Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04931

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04930 and MPMX19_04931 are separated by 121 nucleotidesMPMX19_04931 and MPMX19_04932 are separated by 271 nucleotidesMPMX19_04932 and MPMX19_04933 are separated by 249 nucleotides MPMX19_04930: MPMX19_04930 - Hydrogen peroxide-inducible genes activator, at 390,918 to 391,889 _04930 MPMX19_04931: MPMX19_04931 - Catalase, at 392,011 to 393,462 _04931 MPMX19_04932: MPMX19_04932 - hypothetical protein, at 393,734 to 394,195 _04932 MPMX19_04933: MPMX19_04933 - hypothetical protein, at 394,445 to 395,524 _04933 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1at 391.087 kb on + strand, within MPMX19_04930at 391.088 kb on - strand, within MPMX19_04930at 391.088 kb on - strand, within MPMX19_04930at 391.088 kb on - strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.538 kb on + strand, within MPMX19_04930at 391.538 kb on + strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.553 kb on - strand, within MPMX19_04930at 391.553 kb on - strand, within MPMX19_04930at 391.553 kb on - strand, within MPMX19_04930at 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.889 kb on + strandat 391.889 kb on + strandat 391.889 kb on + strandat 391.890 kb on - strandat 391.919 kb on - strandat 391.919 kb on - strandat 391.919 kb on - strandat 391.929 kb on + strandat 391.930 kb on - strandat 391.930 kb on - strandat 391.931 kb on + strandat 391.931 kb on + strandat 391.932 kb on - strandat 391.932 kb on - strandat 391.932 kb on - strandat 392.185 kb on + strand, within MPMX19_04931at 392.185 kb on + strand, within MPMX19_04931at 392.185 kb on + strand, within MPMX19_04931at 392.186 kb on - strand, within MPMX19_04931at 392.186 kb on - strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.353 kb on - strand, within MPMX19_04931at 392.353 kb on - strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.641 kb on + strand, within MPMX19_04931at 392.641 kb on + strand, within MPMX19_04931at 392.641 kb on + strand, within MPMX19_04931at 392.642 kb on - strand, within MPMX19_04931at 392.642 kb on - strand, within MPMX19_04931at 392.737 kb on + strand, within MPMX19_04931at 392.737 kb on + strand, within MPMX19_04931at 392.737 kb on + strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 393.013 kb on + strand, within MPMX19_04931at 393.013 kb on + strand, within MPMX19_04931at 393.013 kb on + strand, within MPMX19_04931at 393.014 kb on - strand, within MPMX19_04931at 393.014 kb on - strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.049 kb on + strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.050 kb on - strand, within MPMX19_04931at 393.097 kb on + strand, within MPMX19_04931at 393.097 kb on + strand, within MPMX19_04931at 393.097 kb on + strand, within MPMX19_04931at 393.097 kb on + strand, within MPMX19_04931at 393.098 kb on - strand, within MPMX19_04931at 393.098 kb on - strand, within MPMX19_04931at 393.098 kb on - strand, within MPMX19_04931at 393.151 kb on + strand, within MPMX19_04931at 393.151 kb on + strand, within MPMX19_04931at 393.151 kb on + strand, within MPMX19_04931at 393.151 kb on + strand, within MPMX19_04931at 393.151 kb on + strand, within MPMX19_04931at 393.152 kb on - strand, within MPMX19_04931at 393.235 kb on + strand, within MPMX19_04931at 393.235 kb on + strand, within MPMX19_04931at 393.235 kb on + strand, within MPMX19_04931at 393.235 kb on + strand, within MPMX19_04931at 393.235 kb on + strand, within MPMX19_04931at 393.236 kb on - strand, within MPMX19_04931at 393.236 kb on - strand, within MPMX19_04931at 393.262 kb on + strand, within MPMX19_04931at 393.262 kb on + strand, within MPMX19_04931at 393.262 kb on + strand, within MPMX19_04931at 393.262 kb on + strand, within MPMX19_04931at 393.263 kb on - strand, within MPMX19_04931at 393.263 kb on - strand, within MPMX19_04931at 393.263 kb on - strand, within MPMX19_04931at 393.263 kb on - strand, within MPMX19_04931at 393.263 kb on - strand, within MPMX19_04931at 393.407 kb on - strandat 393.407 kb on - strandat 393.407 kb on - strandat 393.407 kb on - strandat 393.407 kb on - strandat 393.407 kb on - strandat 393.697 kb on + strandat 393.697 kb on + strandat 393.697 kb on + strandat 393.697 kb on + strandat 393.698 kb on - strandat 394.006 kb on + strand, within MPMX19_04932at 394.007 kb on - strand, within MPMX19_04932at 394.314 kb on + strandat 394.314 kb on + strandat 394.375 kb on + strandat 394.375 kb on + strandat 394.376 kb on - strandat 394.405 kb on + strandat 394.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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391,087 + MPMX19_04930 0.17 -1.0
391,088 - MPMX19_04930 0.17 -0.0
391,088 - MPMX19_04930 0.17 +0.4
391,088 - MPMX19_04930 0.17 -0.1
391,157 + MPMX19_04930 0.25 +0.1
391,157 + MPMX19_04930 0.25 -0.7
391,157 + MPMX19_04930 0.25 -0.7
391,157 + MPMX19_04930 0.25 +1.0
391,157 + MPMX19_04930 0.25 +1.0
391,157 + MPMX19_04930 0.25 -0.3
391,157 + MPMX19_04930 0.25 -1.4
391,157 + MPMX19_04930 0.25 -1.2
391,157 + MPMX19_04930 0.25 +0.2
391,157 + MPMX19_04930 0.25 -1.8
391,158 - MPMX19_04930 0.25 +0.3
391,158 - MPMX19_04930 0.25 -0.2
391,158 - MPMX19_04930 0.25 +0.2
391,158 - MPMX19_04930 0.25 +0.1
391,158 - MPMX19_04930 0.25 -0.0
391,538 + MPMX19_04930 0.64 +1.2
391,538 + MPMX19_04930 0.64 -1.1
391,539 - MPMX19_04930 0.64 -0.3
391,539 - MPMX19_04930 0.64 +1.2
391,539 - MPMX19_04930 0.64 -0.3
391,539 - MPMX19_04930 0.64 -1.3
391,552 + MPMX19_04930 0.65 -0.1
391,552 + MPMX19_04930 0.65 -0.2
391,552 + MPMX19_04930 0.65 -1.1
391,552 + MPMX19_04930 0.65 -1.2
391,552 + MPMX19_04930 0.65 +0.4
391,552 + MPMX19_04930 0.65 -0.0
391,553 - MPMX19_04930 0.65 -1.5
391,553 - MPMX19_04930 0.65 -1.5
391,553 - MPMX19_04930 0.65 +0.1
391,840 + -2.2
391,840 + +0.1
391,840 + -0.2
391,840 + -0.6
391,840 + +0.5
391,840 + -0.7
391,840 + -0.1
391,840 + -0.0
391,840 + +0.8
391,840 + -1.2
391,840 + -1.0
391,840 + -1.9
391,840 + -1.5
391,840 + -0.7
391,840 + -1.0
391,840 + -0.6
391,840 + -0.5
391,840 + -2.0
391,841 - +0.1
391,841 - -0.8
391,841 - -0.3
391,841 - +0.5
391,841 - -0.2
391,841 - +0.6
391,841 - +0.2
391,841 - -0.8
391,841 - -1.6
391,841 - -0.5
391,841 - +0.5
391,841 - -0.2
391,841 - -0.5
391,841 - +0.8
391,841 - +0.3
391,841 - -2.8
391,841 - -0.9
391,841 - +0.1
391,841 - -1.0
391,841 - -0.0
391,841 - -0.9
391,841 - -0.0
391,889 + -0.3
391,889 + -0.7
391,889 + +1.1
391,890 - -0.6
391,919 - -1.0
391,919 - -1.6
391,919 - -0.2
391,929 + -1.6
391,930 - +0.5
391,930 - -2.2
391,931 + -1.9
391,931 + +0.4
391,932 - -0.0
391,932 - -0.2
391,932 - -1.8
392,185 + MPMX19_04931 0.12 +1.1
392,185 + MPMX19_04931 0.12 +0.4
392,185 + MPMX19_04931 0.12 +0.6
392,186 - MPMX19_04931 0.12 +1.0
