Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04856

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04854 and MPMX19_04855 are separated by 289 nucleotidesMPMX19_04855 and MPMX19_04856 are separated by 237 nucleotidesMPMX19_04856 and MPMX19_04857 are separated by 240 nucleotidesMPMX19_04857 and MPMX19_04858 are separated by 50 nucleotides MPMX19_04854: MPMX19_04854 - Hexuronate transporter, at 271,606 to 272,889 _04854 MPMX19_04855: MPMX19_04855 - hypothetical protein, at 273,179 to 273,349 _04855 MPMX19_04856: MPMX19_04856 - Phosphoglycolate phosphatase, at 273,587 to 274,285 _04856 MPMX19_04857: MPMX19_04857 - hypothetical protein, at 274,526 to 275,020 _04857 MPMX19_04858: MPMX19_04858 - hypothetical protein, at 275,071 to 293,739 _04858 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.632 kb on + strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.633 kb on - strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.704 kb on + strand, within MPMX19_04854at 272.705 kb on - strand, within MPMX19_04854at 272.705 kb on - strand, within MPMX19_04854at 272.705 kb on - strand, within MPMX19_04854at 272.705 kb on - strand, within MPMX19_04854at 272.762 kb on - strandat 272.974 kb on + strandat 272.975 kb on - strandat 272.975 kb on - strandat 272.975 kb on - strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.996 kb on + strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 272.997 kb on - strandat 273.037 kb on + strandat 273.048 kb on + strandat 273.048 kb on + strandat 273.048 kb on + strandat 273.049 kb on - strandat 273.567 kb on + strandat 273.567 kb on + strandat 273.583 kb on - strandat 273.583 kb on - strandat 273.654 kb on + strandat 273.696 kb on + strand, within MPMX19_04856at 273.846 kb on + strand, within MPMX19_04856at 273.846 kb on + strand, within MPMX19_04856at 273.846 kb on + strand, within MPMX19_04856at 273.846 kb on + strand, within MPMX19_04856at 273.847 kb on - strand, within MPMX19_04856at 273.847 kb on - strand, within MPMX19_04856at 273.847 kb on - strand, within MPMX19_04856at 274.032 kb on + strand, within MPMX19_04856at 274.032 kb on + strand, within MPMX19_04856at 274.033 kb on - strand, within MPMX19_04856at 274.033 kb on - strand, within MPMX19_04856at 274.033 kb on - strand, within MPMX19_04856at 274.215 kb on + strand, within MPMX19_04856at 274.215 kb on + strand, within MPMX19_04856at 274.216 kb on - strandat 274.216 kb on - strandat 274.216 kb on - strandat 274.216 kb on - strandat 274.386 kb on + strandat 274.429 kb on + strandat 274.429 kb on + strandat 274.463 kb on + strandat 274.463 kb on + strandat 274.463 kb on + strandat 274.463 kb on + strandat 274.463 kb on + strandat 274.463 kb on + strandat 274.463 kb on + strandat 274.464 kb on - strandat 274.464 kb on - strandat 274.610 kb on + strand, within MPMX19_04857at 274.610 kb on + strand, within MPMX19_04857at 274.611 kb on - strand, within MPMX19_04857at 274.665 kb on - strand, within MPMX19_04857at 274.665 kb on - strand, within MPMX19_04857at 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.186 kb on + strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strandat 275.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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272,632 + MPMX19_04854 0.80 -0.1
