Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04764

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04762 and MPMX19_04763 are separated by 56 nucleotidesMPMX19_04763 and MPMX19_04764 are separated by 28 nucleotidesMPMX19_04764 and MPMX19_04765 are separated by 222 nucleotides MPMX19_04762: MPMX19_04762 - 4-hydroxy-tetrahydrodipicolinate synthase, at 152,764 to 153,702 _04762 MPMX19_04763: MPMX19_04763 - Ribokinase, at 153,759 to 154,655 _04763 MPMX19_04764: MPMX19_04764 - Solute-binding protein, at 154,684 to 155,706 _04764 MPMX19_04765: MPMX19_04765 - HTH-type transcriptional repressor CytR, at 155,929 to 156,990 _04765 Position (kb) 154 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 154.892 kb on + strand, within MPMX19_04764at 154.893 kb on - strand, within MPMX19_04764at 154.893 kb on - strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.991 kb on + strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 154.992 kb on - strand, within MPMX19_04764at 155.015 kb on + strand, within MPMX19_04764at 155.015 kb on + strand, within MPMX19_04764at 155.015 kb on + strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.016 kb on - strand, within MPMX19_04764at 155.037 kb on + strand, within MPMX19_04764at 155.037 kb on + strand, within MPMX19_04764at 155.038 kb on - strand, within MPMX19_04764at 155.102 kb on + strand, within MPMX19_04764at 155.103 kb on - strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.162 kb on + strand, within MPMX19_04764at 155.163 kb on - strand, within MPMX19_04764at 155.706 kb on + strandat 155.706 kb on + strandat 155.875 kb on + strandat 155.875 kb on + strandat 155.880 kb on - strandat 155.913 kb on + strandat 155.913 kb on + strandat 155.914 kb on - strandat 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.406 kb on + strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.407 kb on - strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.418 kb on + strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765at 156.419 kb on - strand, within MPMX19_04765

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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154,892 + MPMX19_04764 0.20 +0.3
154,893 - MPMX19_04764 0.20 -0.2
154,893 - MPMX19_04764 0.20 -0.9
154,991 + MPMX19_04764 0.30 +0.2
154,991 + MPMX19_04764 0.30 +0.8
154,991 + MPMX19_04764 0.30 -0.8
154,991 + MPMX19_04764 0.30 -0.1
154,991 + MPMX19_04764 0.30 -1.6
154,991 + MPMX19_04764 0.30 +0.4
154,991 + MPMX19_04764 0.30 +0.3
154,991 + MPMX19_04764 0.30 -0.7
154,991 + MPMX19_04764 0.30 +0.3
154,991 + MPMX19_04764 0.30 +0.2
154,991 + MPMX19_04764 0.30 -0.5
154,991 + MPMX19_04764 0.30 -0.7
154,991 + MPMX19_04764 0.30 +0.7
154,991 + MPMX19_04764 0.30 -1.3
154,991 + MPMX19_04764 0.30 +2.7
154,992 - MPMX19_04764 0.30 -1.1
154,992 - MPMX19_04764 0.30 -1.7
154,992 - MPMX19_04764 0.30 +0.2
154,992 - MPMX19_04764 0.30 -0.3
154,992 - MPMX19_04764 0.30 -0.7
154,992 - MPMX19_04764 0.30 +0.2
154,992 - MPMX19_04764 0.30 -1.5
154,992 - MPMX19_04764 0.30 +0.3
154,992 - MPMX19_04764 0.30 +0.3
154,992 - MPMX19_04764 0.30 -0.3
155,015 + MPMX19_04764 0.32 -1.5
155,015 + MPMX19_04764 0.32 -0.8
155,015 + MPMX19_04764 0.32 -0.4
155,016 - MPMX19_04764 0.32 -0.9
155,016 - MPMX19_04764 0.32 -0.7
155,016 - MPMX19_04764 0.32 +0.8
155,016 - MPMX19_04764 0.32 -1.0
155,016 - MPMX19_04764 0.32 +1.4
155,037 + MPMX19_04764 0.35 -0.8
155,037 + MPMX19_04764 0.35 -0.5
155,038 - MPMX19_04764 0.35 -0.2
155,102 + MPMX19_04764 0.41 +0.5
155,103 - MPMX19_04764 0.41 -2.0
155,162 + MPMX19_04764 0.47 -0.1
155,162 + MPMX19_04764 0.47 -0.3
155,162 + MPMX19_04764 0.47 -1.1
155,162 + MPMX19_04764 0.47 -1.5
155,162 + MPMX19_04764 0.47 -2.1
155,163 - MPMX19_04764 0.47 -0.8
155,706 + -0.3
155,706 + +0.5
155,875 + -1.1
155,875 + -1.1
155,880 - -1.5
155,913 + +0.0
155,913 + -0.2
155,914 - -0.5
156,406 + MPMX19_04765 0.45 +1.1
156,406 + MPMX19_04765 0.45 +1.1
156,406 + MPMX19_04765 0.45 -0.8
156,406 + MPMX19_04765 0.45 -3.0
156,406 + MPMX19_04765 0.45 -0.1
156,406 + MPMX19_04765 0.45 -1.8
156,406 + MPMX19_04765 0.45 -1.1
156,406 + MPMX19_04765 0.45 -1.5
156,407 - MPMX19_04765 0.45 +0.3
156,407 - MPMX19_04765 0.45 +0.1
156,407 - MPMX19_04765 0.45 +0.8
156,407 - MPMX19_04765 0.45 -0.7
156,407 - MPMX19_04765 0.45 +1.5
156,418 + MPMX19_04765 0.46 -0.7
156,418 + MPMX19_04765 0.46 +1.2
156,418 + MPMX19_04765 0.46 +0.2
156,418 + MPMX19_04765 0.46 -2.0
156,418 + MPMX19_04765 0.46 +1.1
156,419 - MPMX19_04765 0.46 -0.3
156,419 - MPMX19_04765 0.46 +0.5
156,419 - MPMX19_04765 0.46 -0.1
156,419 - MPMX19_04765 0.46 -1.5

Or see this region's nucleotide sequence