Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04983 and MPMX19_04984 are separated by 162 nucleotides MPMX19_04984 and MPMX19_04985 are separated by 112 nucleotides
MPMX19_04983: MPMX19_04983 - hypothetical protein, at 456,864 to 460,361
_04983
MPMX19_04984: MPMX19_04984 - Alcohol dehydrogenase [acceptor], at 460,524 to 462,173
_04984
MPMX19_04985: MPMX19_04985 - HTH-type transcriptional regulator DmlR, at 462,286 to 463,206
_04985
Position (kb) 460
461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 459.757 kb on + strand, within MPMX19_04983 at 459.757 kb on + strand, within MPMX19_04983 at 459.757 kb on + strand, within MPMX19_04983 at 459.757 kb on + strand, within MPMX19_04983 at 459.758 kb on - strand, within MPMX19_04983 at 459.758 kb on - strand, within MPMX19_04983 at 459.775 kb on + strand, within MPMX19_04983 at 459.775 kb on + strand, within MPMX19_04983 at 459.776 kb on - strand, within MPMX19_04983 at 459.776 kb on - strand, within MPMX19_04983 at 459.776 kb on - strand, within MPMX19_04983 at 459.776 kb on - strand, within MPMX19_04983 at 459.916 kb on + strand, within MPMX19_04983 at 459.917 kb on - strand, within MPMX19_04983 at 459.974 kb on - strand, within MPMX19_04983 at 460.156 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.252 kb on + strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.253 kb on - strand at 460.276 kb on + strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.294 kb on + strand at 460.294 kb on + strand at 460.294 kb on + strand at 460.294 kb on + strand at 460.295 kb on - strand at 460.295 kb on - strand at 460.295 kb on - strand at 460.295 kb on - strand at 460.295 kb on - strand at 460.295 kb on - strand at 460.365 kb on + strand at 460.365 kb on + strand at 460.365 kb on + strand at 460.365 kb on + strand at 460.365 kb on + strand at 460.366 kb on - strand at 460.366 kb on - strand at 460.366 kb on - strand at 460.366 kb on - strand at 460.366 kb on - strand at 460.525 kb on + strand at 460.728 kb on - strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.813 kb on + strand, within MPMX19_04984 at 460.814 kb on - strand, within MPMX19_04984 at 460.814 kb on - strand, within MPMX19_04984 at 460.814 kb on - strand, within MPMX19_04984 at 460.814 kb on - strand, within MPMX19_04984 at 460.814 kb on - strand, within MPMX19_04984 at 460.814 kb on - strand, within MPMX19_04984 at 460.828 kb on + strand, within MPMX19_04984 at 460.828 kb on + strand, within MPMX19_04984 at 460.828 kb on + strand, within MPMX19_04984 at 460.829 kb on - strand, within MPMX19_04984 at 460.829 kb on - strand, within MPMX19_04984 at 460.829 kb on - strand, within MPMX19_04984 at 460.829 kb on - strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.915 kb on + strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 460.916 kb on - strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.071 kb on + strand, within MPMX19_04984 at 461.072 kb on - strand, within MPMX19_04984 at 461.072 kb on - strand, within MPMX19_04984 at 461.072 kb on - strand, within MPMX19_04984 at 461.072 kb on - strand, within