Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04961 and MPMX19_04962 are separated by 64 nucleotides MPMX19_04962 and MPMX19_04963 are separated by 87 nucleotides MPMX19_04963 and MPMX19_04964 are separated by 63 nucleotides
MPMX19_04961: MPMX19_04961 - hypothetical protein, at 424,769 to 425,533
_04961
MPMX19_04962: MPMX19_04962 - hypothetical protein, at 425,598 to 426,269
_04962
MPMX19_04963: MPMX19_04963 - Cysteine desulfurase IscS, at 426,357 to 427,499
_04963
MPMX19_04964: MPMX19_04964 - hypothetical protein, at 427,563 to 428,927
_04964
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.429 kb on + strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 426.049 kb on + strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962 at 426.898 kb on + strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.508 kb on - strand at 427.792 kb on + strand, within MPMX19_04964 at 427.792 kb on + strand, within MPMX19_04964 at 427.792 kb on + strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.993 kb on + strand, within MPMX19_04964 at 427.993 kb on + strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 428.002 kb on + strand, within MPMX19_04964 at 428.002 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.044 kb on + strand, within MPMX19_04964 at 428.044 kb on + strand, within MPMX19_04964 at 428.044 kb on + strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.420 kb on - strand, within MPMX19_04964 at 428.420 kb on - strand, within MPMX19_04964 at 428.420 kb on - strand, within MPMX19_04964
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 425,411 + MPMX19_04961 0.84 -1.4 425,411 + MPMX19_04961 0.84 -0.3 425,411 + MPMX19_04961 0.84 -1.3 425,411 + MPMX19_04961 0.84 -0.4 425,411 + MPMX19_04961 0.84 -0.0 425,411 + MPMX19_04961 0.84 +0.6 425,411 + MPMX19_04961 0.84 -0.8 425,411 + MPMX19_04961 0.84 +0.4 425,412 - MPMX19_04961 0.84 -0.8 425,412 - MPMX19_04961 0.84 -0.2 425,412 - MPMX19_04961 0.84 -0.3 425,412 - MPMX19_04961 0.84 -0.3 425,412 - MPMX19_04961 0.84 +0.2 425,412 - MPMX19_04961 0.84 +0.6 425,412 - MPMX19_04961 0.84 -3.5 425,429 + MPMX19_04961 0.86 -1.5 425,430 - MPMX19_04961 0.86 -2.3 425,430 - MPMX19_04961 0.86 -0.4 425,430 - MPMX19_04961 0.86 -1.0 425,617 + -1.4 425,617 + -1.0 425,617 + -1.2 425,617 + -0.5 425,617 + -1.5 425,617 + -1.0 425,618 - -1.4 425,618 - -0.0 425,618 - -0.8 425,618 - +0.1 426,049 + MPMX19_04962 0.67 +0.2 426,050 - MPMX19_04962 0.67 -2.3 426,050 - MPMX19_04962 0.67 +0.3 426,898 + MPMX19_04963 0.47 -1.0 426,899 - MPMX19_04963 0.47 -0.6 426,899 - MPMX19_04963 0.47 -0.3 426,899 - MPMX19_04963 0.47 -0.4 426,899 - MPMX19_04963 0.47 -0.3 427,492 + +0.2 427,492 + -0.3 427,492 + -1.0 427,492 + -1.0 427,492 + +0.2 427,492 + -1.4 427,492 + -0.6 427,493 - -0.0 427,493 - -0.8 427,493 - -1.3 