Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04779

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04778 and MPMX19_04779 are separated by 304 nucleotidesMPMX19_04779 and MPMX19_04780 are separated by 497 nucleotides MPMX19_04778: MPMX19_04778 - hypothetical protein, at 173,359 to 174,396 _04778 MPMX19_04779: MPMX19_04779 - hypothetical protein, at 174,701 to 175,330 _04779 MPMX19_04780: MPMX19_04780 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 175,828 to 176,574 _04780 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.808 kb on - strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.087 kb on - strand, within MPMX19_04778at 174.486 kb on + strandat 174.486 kb on + strandat 174.487 kb on - strandat 174.487 kb on - strandat 174.541 kb on + strandat 174.592 kb on - strandat 174.648 kb on + strandat 174.649 kb on - strandat 175.099 kb on + strand, within MPMX19_04779at 175.099 kb on + strand, within MPMX19_04779at 175.099 kb on + strand, within MPMX19_04779at 175.239 kb on + strand, within MPMX19_04779at 175.399 kb on + strandat 175.400 kb on - strandat 175.547 kb on + strandat 175.547 kb on + strandat 175.548 kb on - strandat 175.548 kb on - strandat 175.548 kb on - strandat 175.548 kb on - strandat 175.629 kb on + strandat 175.629 kb on + strandat 175.629 kb on + strandat 175.629 kb on + strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.918 kb on + strand, within MPMX19_04780at 175.918 kb on + strand, within MPMX19_04780at 175.918 kb on + strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.943 kb on + strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.997 kb on + strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 176.132 kb on + strand, within MPMX19_04780at 176.132 kb on + strand, within MPMX19_04780at 176.133 kb on - strand, within MPMX19_04780at 176.133 kb on - strand, within MPMX19_04780at 176.267 kb on + strand, within MPMX19_04780