MPMX19_04984 at 461.072 kb on - strand, within MPMX19_04984 at 461.168 kb on - strand, within MPMX19_04984 at 461.168 kb on - strand, within MPMX19_04984 at 461.168 kb on - strand, within MPMX19_04984 at 461.168 kb on - strand, within MPMX19_04984 at 461.168 kb on - strand, within MPMX19_04984 at 461.168 kb on - strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.242 kb on + strand, within MPMX19_04984 at 461.243 kb on - strand, within MPMX19_04984 at 461.243 kb on - strand, within MPMX19_04984 at 461.243 kb on - strand, within MPMX19_04984 at 461.243 kb on - strand, within MPMX19_04984 at 461.243 kb on - strand, within MPMX19_04984 at 461.243 kb on - strand, within MPMX19_04984 at 461.756 kb on - strand, within MPMX19_04984 at 461.756 kb on - strand, within MPMX19_04984 at 461.837 kb on - strand, within MPMX19_04984 at 461.912 kb on - strand, within MPMX19_04984 at 461.996 kb on - strand, within MPMX19_04984 at 462.127 kb on + strand at 462.127 kb on + strand at 462.127 kb on + strand at 462.128 kb on - strand at 462.128 kb on - strand at 462.128 kb on - strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.213 kb on - strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.216 kb on - strand at 462.458 kb on + strand, within MPMX19_04985 at 462.459 kb on - strand, within MPMX19_04985 at 462.893 kb on + strand, within MPMX19_04985 at 463.172 kb on + strand at 463.172 kb on + strand at 463.172 kb on + strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 459,757 + MPMX19_04983 0.83 -0.8 459,757 + MPMX19_04983 0.83 +0.2 459,757 + MPMX19_04983 0.83 -2.1 459,757 + MPMX19_04983 0.83 -0.4 459,758 - MPMX19_04983 0.83 -0.1 459,758 - MPMX19_04983 0.83 -0.4 459,775 + MPMX19_04983 0.83 +0.0 459,775 + MPMX19_04983 0.83 -0.2 459,776 - MPMX19_04983 0.83 +0.0 459,776 - MPMX19_04983 0.83 +0.6 459,776 - MPMX19_04983 0.83 -1.0 459,776 - MPMX19_04983 0.83 +0.2 459,916 + MPMX19_04983 0.87 -0.3 459,917 - MPMX19_04983 0.87 +0.3 459,974 - MPMX19_04983 0.89 +0.2 460,156 + -0.6 460,252 + +1.3 460,252 + -2.4 460,252 + -0.2 460,252 + -0.2 460,252 + +0.3 460,252 + -0.5 460,252 + +0.1 460,252 + +0.6 460,252 + +0.1 460,252 + -1.3 460,252 + -1.8 460,252 + -0.3 460,252 + -0.4 460,253 - +0.8 460,253 - -1.7 460,253 - -0.4 460,253 - +0.6 460,253 - +0.0 460,253 - +0.8 460,253 - -0.6 460,253 - -1.4 460,253 - -0.3 460,253 - +0.7 460,276 + +0.7 460,277 - -0.8 460,277 - +0.1 460,294 + +0.5 460,294 + -0.8 460,294 + +0.9 460,294 + -0.3 460,295 - -1.6 460,295 - -0.2 460,295 - -0.7 460,295 - +0.9 460,295 - +1.2 460,295 - -1.3 460,365 + +1.0 460,365 + -0.0 460,365 + -0.6 460,365 + -0.9 460,365 + -0.6 460,366 - +0.7 460,366 - -1.3 460,366 - -1.6 460,366 - -2.2 460,366 - -0.6 460,525 + -0.5 460,728 - MPMX19_04984 0.12 +1.6 460,813 + MPMX19_04984 0.18 -1.0 460,813 + MPMX19_04984 0.18 +2.4 460,813 + MPMX19_04984 0.18 -1.3 460,813 + MPMX19_04984 0.18 -0.8 460,813 + MPMX19_04984 0.18 -0.1 460,813 + MPMX19_04984 0.18 +0.2 460,813 + MPMX19_04984 0.18 +1.0 460,813 + MPMX19_04984 0.18 -0.7 460,813 + MPMX19_04984 0.18 +0.1 460,813 + MPMX19_04984 0.18 -0.7 460,813 + MPMX19_04984 0.18 +0.8 460,813 + MPMX19_04984 0.18 +0.6 460,813 + MPMX19_04984 0.18 -0.0 460,813 + MPMX19_04984 0.18 +0.6 460,813 + MPMX19_04984 0.18 +1.0 460,814 - MPMX19_04984 0.18 +0.4 460,814 - MPMX19_04984 0.18 +0.4 460,814 - MPMX19_04984 0.18 +0.2 460,814 - MPMX19_04984 0.18 -0.2 460,814 - MPMX19_04984 0.18 -1.0 460,814 - MPMX19_04984 0.18 -0.8 460,828 + MPMX19_04984 0.18 -1.0 460,828 + MPMX19_04984 0.18 +0.6 460,828 + MPMX19_04984 0.18 -1.9 460,829 - MPMX19_04984 0.18 +0.4 460,829 - MPMX19_04984 0.18 +0.0 460,829 - MPMX19_04984 0.18 +0.2 460,829 - MPMX19_04984 0.18 -0.9 460,915 + MPMX19_04984 0.24 -1.3 460,915 + MPMX19_04984 0.24 -0.3 460,915 + MPMX19_04984 0.24 +0.9 460,915 + MPMX19_04984 0.24 -1.6 460,915 + MPMX19_04984 0.24 -2.0 460,915 + MPMX19_04984 0.24 -1.3 460,915 + MPMX19_04984 0.24 -0.1 460,915 + MPMX19_04984 0.24 +1.6 460,915 + MPMX19_04984 0.24 +0.6 460,915 + MPMX19_04984 0.24 +2.0 460,915 + MPMX19_04984 0.24 -0.2 460,915 + MPMX19_04984 0.24 -0.4 460,915 + MPMX19_04984 0.24 -0.6 460,916 - MPMX19_04984 0.24 +0.2 460,916 - MPMX19_04984 0.24 -0.3 460,916 - MPMX19_04984 0.24 +1.0 460,916 - MPMX19_04984 0.24 -1.9 460,916 - MPMX19_04984 0.24 +0.2 460,916 - MPMX19_04984 0.24 +0.6 460,916 - MPMX19_04984 0.24 -0.9 460,916 - MPMX19_04984 0.24 -0.0 461,071 + MPMX19_04984 0.33 -0.8 461,071 + MPMX19_04984 0.33 +0.1 461,071 + MPMX19_04984 0.33 -1.0 461,071 + MPMX19_04984 0.33 +0.3 461,071 + MPMX19_04984 0.33 +0.2 461,071 + MPMX19_04984 0.33 -1.4 461,071 + MPMX19_04984 0.33 +0.8 461,071 + MPMX19_04984 0.33 +0.4 461,071 + MPMX19_04984 0.33 -0.2 461,071 + MPMX19_04984 0.33 +0.2 461,071 + MPMX19_04984 0.33 +0.7 461,072 - MPMX19_04984 0.33 +0.3 461,072 - MPMX19_04984 0.33 +2.0 461,072 - MPMX19_04984 0.33 -0.4 461,072 - MPMX19_04984 0.33 -1.4 461,072 - MPMX19_04984 0.33 -0.2 461,168 - MPMX19_04984 0.39 +0.2 461,168 - MPMX19_04984 0.39 -0.7 461,168 - MPMX19_04984 0.39 +0.7 461,168 - MPMX19_04984 0.39 -1.8 461,168 - MPMX19_04984 0.39 +0.2 461,168 - MPMX19_04984 0.39 -0.6 461,242 + MPMX19_04984 0.44 +0.4 461,242 + MPMX19_04984 0.44 -1.0 461,242 + MPMX19_04984 0.44 +0.4 461,242 + MPMX19_04984 0.44 -1.0 461,242 + MPMX19_04984 0.44 +0.9 461,242 + MPMX19_04984 0.44 -2.0 461,242 + MPMX19_04984 0.44 -0.3 461,242 + MPMX19_04984 0.44 +2.9 461,243 - MPMX19_04984 0.44 -0.9 461,243 - MPMX19_04984 0.44 +0.1 461,243 - MPMX19_04984 0.44 -1.3 461,243 - MPMX19_04984 0.44 -0.2 461,243 - MPMX19_04984 0.44 -0.6 461,243 - MPMX19_04984 0.44 -1.3 461,756 - MPMX19_04984 0.75 -1.3 461,756 - MPMX19_04984 0.75 -1.0 461,837 - MPMX19_04984 0.80 +0.5 461,912 - MPMX19_04984 0.84 -0.3 461,996 - MPMX19_04984 0.89 -0.9 462,127 + -0.4 462,127 + +0.5 462,127 + +1.0 462,128 - -0.3 462,128 - -1.5 462,128 - +0.4 462,212 + +1.3 462,212 + -0.4 462,212 + -0.4 462,212 + +0.3 462,213 - -0.3 462,215 + -2.3 462,215 + +1.3 462,215 + -0.4 462,215 + -1.0 462,215 + -1.0 462,216 - -0.8 462,458 + MPMX19_04985 0.19 -0.4 462,459 - MPMX19_04985 0.19 +1.8 462,893 + MPMX19_04985 0.66 +0.5 463,172 + -1.4 463,172 + -0.5 463,172 + +0.2 463,173 - -1.6 463,173 - +0.3 463,173 - +0.4
Or see this region's nucleotide sequence