0 464,300 + MPMX19_04987 0.31 +0.2 464,301 - MPMX19_04987 0.31 +0.1 464,301 - MPMX19_04987 0.31 -1.5 464,301 - MPMX19_04987 0.31 +1.0 464,301 - MPMX19_04987 0.31 -0.7 464,301 - MPMX19_04987 0.31 -0.6 464,301 - MPMX19_04987 0.31 +0.4 464,301 - MPMX19_04987 0.31 -0.3 464,301 - MPMX19_04987 0.31 +0.7 464,301 - MPMX19_04987 0.31 -1.6 464,301 - MPMX19_04987 0.31 -0.5 464,301 - MPMX19_04987 0.31 -1.7 464,301 - MPMX19_04987 0.31 +0.1 464,301 - MPMX19_04987 0.31 +0.3 464,301 - MPMX19_04987 0.31 +0.0 464,301 - MPMX19_04987 0.31 -0.2 464,301 - MPMX19_04987 0.31 -1.2 464,301 - MPMX19_04987 0.31 +0.1 464,301 - MPMX19_04987 0.31 -0.6 464,301 - MPMX19_04987 0.31 +2.1 464,301 - MPMX19_04987 0.31 +0.2 464,301 - MPMX19_04987 0.31 -0.9 464,301 - MPMX19_04987 0.31 -2.0 464,301 - MPMX19_04987 0.31 +0.3 464,324 + MPMX19_04987 0.33 +0.5 464,325 - MPMX19_04987 0.34 +0.0 464,325 - MPMX19_04987 0.34 +0.2 464,325 - MPMX19_04987 0.34 +1.3 464,325 - MPMX19_04987 0.34 -1.9 464,327 + MPMX19_04987 0.34 -0.8 464,327 + MPMX19_04987 0.34 +0.6 464,328 - MPMX19_04987 0.34 -0.6 464,328 - MPMX19_04987 0.34 +0.4 464,328 - MPMX19_04987 0.34 -0.3 464,328 - MPMX19_04987 0.34 +1.0 464,328 - MPMX19_04987 0.34 +0.1 464,574 - MPMX19_04987 0.60 -0.5 464,789 + MPMX19_04987 0.84 +0.2 464,789 + MPMX19_04987 0.84 -1.5 464,789 + MPMX19_04987 0.84 +0.9 464,789 + MPMX19_04987 0.84 -0.7 464,790 - MPMX19_04987 0.84 -0.6 464,790 - MPMX19_04987 0.84 +0.1 465,088 + MPMX19_04988 0.14 -0.6 465,088 + MPMX19_04988 0.14 -0.9 465,088 + MPMX19_04988 0.14 +0.5 465,088 + MPMX19_04988 0.14 +0.4 465,088 + MPMX19_04988 0.14 +0.4 465,089 - MPMX19_04988 0.14 +0.7 465,089 - MPMX19_04988 0.14 +0.2 465,089 - MPMX19_04988 0.14 -0.4 465,089 - MPMX19_04988 0.14 +0.1 465,271 + MPMX19_04988 0.34 +1.0 465,271 + MPMX19_04988 0.34 -0.7 465,271 + MPMX19_04988 0.34 +1.5 465,271 + MPMX19_04988 0.34 -0.5 465,271 + MPMX19_04988 0.34 -0.8 465,272 - MPMX19_04988 0.35 +0.1 465,272 - MPMX19_04988 0.35 -0.8 465,272 - MPMX19_04988 0.35 -0.6 465,272 - MPMX19_04988 0.35 -1.2 465,272 - MPMX19_04988 0.35 -1.0 465,326 - MPMX19_04988 0.41 +0.9 465,326 - MPMX19_04988 0.41 -1.1 465,326 - MPMX19_04988 0.41 +1.5 465,326 - MPMX19_04988 0.41 +0.1 465,368 - MPMX19_04988 0.45 -0.3 465,587 + MPMX19_04988 0.70 +0.8 465,588 - MPMX19_04988 0.70 +0.1 465,588 - MPMX19_04988 0.70 -0.3 465,592 + MPMX19_04988 0.71 -0.9 465,592 + MPMX19_04988 0.71 +0.2 465,592 + MPMX19_04988 0.71 +1.7 465,592 + MPMX19_04988 0.71 -0.5 465,592 + MPMX19_04988 0.71 +0.1 465,592 + MPMX19_04988 0.71 -0.8 465,593 - MPMX19_04988 0.71 -0.3 465,593 - MPMX19_04988 0.71 -1.1 465,593 - MPMX19_04988 0.71 -0.1 465,593 - MPMX19_04988 0.71 +1.0 465,742 + MPMX19_04988 0.88 +0.2 465,742 + MPMX19_04988 0.88 -0.3 465,742 + MPMX19_04988 0.88 -0.0 465,742 + MPMX19_04988 0.88 -1.4 465,742 + MPMX19_04988 0.88 -0.5 465,742 + MPMX19_04988 0.88 +0.1 465,742 + MPMX19_04988 0.88 -1.1 465,742 + MPMX19_04988 0.88 -0.3 465,743 - MPMX19_04988 0.88 -0.8 465,743 - MPMX19_04988 0.88 -0.3 465,743 - MPMX19_04988 0.88 -2.2 465,743 - MPMX19_04988 0.88 +0.3 465,743 - MPMX19_04988 0.88 +0.5 465,743 - MPMX19_04988 0.88 -0.6 465,743 - MPMX19_04988 0.88 -1.0 465,754 + MPMX19_04988 0.89 +0.8 465,755 - MPMX19_04988 0.89 -0.6 465,755 - MPMX19_04988 0.89 +0.7 465,755 - MPMX19_04988 0.89 -0.6 466,014 + -1.4 466,014 + -0.2 466,014 + -0.6 466,014 + -1.5 466,015 - -1.0 466,015 - +0.3 466,414 - MPMX19_04989 0.21 -0.0 466,452 + MPMX19_04989 0.22 +0.3 466,452 + MPMX19_04989 0.22 -1.0 466,453 - MPMX19_04989 0.23 -0.0 466,453 - MPMX19_04989 0.23 -0.8 466,453 - MPMX19_04989 0.23 -0.8 466,453 - MPMX19_04989 0.23 -1.6 466,477 - MPMX19_04989 0.23 -0.2 466,477 - MPMX19_04989 0.23 +0.9 466,485 + MPMX19_04989 0.24 -0.2 466,486 - MPMX19_04989 0.24 -1.2 466,765 - MPMX19_04989 0.35 -0.9
Or see this region's nucleotide sequence