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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173,774 + MPMX19_04778 0.40 -0.4
173,774 + MPMX19_04778 0.40 +0.5
173,774 + MPMX19_04778 0.40 +0.3
173,774 + MPMX19_04778 0.40 +0.5
173,774 + MPMX19_04778 0.40 -3.4
173,774 + MPMX19_04778 0.40 -0.9
173,774 + MPMX19_04778 0.40 -0.8
173,774 + MPMX19_04778 0.40 -0.1
173,774 + MPMX19_04778 0.40 -1.1
173,775 - MPMX19_04778 0.40 +0.3
173,775 - MPMX19_04778 0.40 -0.6
173,775 - MPMX19_04778 0.40 -0.5
173,775 - MPMX19_04778 0.40 -1.7
173,808 - MPMX19_04778 0.43 -0.3
173,861 + MPMX19_04778 0.48 -1.0
173,861 + MPMX19_04778 0.48 -1.0
173,861 + MPMX19_04778 0.48 -0.8
173,861 + MPMX19_04778 0.48 -2.0
173,861 + MPMX19_04778 0.48 -0.5
173,861 + MPMX19_04778 0.48 +0.5
173,862 - MPMX19_04778 0.48 +0.0
173,862 - MPMX19_04778 0.48 -1.7
173,862 - MPMX19_04778 0.48 +0.2
173,862 - MPMX19_04778 0.48 -0.9
173,862 - MPMX19_04778 0.48 -0.0
173,862 - MPMX19_04778 0.48 +0.0
173,862 - MPMX19_04778 0.48 -0.2
173,862 - MPMX19_04778 0.48 +0.8
173,862 - MPMX19_04778 0.48 -1.5
173,862 - MPMX19_04778 0.48 -0.3
173,982 - MPMX19_04778 0.60 +1.2
173,982 - MPMX19_04778 0.60 +0.2
173,982 - MPMX19_04778 0.60 -0.1
174,006 - MPMX19_04778 0.62 +1.0
174,006 - MPMX19_04778 0.62 +0.3
174,006 - MPMX19_04778 0.62 -0.1
174,006 - MPMX19_04778 0.62 -1.3
174,006 - MPMX19_04778 0.62 +0.9
174,006 - MPMX19_04778 0.62 +0.1
174,006 - MPMX19_04778 0.62 +0.4
174,006 - MPMX19_04778 0.62 +0.9
174,006 - MPMX19_04778 0.62 -0.7
174,006 - MPMX19_04778 0.62 -0.5
174,018 + MPMX19_04778 0.63 -0.7
174,018 + MPMX19_04778 0.63 -1.3
174,018 + MPMX19_04778 0.63 +0.8
174,018 + MPMX19_04778 0.63 -1.5
174,018 + MPMX19_04778 0.63 +0.0
174,018 + MPMX19_04778 0.63 -0.2
174,018 + MPMX19_04778 0.63 -1.8
174,018 + MPMX19_04778 0.63 +0.3
174,018 + MPMX19_04778 0.63 -0.7
174,018 + MPMX19_04778 0.63 -0.8
174,018 + MPMX19_04778 0.63 -0.3
174,038 + MPMX19_04778 0.65 +0.4
174,038 + MPMX19_04778 0.65 -0.1
174,038 + MPMX19_04778 0.65 +0.1
174,038 + MPMX19_04778 0.65 +0.2
174,039 - MPMX19_04778 0.66 +0.5
174,039 - MPMX19_04778 0.66 +0.9
174,039 - MPMX19_04778 0.66 -0.7
174,039 - MPMX19_04778 0.66 +1.6
174,039 - MPMX19_04778 0.66 +0.2
174,039 - MPMX19_04778 0.66 -1.1
174,039 - MPMX19_04778 0.66 -0.3
174,039 - MPMX19_04778 0.66 -0.8
174,087 - MPMX19_04778 0.70 -0.5
174,486 + -0.5
174,486 + -1.3
174,487 - +0.0
174,487 - -1.0
174,541 + -0.2
174,592 - +0.0
174,648 + -0.7
174,649 - -0.1
175,099 + MPMX19_04779 0.63 +0.7
175,099 + MPMX19_04779 0.63 -1.4
175,099 + MPMX19_04779 0.63 -0.4
175,239 + MPMX19_04779 0.85 -0.8
175,399 + +0.3
175,400 - -0.5
175,547 + +0.7
175,547 + -0.2
175,548 - -0.3
175,548 - -0.2
175,548 - -0.8
175,548 - -1.1
175,629 + -0.9
175,629 + +0.4
175,629 + +0.4
175,629 + +0.9
175,630 - -0.2
175,630 - +2.3
175,630 - -3.0
175,630 - -1.5
175,630 - -1.2
175,630 - -0.4
175,630 - +1.3
175,630 - -1.3
175,630 - +1.0
175,630 - +1.4
175,630 - +0.5
175,918 + MPMX19_04780 0.12 +0.9
175,918 + MPMX19_04780 0.12 -0.0
175,918 + MPMX19_04780 0.12 +0.1
175,919 - MPMX19_04780 0.12 -0.6
175,919 - MPMX19_04780 0.12 -0.6
175,919 - MPMX19_04780 0.12 +0.1
175,919 - MPMX19_04780 0.12 -0.3
175,919 - MPMX19_04780 0.12 -0.8
175,943 + MPMX19_04780 0.15 -0.8
175,944 - MPMX19_04780 0.16 +0.1
175,944 - MPMX19_04780 0.16 -0.1
175,944 - MPMX19_04780 0.16 +0.3
175,973 + MPMX19_04780 0.19 -3.5
175,973 + MPMX19_04780 0.19 +1.2
175,973 + MPMX19_04780 0.19 +0.3
175,973 + MPMX19_04780 0.19 -0.9
175,973 + MPMX19_04780 0.19 -0.9
175,974 - MPMX19_04780 0.20 -0.7
175,974 - MPMX19_04780 0.20 +0.8
175,974 - MPMX19_04780 0.20 +0.5
175,996 + MPMX19_04780 0.22 -1.3
175,996 + MPMX19_04780 0.22 -1.5
175,996 + MPMX19_04780 0.22 -0.8
175,996 + MPMX19_04780 0.22 -0.4
175,996 + MPMX19_04780 0.22 +0.5
175,996 + MPMX19_04780 0.22 -1.3
175,996 + MPMX19_04780 0.22 +0.5
175,996 + MPMX19_04780 0.22 +0.2
175,997 + MPMX19_04780 0.23 +0.8
175,997 - MPMX19_04780 0.23 +0.7
175,997 - MPMX19_04780 0.23 +0.2
175,997 - MPMX19_04780 0.23 +0.5
175,997 - MPMX19_04780 0.23 -1.1
175,997 - MPMX19_04780 0.23 -0.2
176,132 + MPMX19_04780 0.41 +0.7
176,132 + MPMX19_04780 0.41 +0.1
176,133 - MPMX19_04780 0.41 -0.2
176,133 - MPMX19_04780 0.41 -1.2
176,267 + MPMX19_04780 0.59 +0.1

Or see this region's nucleotide sequence