Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04958

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04957 and MPMX19_04958 are separated by 45 nucleotidesMPMX19_04958 and MPMX19_04959 are separated by 42 nucleotidesMPMX19_04959 and MPMX19_04960 are separated by 172 nucleotides MPMX19_04957: MPMX19_04957 - 5-oxoprolinase subunit C, at 419,777 to 420,799 _04957 MPMX19_04958: MPMX19_04958 - Methyl-accepting chemotaxis protein, at 420,845 to 422,419 _04958 MPMX19_04959: MPMX19_04959 - 5-oxoprolinase subunit A, at 422,462 to 423,223 _04959 MPMX19_04960: MPMX19_04960 - hypothetical protein, at 423,396 to 424,202 _04960 Position (kb) 420 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 419.855 kb on + strandat 420.119 kb on + strand, within MPMX19_04957at 420.120 kb on - strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.190 kb on + strand, within MPMX19_04957at 420.190 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.591 kb on + strand, within MPMX19_04957at 420.592 kb on - strand, within MPMX19_04957at 420.592 kb on - strand, within MPMX19_04957at 420.737 kb on + strandat 420.865 kb on + strandat 420.866 kb on - strandat 420.866 kb on - strandat 420.930 kb on + strandat 421.094 kb on + strand, within MPMX19_04958at 421.094 kb on + strand, within MPMX19_04958at 421.094 kb on + strand, within MPMX19_04958at 421.095 kb on - strand, within MPMX19_04958at 421.095 kb on - strand, within MPMX19_04958at 421.095 kb on - strand, within MPMX19_04958at 422.606 kb on - strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.790 kb on + strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.791 kb on - strand, within MPMX19_04959at 422.810 kb on + strand, within MPMX19_04959at 422.810 kb on + strand, within MPMX19_04959at 422.810 kb on + strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.811 kb on - strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.975 kb on + strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 422.976 kb on - strand, within MPMX19_04959at 423.057 kb on + strand, within MPMX19_04959at 423.058 kb on - strand, within MPMX19_04959at 423.058 kb on - strand, within MPMX19_04959at 423.221 kb on + strandat 423.221 kb on + strandat 423.221 kb on + strandat 423.221 kb on + strandat 423.221 kb on + strandat 423.222 kb on - strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.250 kb on + strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.251 kb on - strandat 423.372 kb on - strandat 423.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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419,855 + +1.3
420,119 + MPMX19_04957 0.33 +0.0
420,120 - MPMX19_04957 0.34 -1.3
420,180 + MPMX19_04957 0.39 -0.6
420,180 + MPMX19_04957 0.39 +1.5
420,180 + MPMX19_04957 0.39 -0.3
420,180 + MPMX19_04957 0.39 -0.1
420,180 + MPMX19_04957 0.39 +0.7
420,180 + MPMX19_04957 0.39 +0.0
420,180 + MPMX19_04957 0.39 +1.4
420,180 + MPMX19_04957 0.39 +0.4
420,181 - MPMX19_04957 0.39 -0.2
420,181 - MPMX19_04957 0.39 -1.0
420,181 - MPMX19_04957 0.39 -0.5
420,181 - MPMX19_04957 0.39 -1.5
420,181 - MPMX19_04957 0.39 -0.5
420,181 - MPMX19_04957 0.39 -1.9
420,181 - MPMX19_04957 0.39 -2.0
420,181 - MPMX19_04957 0.39 -1.1
