Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04785

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04784 and MPMX19_04785 overlap by 35 nucleotidesMPMX19_04785 and MPMX19_04786 overlap by 23 nucleotides MPMX19_04784: MPMX19_04784 - N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, at 180,488 to 182,758 _04784 MPMX19_04785: MPMX19_04785 - hypothetical protein, at 182,724 to 183,944 _04785 MPMX19_04786: MPMX19_04786 - Thymidylate kinase, at 183,922 to 185,208 _04786 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.111 kb on + strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.112 kb on - strand, within MPMX19_04784at 182.177 kb on + strand, within MPMX19_04784at 182.178 kb on - strand, within MPMX19_04784at 182.178 kb on - strand, within MPMX19_04784at 182.178 kb on - strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.261 kb on + strand, within MPMX19_04784at 182.262 kb on - strand, within MPMX19_04784at 182.262 kb on - strand, within MPMX19_04784at 182.262 kb on - strand, within MPMX19_04784at 182.693 kb on + strandat 182.694 kb on - strandat 182.694 kb on - strandat 182.694 kb on - strandat 183.052 kb on + strand, within MPMX19_04785at 183.052 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.191 kb on + strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.192 kb on - strand, within MPMX19_04785at 183.233 kb on + strand, within MPMX19_04785at 183.337 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.427 kb on + strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.428 kb on - strand, within MPMX19_04785at 183.478 kb on + strand, within MPMX19_04785at 183.479 kb on - strand, within MPMX19_04785at 183.479 kb on - strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.619 kb on + strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.620 kb on - strand, within MPMX19_04785at 183.757 kb on + strand, within MPMX19_04785at 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.927 kb on + strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.928 kb on - strandat 183.954 kb on + strandat 183.954 kb on + strandat 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.058 kb on + strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.059 kb on - strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.244 kb on + strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.245 kb on - strand, within MPMX19_04786at 184.313 kb on + strand, within MPMX19_04786at 184.411 kb on + strand, within MPMX19_04786at 184.412 kb on - strand, within MPMX19_04786at 184.765 kb on + strand, within MPMX19_04786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
182,111 + MPMX19_04784 0.71 -0.1
182,111 + MPMX19_04784 0.71 +1.5
182,111 + MPMX19_04784 0.71 +0.5
182,111 + MPMX19_04784 0.71 -0.2
182,111 + MPMX19_04784 0.71 -0.1
182,111 + MPMX19_04784 0.71 -0.1
182,111 + MPMX19_04784 0.71 +0.1
182,111 + MPMX19_04784 0.71 +0.5
182,111 + MPMX19_04784 0.71 -0.3
182,111 + MPMX19_04784 0.71 -0.3
182,111 + MPMX19_04784 0.71 -2.0
182,112 - MPMX19_04784 0.72 +0.2
182,112 - MPMX19_04784 0.72 +0.6
182,112 - MPMX19_04784 0.72 +0.9
182,112 - MPMX19_04784 0.72 -0.3
182,112 - MPMX19_04784 0.72 +0.1
182,112 - MPMX19_04784 0.72 +0.0
182,112 - MPMX19_04784 0.72 -1.3
182,112 - MPMX19_04784 0.72 +0.3
182,112 - MPMX19_04784 0.72 -2.0
182,177 + MPMX19_04784 0.74 -1.3