272,632 + MPMX19_04854 0.80 -0.5
272,632 + MPMX19_04854 0.80 -0.8
272,632 + MPMX19_04854 0.80 -1.3
272,632 + MPMX19_04854 0.80 -0.5
272,632 + MPMX19_04854 0.80 +1.5
272,632 + MPMX19_04854 0.80 +0.1
272,632 + MPMX19_04854 0.80 -1.6
272,632 + MPMX19_04854 0.80 -0.5
272,632 + MPMX19_04854 0.80 -0.7
272,632 + MPMX19_04854 0.80 -0.8
272,632 + MPMX19_04854 0.80 -1.1
272,633 - MPMX19_04854 0.80 +0.8
272,633 - MPMX19_04854 0.80 -0.1
272,633 - MPMX19_04854 0.80 -1.5
272,633 - MPMX19_04854 0.80 +1.5
272,633 - MPMX19_04854 0.80 +0.6
272,633 - MPMX19_04854 0.80 +0.1
272,633 - MPMX19_04854 0.80 -0.9
272,633 - MPMX19_04854 0.80 -1.1
272,633 - MPMX19_04854 0.80 -0.1
272,633 - MPMX19_04854 0.80 -1.6
272,633 - MPMX19_04854 0.80 -0.1
272,633 - MPMX19_04854 0.80 +0.9
272,633 - MPMX19_04854 0.80 +1.0
272,704 + MPMX19_04854 0.86 +0.9
272,704 + MPMX19_04854 0.86 -0.2
272,704 + MPMX19_04854 0.86 +1.0
272,704 + MPMX19_04854 0.86 -0.2
272,704 + MPMX19_04854 0.86 -1.0
272,704 + MPMX19_04854 0.86 +0.3
272,704 + MPMX19_04854 0.86 -0.1
272,705 - MPMX19_04854 0.86 -0.3
272,705 - MPMX19_04854 0.86 -0.3
272,705 - MPMX19_04854 0.86 -0.1
272,705 - MPMX19_04854 0.86 +0.1
272,762 - -0.1
272,974 + -0.5
272,975 - -1.9
272,975 - -1.5
272,975 - -1.6
272,996 + -2.1
272,996 + +0.5
272,996 + +0.2
272,996 + -1.9
272,996 + -1.0
272,996 + -1.0
272,996 + -1.2
272,996 + -0.8
272,996 + +0.7
272,996 + -1.0
272,996 + -0.1
272,996 + +0.5
272,996 + +0.2
272,996 + +0.3
272,996 + -0.9
272,997 - +0.5
272,997 - -1.2
272,997 - +0.1
272,997 - +1.0
272,997 - -1.6
272,997 - -2.5
272,997 - -0.1
272,997 - -2.0
272,997 - -0.5
273,037 + -0.7
273,048 + -0.4
273,048 + +0.4
273,048 + +0.7
273,049 - -0.5
273,567 + +1.0
273,567 + -1.0
273,583 - -0.1
273,583 - +0.5
273,654 + +1.0
273,696 + MPMX19_04856 0.16 +0.9
273,846 + MPMX19_04856 0.37 -1.6
273,846 + MPMX19_04856 0.37 -0.1
273,846 + MPMX19_04856 0.37 -0.8
273,846 + MPMX19_04856 0.37 +0.4
273,847 - MPMX19_04856 0.37 -1.1
273,847 - MPMX19_04856 0.37 -1.5
273,847 - MPMX19_04856 0.37 -1.5
274,032 + MPMX19_04856 0.64 +0.0
274,032 + MPMX19_04856 0.64 -2.3
274,033 - MPMX19_04856 0.64 -0.2
274,033 - MPMX19_04856 0.64 +1.2
274,033 - MPMX19_04856 0.64 -2.8
274,215 + MPMX19_04856 0.90 -0.9
274,215 + MPMX19_04856 0.90 -1.9
274,216 - -0.3
274,216 - -0.5
274,216 - +0.3
274,216 - +0.5
274,386 + -0.3
274,429 + -0.9
274,429 + -1.3
274,463 + -0.3
274,463 + -0.1
274,463 + +2.1
274,463 + +2.5
274,463 + -0.5
274,463 + +0.5
274,463 + +0.5
274,464 - +1.1
274,464 - -0.7
274,610 + MPMX19_04857 0.17 -0.2
274,610 + MPMX19_04857 0.17 -0.5
274,611 - MPMX19_04857 0.17 +0.1
274,665 - MPMX19_04857 0.28 +3.1
274,665 - MPMX19_04857 0.28 +0.9
275,186 + -0.5
275,186 + -0.9
275,186 + -0.1
275,186 + -0.3
275,186 + +0.7
275,186 + -0.8
275,186 + +0.1
275,186 + -0.3
275,186 + -0.6
275,186 + -0.1
275,187 - -0.1
275,187 - +0.7
275,187 - -0.4
275,187 - -0.3
275,187 - +1.2
275,187 - +0.3
275,187 - +0.8
275,187 - -1.9
275,187 - +0.5
275,187 - -0.1
275,187 - -1.0

Or see this region's nucleotide sequence