Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04910

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04908 and MPMX19_04909 are separated by 122 nucleotidesMPMX19_04909 and MPMX19_04910 are separated by 116 nucleotidesMPMX19_04910 and MPMX19_04911 are separated by 70 nucleotides MPMX19_04908: MPMX19_04908 - hypothetical protein, at 363,294 to 363,605 _04908 MPMX19_04909: MPMX19_04909 - hypothetical protein, at 363,728 to 364,207 _04909 MPMX19_04910: MPMX19_04910 - hypothetical protein, at 364,324 to 366,099 _04910 MPMX19_04911: MPMX19_04911 - hypothetical protein, at 366,170 to 368,194 _04911 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -1 0 1 2 3at 363.373 kb on + strand, within MPMX19_04908at 363.624 kb on + strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.188 kb on + strandat 364.189 kb on - strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.412 kb on + strandat 364.412 kb on + strandat 364.413 kb on - strandat 364.413 kb on - strandat 364.413 kb on - strandat 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.339 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 366.023 kb on + strandat 366.024 kb on - strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.080 kb on - strandat 366.118 kb on + strandat 366.118 kb on + strandat 366.118 kb on + strandat 366.119 kb on - strandat 366.689 kb on + strand, within MPMX19_04911at 366.690 kb on - strand, within MPMX19_04911at 366.690 kb on - strand, within MPMX19_04911

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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363,373 + MPMX19_04908 0.25 -0.1
363,624 + -1.1
363,625 - -0.8
363,625 - +0.0
363,625 - -0.2
363,625 - -1.0
363,625 - +0.2
363,625 - -0.5
363,987 + MPMX19_04909 0.54 +0.2
363,987 + MPMX19_04909 0.54 -1.4
363,987 + MPMX19_04909 0.54 -1.5
363,987 + MPMX19_04909 0.54 +0.2
363,988 - MPMX19_04909 0.54 +1.5
363,988 - MPMX19_04909 0.54 -0.1
363,988 - MPMX19_04909 0.54 +0.8
363,988 - MPMX19_04909 0.54 +0.9
364,005 + MPMX19_04909 0.58 -0.1
364,005 + MPMX19_04909 0.58 +0.2
364,005 + MPMX19_04909 0.58 -0.9
364,005 + MPMX19_04909 0.58 -0.6
364,005 + MPMX19_04909 0.58 -0.2
364,006 - MPMX19_04909 0.58 -0.3
364,006 - MPMX19_04909 0.58 -0.4
364,006 - MPMX19_04909 0.58 -0.6
364,188 + -0.7
364,189 - -0.8
364,246 + +0.5
364,246 + +1.0
364,246 + +0.5
364,246 + -1.1
364,246 + -0.1
364,246 + -1.5
364,247 - +0.9
364,247 - -0.6
364,247 - -0.2
364,247 - -1.4
364,247 - -0.9
364,247 - -1.3
364,247 - +0.2
364,412 + +0.3
364,412 + +1.8
364,413 - +2.8
364,413 - -0.2
364,413 - +0.1
364,781 + MPMX19_04910 0.26 -0.8
364,781 + MPMX19_04910 0.26 +0.8
364,781 + MPMX19_04910 0.26 +0.1
364,781 + MPMX19_04910 0.26 -1.5
364,782 - MPMX19_04910 0.26 -0.1
364,782 - MPMX19_04910 0.26 +0.3
364,782 - MPMX19_04910 0.26 -0.1
364,782 - MPMX19_04910 0.26 -1.5
365,330 + MPMX19_04910 0.57 -0.7
365,330 + MPMX19_04910 0.57 +2.9
365,330 + MPMX19_04910 0.57 +0.9
365,330 + MPMX19_04910 0.57 +0.9
365,330 + MPMX19_04910 0.57 -1.1
365,331 - MPMX19_04910 0.57 +1.2
365,331 - MPMX19_04910 0.57 +0.4
365,331 - MPMX19_04910 0.57 +0.8
365,331 - MPMX19_04910 0.57 +0.1
365,331 - MPMX19_04910 0.57 +0.1
365,331 - MPMX19_04910 0.57 -0.1
365,331 - MPMX19_04910 0.57 -0.3
365,331 - MPMX19_04910 0.57 -0.8
365,339 + MPMX19_04910 0.57 -1.3
365,453 + MPMX19_04910 0.64 -0.3
365,453 + MPMX19_04910 0.64 -0.5
365,453 + MPMX19_04910 0.64 +0.1
365,453 + MPMX19_04910 0.64 -0.6
365,454 - MPMX19_04910 0.64 -1.1
365,454 - MPMX19_04910 0.64 +0.9
365,454 - MPMX19_04910 0.64 -0.6
366,023 + +0.4
366,024 - +1.5
366,079 + -0.2
366,079 + -0.6
366,079 + -0.3
366,079 + -0.5
366,080 - +0.5
366,118 + +0.4
366,118 + +0.5
366,118 + -1.1
366,119 - +0.2
366,689 + MPMX19_04911 0.26 -0.2
366,690 - MPMX19_04911 0.26 -0.6
366,690 - MPMX19_04911 0.26 +1.5

Or see this region's nucleotide sequence