427,493 - +0.2 427,493 - -0.3 427,493 - +0.5 427,493 - -1.1 427,493 - -0.3 427,493 - -0.0 427,493 - +0.2 427,493 - +0.4 427,508 - -0.8 427,792 + MPMX19_04964 0.17 -0.6 427,792 + MPMX19_04964 0.17 +0.9 427,792 + MPMX19_04964 0.17 -2.0 427,793 - MPMX19_04964 0.17 -1.1 427,793 - MPMX19_04964 0.17 +1.4 427,793 - MPMX19_04964 0.17 +0.5 427,793 - MPMX19_04964 0.17 -2.5 427,793 - MPMX19_04964 0.17 -0.3 427,793 - MPMX19_04964 0.17 +0.1 427,793 - MPMX19_04964 0.17 -0.6 427,793 - MPMX19_04964 0.17 -2.3 427,993 + MPMX19_04964 0.32 -1.4 427,993 + MPMX19_04964 0.32 -1.3 427,994 - MPMX19_04964 0.32 -0.7 427,994 - MPMX19_04964 0.32 -1.8 427,994 - MPMX19_04964 0.32 -2.1 427,994 - MPMX19_04964 0.32 -0.8 427,996 + MPMX19_04964 0.32 -1.3 427,996 + MPMX19_04964 0.32 -1.0 427,996 + MPMX19_04964 0.32 -0.9 427,996 + MPMX19_04964 0.32 +1.2 427,996 + MPMX19_04964 0.32 +0.6 427,996 + MPMX19_04964 0.32 -0.1 427,996 + MPMX19_04964 0.32 +0.1 427,996 + MPMX19_04964 0.32 +1.0 427,996 + MPMX19_04964 0.32 -0.8 427,996 + MPMX19_04964 0.32 +0.5 427,996 + MPMX19_04964 0.32 -1.7 427,996 + MPMX19_04964 0.32 -1.8 427,996 + MPMX19_04964 0.32 -0.4 427,996 + MPMX19_04964 0.32 -0.3 427,996 + MPMX19_04964 0.32 +0.0 427,996 + MPMX19_04964 0.32 +0.3 427,997 - MPMX19_04964 0.32 -0.2 427,997 - MPMX19_04964 0.32 +0.5 427,997 - MPMX19_04964 0.32 -2.8 427,997 - MPMX19_04964 0.32 -1.6 427,997 - MPMX19_04964 0.32 +0.1 427,997 - MPMX19_04964 0.32 +1.4 427,997 - MPMX19_04964 0.32 -0.7 427,997 - MPMX19_04964 0.32 +0.0 427,997 - MPMX19_04964 0.32 +0.1 427,997 - MPMX19_04964 0.32 +0.9 427,997 - MPMX19_04964 0.32 -0.0 427,997 - MPMX19_04964 0.32 -0.8 427,997 - MPMX19_04964 0.32 +0.6 427,997 - MPMX19_04964 0.32 -1.4 427,997 - MPMX19_04964 0.32 +0.1 427,997 - MPMX19_04964 0.32 -1.3 427,997 - MPMX19_04964 0.32 -0.3 427,997 - MPMX19_04964 0.32 -0.7 427,997 - MPMX19_04964 0.32 +0.2 427,997 - MPMX19_04964 0.32 -0.5 427,997 - MPMX19_04964 0.32 -0.4 428,002 + MPMX19_04964 0.32 +0.6 428,002 + MPMX19_04964 0.32 -1.4 428,014 + MPMX19_04964 0.33 -0.8 428,014 + MPMX19_04964 0.33 -0.2 428,014 + MPMX19_04964 0.33 -0.3 428,014 + MPMX19_04964 0.33 -1.1 428,014 + MPMX19_04964 0.33 -2.6 428,014 + MPMX19_04964 0.33 +1.0 428,014 + MPMX19_04964 0.33 -0.9 428,014 + MPMX19_04964 0.33 -0.3 428,014 + MPMX19_04964 0.33 -0.4 428,014 + MPMX19_04964 0.33 -0.4 428,015 - MPMX19_04964 0.33 -1.3 428,015 - MPMX19_04964 0.33 -1.6 428,015 - MPMX19_04964 0.33 -2.0 428,015 - MPMX19_04964 0.33 -0.8 428,042 + MPMX19_04964 0.35 -2.3 428,042 + MPMX19_04964 0.35 +0.1 428,042 + MPMX19_04964 0.35 -2.4 428,042 + MPMX19_04964 0.35 -1.3 428,042 + MPMX19_04964 0.35 +1.0 428,042 + MPMX19_04964 0.35 +1.3 428,042 + MPMX19_04964 0.35 +0.4 428,042 + MPMX19_04964 0.35 +0.1 428,042 + MPMX19_04964 0.35 -0.9 428,042 + MPMX19_04964 0.35 -0.4 428,042 + MPMX19_04964 