182,178 - MPMX19_04784 0.74 +1.5
182,178 - MPMX19_04784 0.74 -1.6
182,178 - MPMX19_04784 0.74 +0.8
182,261 + MPMX19_04784 0.78 -0.7
182,261 + MPMX19_04784 0.78 -0.5
182,261 + MPMX19_04784 0.78 -0.2
182,261 + MPMX19_04784 0.78 +0.6
182,261 + MPMX19_04784 0.78 +0.3
182,262 - MPMX19_04784 0.78 -0.1
182,262 - MPMX19_04784 0.78 -1.5
182,262 - MPMX19_04784 0.78 +0.1
182,693 + -1.2
182,694 - +0.4
182,694 - +1.2
182,694 - -1.1
183,052 + MPMX19_04785 0.27 +0.4
183,052 + MPMX19_04785 0.27 -2.4
183,191 + MPMX19_04785 0.38 -0.8
183,191 + MPMX19_04785 0.38 +1.2
183,191 + MPMX19_04785 0.38 -0.3
183,191 + MPMX19_04785 0.38 +0.1
183,191 + MPMX19_04785 0.38 -0.4
183,192 - MPMX19_04785 0.38 -0.0
183,192 - MPMX19_04785 0.38 -0.3
183,192 - MPMX19_04785 0.38 +1.1
183,233 + MPMX19_04785 0.42 -1.8
183,337 + MPMX19_04785 0.50 -0.8
183,427 + MPMX19_04785 0.58 -0.5
183,427 + MPMX19_04785 0.58 +1.1
183,427 + MPMX19_04785 0.58 -0.7
183,427 + MPMX19_04785 0.58 -0.1
183,427 + MPMX19_04785 0.58 -0.6
183,427 + MPMX19_04785 0.58 +0.4
183,428 - MPMX19_04785 0.58 -0.0
183,428 - MPMX19_04785 0.58 +0.5
183,428 - MPMX19_04785 0.58 -0.7
183,478 + MPMX19_04785 0.62 +1.0
183,479 - MPMX19_04785 0.62 -0.8
183,479 - MPMX19_04785 0.62 -0.6
183,619 + MPMX19_04785 0.73 -1.3
183,619 + MPMX19_04785 0.73 -1.2
183,619 + MPMX19_04785 0.73 -0.7
183,619 + MPMX19_04785 0.73 -0.1
183,619 + MPMX19_04785 0.73 +0.4
183,619 + MPMX19_04785 0.73 +0.1
183,619 + MPMX19_04785 0.73 +1.3
183,619 + MPMX19_04785 0.73 -0.4
183,620 - MPMX19_04785 0.73 -0.6
183,620 - MPMX19_04785 0.73 -0.4
183,620 - MPMX19_04785 0.73 -1.1
183,620 - MPMX19_04785 0.73 +1.3
183,620 - MPMX19_04785 0.73 +0.0
183,757 + MPMX19_04785 0.85 -0.2
183,927 + -0.2
183,927 + -1.8
183,927 + +0.5
183,927 + -0.7
183,927 + -0.4
183,927 + +0.1
183,927 + -1.5
183,927 + -0.2
183,927 + -2.0
183,927 + -1.3
183,928 - -2.4
183,928 - +0.8
183,928 - -0.5
183,928 - +0.2
183,928 - -2.4
183,928 - -0.1
183,928 - -1.7
183,928 - -0.9
183,928 - -0.5
183,928 - +0.7
183,928 - -0.9
183,928 - +0.1
183,954 + -0.1
183,954 + -0.6
184,058 + MPMX19_04786 0.11 -0.6
184,058 + MPMX19_04786 0.11 +0.9
184,058 + MPMX19_04786 0.11 -0.3
184,058 + MPMX19_04786 0.11 -1.1
184,058 + MPMX19_04786 0.11 +0.5
184,058 + MPMX19_04786 0.11 +0.0
184,059 - MPMX19_04786 0.11 +0.2
184,059 - MPMX19_04786 0.11 +0.0
184,059 - MPMX19_04786 0.11 -0.1
184,059 - MPMX19_04786 0.11 -0.5
184,059 - MPMX19_04786 0.11 +0.7
184,059 - MPMX19_04786 0.11 -0.6
184,059 - MPMX19_04786 0.11 -0.0
184,059 - MPMX19_04786 0.11 +0.7
184,059 - MPMX19_04786 0.11 -0.7
184,059 - MPMX19_04786 0.11 -1.7
184,059 - MPMX19_04786 0.11 -1.3
184,244 + MPMX19_04786 0.25 -1.6
184,244 + MPMX19_04786 0.25 +0.7
184,244 + MPMX19_04786 0.25 -1.4
184,244 + MPMX19_04786 0.25 -1.1
184,244 + MPMX19_04786 0.25 +0.3
184,244 + MPMX19_04786 0.25 +1.4
184,244 + MPMX19_04786 0.25 +0.2
184,244 + MPMX19_04786 0.25 +1.1
184,244 + MPMX19_04786 0.25 -1.0
184,245 - MPMX19_04786 0.25 +1.5
184,245 - MPMX19_04786 0.25 -0.8
184,245 - MPMX19_04786 0.25 +1.0
184,245 - MPMX19_04786 0.25 +0.5
184,245 - MPMX19_04786 0.25 -1.4
184,245 - MPMX19_04786 0.25 +0.5
184,245 - MPMX19_04786 0.25 +0.7
184,313 + MPMX19_04786 0.30 -0.4
184,411 + MPMX19_04786 0.38 -0.9
184,412 - MPMX19_04786 0.38 +0.8
184,765 + MPMX19_04786 0.66 +0.5

Or see this region's nucleotide sequence