Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04946 and MPMX19_04947 overlap by 4 nucleotides MPMX19_04947 and MPMX19_04948 are separated by 55 nucleotides MPMX19_04948 and MPMX19_04949 are separated by 146 nucleotides
MPMX19_04946: MPMX19_04946 - hypothetical protein, at 409,952 to 410,635
_04946
MPMX19_04947: MPMX19_04947 - hypothetical protein, at 410,632 to 411,201
_04947
MPMX19_04948: MPMX19_04948 - HTH-type transcriptional regulator GltR, at 411,257 to 412,204
_04948
MPMX19_04949: MPMX19_04949 - Leu/Ile/Val-binding protein, at 412,351 to 413,676
_04949
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 411.458 kb on + strand, within MPMX19_04948 at 411.459 kb on - strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 412.191 kb on + strand at 412.191 kb on + strand at 412.216 kb on + strand at 412.236 kb on + strand at 412.301 kb on - strand at 412.301 kb on - strand at 412.519 kb on + strand, within MPMX19_04949 at 412.519 kb on + strand, within MPMX19_04949 at 412.766 kb on - strand, within MPMX19_04949 at 413.156 kb on - strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 411,458 + MPMX19_04948 0.21 -1.3 411,459 - MPMX19_04948 0.21 -1.0 411,704 + MPMX19_04948 0.47 -1.5 411,704 + MPMX19_04948 0.47 -0.0 411,704 + MPMX19_04948 0.47 -0.6 411,704 + MPMX19_04948 0.47 -1.5 411,704 + MPMX19_04948 0.47 -1.3 412,191 + +0.5 412,191 + -1.3 412,216 + -0.7 412,236 + +1.0 412,301 - -1.3 412,301 - -1.6 412,519 + MPMX19_04949 0.13 -1.3 412,519 + MPMX19_04949 0.13 -1.4 412,766 - MPMX19_04949 0.31 -0.0 413,156 - MPMX19_04949 0.61 -0.2 413,188 + MPMX19_04949 0.63 -2.0 413,188 + MPMX19_04949 0.63 -2.0 413,188 + MPMX19_04949 0.63 +0.3 413,188 + MPMX19_04949 0.63 -1.3 413,188 + MPMX19_04949 0.63 -0.7 413,189 - MPMX19_04949 0.63 +0.5 413,189 - MPMX19_04949 0.63 +0.3 413,189 - MPMX19_04949 0.63 -1.1 413,189 - MPMX19_04949 0.63 +0.2 413,189 - MPMX19_04949 0.63 -1.0 413,189 - MPMX19_04949 0.63 -0.3
Or see this region's nucleotide sequence