0.35 -0.4 428,042 + MPMX19_04964 0.35 +0.9 428,042 + MPMX19_04964 0.35 -0.0 428,042 + MPMX19_04964 0.35 -0.5 428,042 + MPMX19_04964 0.35 -1.7 428,042 + MPMX19_04964 0.35 +0.3 428,042 + MPMX19_04964 0.35 -0.0 428,042 + MPMX19_04964 0.35 -1.0 428,042 + MPMX19_04964 0.35 -0.0 428,042 + MPMX19_04964 0.35 +0.7 428,042 + MPMX19_04964 0.35 -0.8 428,043 - MPMX19_04964 0.35 -0.4 428,043 - MPMX19_04964 0.35 +0.8 428,043 - MPMX19_04964 0.35 -2.4 428,043 - MPMX19_04964 0.35 -0.4 428,043 - MPMX19_04964 0.35 -2.8 428,043 - MPMX19_04964 0.35 +0.1 428,043 - MPMX19_04964 0.35 -0.4 428,043 - MPMX19_04964 0.35 -0.4 428,043 - MPMX19_04964 0.35 -0.4 428,043 - MPMX19_04964 0.35 +0.2 428,043 - MPMX19_04964 0.35 -0.4 428,043 - MPMX19_04964 0.35 -0.0 428,043 - MPMX19_04964 0.35 -2.3 428,043 - MPMX19_04964 0.35 +0.2 428,043 - MPMX19_04964 0.35 -0.3 428,043 - MPMX19_04964 0.35 +0.1 428,043 - MPMX19_04964 0.35 -0.8 428,043 - MPMX19_04964 0.35 -1.7 428,044 + MPMX19_04964 0.35 +0.4 428,044 + MPMX19_04964 0.35 -1.8 428,044 + MPMX19_04964 0.35 +0.3 428,045 - MPMX19_04964 0.35 -0.3 428,045 - MPMX19_04964 0.35 -1.9 428,045 - MPMX19_04964 0.35 -0.6 428,045 - MPMX19_04964 0.35 +0.4 428,045 - MPMX19_04964 0.35 +0.6 428,045 - MPMX19_04964 0.35 -1.4 428,045 - MPMX19_04964 0.35 -2.0 428,045 - MPMX19_04964 0.35 -1.4 428,045 - MPMX19_04964 0.35 -1.0 428,045 - MPMX19_04964 0.35 -0.4 428,263 + MPMX19_04964 0.51 +0.3 428,263 + MPMX19_04964 0.51 +0.1 428,263 + MPMX19_04964 0.51 +0.9 428,263 + MPMX19_04964 0.51 -0.6 428,263 + MPMX19_04964 0.51 +0.7 428,264 - MPMX19_04964 0.51 -0.6 428,264 - MPMX19_04964 0.51 -2.0 428,264 - MPMX19_04964 0.51 +0.6 428,264 - MPMX19_04964 0.51 +0.8 428,264 - MPMX19_04964 0.51 +0.4 428,264 - MPMX19_04964 0.51 +0.2 428,383 + MPMX19_04964 0.60 +0.2 428,383 + MPMX19_04964 0.60 -2.4 428,383 + MPMX19_04964 0.60 -2.4 428,383 + MPMX19_04964 0.60 +0.0 428,383 + MPMX19_04964 0.60 -0.1 428,383 + MPMX19_04964 0.60 -0.0 428,383 + MPMX19_04964 0.60 -0.3 428,383 + MPMX19_04964 0.60 -1.3 428,383 + MPMX19_04964 0.60 -2.4 428,383 + MPMX19_04964 0.60 +0.5 428,383 + MPMX19_04964 0.60 -1.3 428,383 + MPMX19_04964 0.60 -1.9 428,383 + MPMX19_04964 0.60 -1.0 428,384 - MPMX19_04964 0.60 -1.0 428,384 - MPMX19_04964 0.60 -0.5 428,384 - MPMX19_04964 0.60 -0.5 428,384 - MPMX19_04964 0.60 -0.2 428,384 - MPMX19_04964 0.60 -0.6 428,384 - MPMX19_04964 0.60 -1.9 428,384 - MPMX19_04964 0.60 +0.7 428,419 + MPMX19_04964 0.63 -1.0 428,419 + MPMX19_04964 0.63 -1.6 428,419 + MPMX19_04964 0.63 +1.0 428,419 + MPMX19_04964 0.63 -1.0 428,419 + MPMX19_04964 0.63 -0.7 428,419 + MPMX19_04964 0.63 +0.2 428,419 + MPMX19_04964 0.63 -0.8 428,419 + MPMX19_04964 0.63 -0.3 428,420 - MPMX19_04964 0.63 -0.8 428,420 - MPMX19_04964 0.63 +2.0 428,420 - MPMX19_04964 0.63 -2.0
Or see this region's nucleotide sequence