420,181 - MPMX19_04957 0.39 -0.7
420,190 + MPMX19_04957 0.40 -0.9
420,190 + MPMX19_04957 0.40 -1.5
420,344 + MPMX19_04957 0.55 +0.5
420,344 + MPMX19_04957 0.55 +0.2
420,344 + MPMX19_04957 0.55 -0.3
420,344 + MPMX19_04957 0.55 -0.9
420,344 + MPMX19_04957 0.55 -1.2
420,345 - MPMX19_04957 0.56 -0.8
420,345 - MPMX19_04957 0.56 -1.8
420,345 - MPMX19_04957 0.56 +1.9
420,345 - MPMX19_04957 0.56 +0.3
420,345 - MPMX19_04957 0.56 +1.5
420,345 - MPMX19_04957 0.56 -1.3
420,386 + MPMX19_04957 0.60 +0.5
420,386 + MPMX19_04957 0.60 -0.1
420,386 + MPMX19_04957 0.60 -1.3
420,386 + MPMX19_04957 0.60 -0.6
420,386 + MPMX19_04957 0.60 +0.9
420,387 - MPMX19_04957 0.60 +0.3
420,387 - MPMX19_04957 0.60 +0.4
420,387 - MPMX19_04957 0.60 -1.0
420,387 - MPMX19_04957 0.60 +0.2
420,387 - MPMX19_04957 0.60 -2.4
420,387 - MPMX19_04957 0.60 -0.3
420,387 - MPMX19_04957 0.60 -0.6
420,387 - MPMX19_04957 0.60 -1.8
420,387 - MPMX19_04957 0.60 +0.2
420,591 + MPMX19_04957 0.80 -1.5
420,592 - MPMX19_04957 0.80 -0.8
420,592 - MPMX19_04957 0.80 -0.5
420,737 + -0.1
420,865 + -0.8
420,866 - -0.1
420,866 - -1.4
420,930 + -0.6
421,094 + MPMX19_04958 0.16 -1.2
421,094 + MPMX19_04958 0.16 -1.4
421,094 + MPMX19_04958 0.16 -0.6
421,095 - MPMX19_04958 0.16 -0.7
421,095 - MPMX19_04958 0.16 -0.7
421,095 - MPMX19_04958 0.16 -0.5
422,606 - MPMX19_04959 0.19 -0.5
422,790 + MPMX19_04959 0.43 -0.8
422,790 + MPMX19_04959 0.43 -1.5
422,790 + MPMX19_04959 0.43 -1.0
422,790 + MPMX19_04959 0.43 -1.3
422,790 + MPMX19_04959 0.43 +0.1
422,790 + MPMX19_04959 0.43 -0.9
422,790 + MPMX19_04959 0.43 +0.1
422,790 + MPMX19_04959 0.43 -1.0
422,791 - MPMX19_04959 0.43 +1.1
422,791 - MPMX19_04959 0.43 +0.3
422,791 - MPMX19_04959 0.43 -1.0
422,791 - MPMX19_04959 0.43 -1.1
422,791 - MPMX19_04959 0.43 +0.3
422,791 - MPMX19_04959 0.43 +0.3
422,791 - MPMX19_04959 0.43 -0.1
422,791 - MPMX19_04959 0.43 -1.6
422,791 - MPMX19_04959 0.43 +1.3
422,791 - MPMX19_04959 0.43 -0.3
422,791 - MPMX19_04959 0.43 -1.2
422,810 + MPMX19_04959 0.46 -2.5
422,810 + MPMX19_04959 0.46 -0.9
422,810 + MPMX19_04959 0.46 -0.6
422,811 - MPMX19_04959 0.46 -0.8
422,811 - MPMX19_04959 0.46 +0.2
422,811 - MPMX19_04959 0.46 -1.3
422,811 - MPMX19_04959 0.46 +1.0
422,811 - MPMX19_04959 0.46 +0.5
422,811 - MPMX19_04959 0.46 +0.3
422,975 + MPMX19_04959 0.67 +0.3
422,975 + MPMX19_04959 0.67 -0.0
422,975 + MPMX19_04959 0.67 -0.5
422,975 + MPMX19_04959 0.67 -0.6
422,975 + MPMX19_04959 0.67 -1.5
422,975 + MPMX19_04959 0.67 -0.2
422,975 + MPMX19_04959 0.67 -2.0
422,976 - MPMX19_04959 0.67 -0.0
422,976 - MPMX19_04959 0.67 +0.2
422,976 - MPMX19_04959 0.67 -0.5
422,976 - MPMX19_04959 0.67 -0.3
422,976 - MPMX19_04959 0.67 -0.2
422,976 - MPMX19_04959 0.67 +0.3
422,976 - MPMX19_04959 0.67 +0.0
422,976 - MPMX19_04959 0.67 +0.7
423,057 + MPMX19_04959 0.78 -0.9
423,058 - MPMX19_04959 0.78 -1.5
423,058 - MPMX19_04959 0.78 -0.3
423,221 + -0.8
423,221 + -0.7
423,221 + -1.4
423,221 + +0.1
423,221 + -0.0
423,222 - -0.8
423,250 + -2.4
423,250 + +0.3
423,250 + -1.0
423,250 + +1.1
423,250 + +0.1
423,250 + -0.5
423,250 + -0.0
423,251 - +0.3
423,251 - -0.5
423,251 - -2.7
423,251 - -1.6
423,251 - -0.5
423,251 - -0.3
423,372 - -0.0
423,372 - -0.7

Or see this region's nucleotide sequence