392,186 - MPMX19_04931 0.12 -0.6
392,350 + MPMX19_04931 0.23 -0.4
392,350 + MPMX19_04931 0.23 -1.8
392,350 + MPMX19_04931 0.23 -1.8
392,350 + MPMX19_04931 0.23 -0.0
392,350 + MPMX19_04931 0.23 -0.5
392,350 + MPMX19_04931 0.23 -1.1
392,351 - MPMX19_04931 0.23 +0.4
392,351 - MPMX19_04931 0.23 -1.4
392,351 - MPMX19_04931 0.23 -0.2
392,351 - MPMX19_04931 0.23 -0.0
392,353 - MPMX19_04931 0.24 -0.2
392,353 - MPMX19_04931 0.24 -0.0
392,368 + MPMX19_04931 0.25 -0.2
392,368 + MPMX19_04931 0.25 +0.5
392,368 + MPMX19_04931 0.25 +0.6
392,368 + MPMX19_04931 0.25 +0.3
392,369 - MPMX19_04931 0.25 -0.8
392,369 - MPMX19_04931 0.25 -0.9
392,369 - MPMX19_04931 0.25 +0.3
392,369 - MPMX19_04931 0.25 -1.8
392,369 - MPMX19_04931 0.25 -0.0
392,369 - MPMX19_04931 0.25 -0.5
392,369 - MPMX19_04931 0.25 -0.3
392,369 - MPMX19_04931 0.25 +0.2
392,369 - MPMX19_04931 0.25 -0.0
392,641 + MPMX19_04931 0.43 -0.8
392,641 + MPMX19_04931 0.43 +0.2
392,641 + MPMX19_04931 0.43 +0.3
392,642 - MPMX19_04931 0.43 -0.9
392,642 - MPMX19_04931 0.43 -0.8
392,737 + MPMX19_04931 0.50 -3.1
392,737 + MPMX19_04931 0.50 -0.6
392,737 + MPMX19_04931 0.50 -0.2
392,738 - MPMX19_04931 0.50 -1.5
392,738 - MPMX19_04931 0.50 +0.9
392,738 - MPMX19_04931 0.50 -0.6
392,738 - MPMX19_04931 0.50 +0.1
393,013 + MPMX19_04931 0.69 -0.3
393,013 + MPMX19_04931 0.69 +1.2
393,013 + MPMX19_04931 0.69 -0.9
393,014 - MPMX19_04931 0.69 +0.7
393,014 - MPMX19_04931 0.69 +0.4
393,049 + MPMX19_04931 0.71 +0.2
393,049 + MPMX19_04931 0.71 -0.6
393,049 + MPMX19_04931 0.71 +0.6
393,049 + MPMX19_04931 0.71 -0.5
393,049 + MPMX19_04931 0.71 +0.5
393,049 + MPMX19_04931 0.71 +0.5
393,049 + MPMX19_04931 0.71 -0.3
393,049 + MPMX19_04931 0.71 -0.6
393,049 + MPMX19_04931 0.71 -0.6
393,050 - MPMX19_04931 0.72 -0.1
393,050 - MPMX19_04931 0.72 +0.5
393,050 - MPMX19_04931 0.72 +0.1
393,050 - MPMX19_04931 0.72 -1.9
393,050 - MPMX19_04931 0.72 +0.7
393,050 - MPMX19_04931 0.72 -0.0
393,050 - MPMX19_04931 0.72 -0.2
393,050 - MPMX19_04931 0.72 +0.3
393,050 - MPMX19_04931 0.72 -0.0
393,097 + MPMX19_04931 0.75 +0.8
393,097 + MPMX19_04931 0.75 +0.2
393,097 + MPMX19_04931 0.75 +1.5
393,097 + MPMX19_04931 0.75 -0.7
393,098 - MPMX19_04931 0.75 -0.0
393,098 - MPMX19_04931 0.75 +0.5
393,098 - MPMX19_04931 0.75 +1.3
393,151 + MPMX19_04931 0.79 +0.4
393,151 + MPMX19_04931 0.79 -2.0
393,151 + MPMX19_04931 0.79 -0.2
393,151 + MPMX19_04931 0.79 -0.1
393,151 + MPMX19_04931 0.79 -0.6
393,152 - MPMX19_04931 0.79 +0.2
393,235 + MPMX19_04931 0.84 -0.4
393,235 + MPMX19_04931 0.84 +0.6
393,235 + MPMX19_04931 0.84 +1.2
393,235 + MPMX19_04931 0.84 -2.2
393,235 + MPMX19_04931 0.84 +0.2
393,236 - MPMX19_04931 0.84 -0.3
393,236 - MPMX19_04931 0.84 +0.5
393,262 + MPMX19_04931 0.86 +0.5
393,262 + MPMX19_04931 0.86 +0.1
393,262 + MPMX19_04931 0.86 -0.5
393,262 + MPMX19_04931 0.86 -0.6
393,263 - MPMX19_04931 0.86 -1.2
393,263 - MPMX19_04931 0.86 +0.1
393,263 - MPMX19_04931 0.86 +0.3
393,263 - MPMX19_04931 0.86 -0.5
393,263 - MPMX19_04931 0.86 -0.9
393,407 - -0.6
393,407 - +0.2
393,407 - -0.5
393,407 - +0.7
393,407 - -2.9
393,407 - -2.1
393,697 + -0.9
393,697 + -1.9
393,697 + +0.4
393,697 + -0.0
393,698 - +0.8
394,006 + MPMX19_04932 0.59 +0.5
394,007 - MPMX19_04932 0.59 -0.7
394,314 + +0.7
394,314 + +1.0
394,375 + -1.6
394,375 + +0.3
394,376 - -0.5
394,405 + -0.5
394,405 + -0.9

Or see this region's nucleotide sequence