Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04698

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04697 and MPMX19_04698 are separated by 51 nucleotidesMPMX19_04698 and MPMX19_04699 are separated by 21 nucleotides MPMX19_04697: MPMX19_04697 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 81,209 to 84,175 _04697 MPMX19_04698: MPMX19_04698 - hypothetical protein, at 84,227 to 84,724 _04698 MPMX19_04699: MPMX19_04699 - hypothetical protein, at 84,746 to 85,615 _04699 Position (kb) 84 85Strain fitness (log2 ratio) -2 -1 0 1at 83.262 kb on + strand, within MPMX19_04697at 83.304 kb on + strand, within MPMX19_04697at 83.304 kb on + strand, within MPMX19_04697at 83.304 kb on + strand, within MPMX19_04697at 83.304 kb on + strand, within MPMX19_04697at 83.304 kb on + strand, within MPMX19_04697at 83.305 kb on - strand, within MPMX19_04697at 83.305 kb on - strand, within MPMX19_04697at 83.305 kb on - strand, within MPMX19_04697at 83.305 kb on - strand, within MPMX19_04697at 83.305 kb on - strand, within MPMX19_04697at 83.436 kb on + strand, within MPMX19_04697at 83.436 kb on + strand, within MPMX19_04697at 83.436 kb on + strand, within MPMX19_04697at 83.436 kb on + strand, within MPMX19_04697at 83.437 kb on - strand, within MPMX19_04697at 83.437 kb on - strand, within MPMX19_04697at 83.437 kb on - strand, within MPMX19_04697at 83.437 kb on - strand, within MPMX19_04697at 83.547 kb on + strand, within MPMX19_04697at 83.548 kb on - strand, within MPMX19_04697at 83.548 kb on - strand, within MPMX19_04697at 83.548 kb on - strand, within MPMX19_04697at 83.548 kb on - strand, within MPMX19_04697at 83.548 kb on - strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.601 kb on + strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.602 kb on - strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.871 kb on + strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.881 kb on - strandat 83.881 kb on - strandat 83.881 kb on - strandat 84.024 kb on + strandat 84.025 kb on - strandat 84.183 kb on + strandat 84.919 kb on - strand, within MPMX19_04699at 84.919 kb on - strand, within MPMX19_04699at 84.919 kb on - strand, within MPMX19_04699at 84.919 kb on - strand, within MPMX19_04699at 85.192 kb on - strand, within MPMX19_04699at 85.192 kb on - strand, within MPMX19_04699at 85.341 kb on + strand, within MPMX19_04699at 85.473 kb on + strand, within MPMX19_04699at 85.474 kb on - strand, within MPMX19_04699

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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83,262 + MPMX19_04697 0.69 -0.3
83,304 + MPMX19_04697 0.71 +0.9
83,304 + MPMX19_04697 0.71 -0.0
83,304 + MPMX19_04697 0.71 -0.2
83,304 + MPMX19_04697 0.71 +0.6
83,304 + MPMX19_04697 0.71 +0.5
83,305 - MPMX19_04697 0.71 +0.2
83,305 - MPMX19_04697 0.71 +0.9
83,305 - MPMX19_04697 0.71 +1.0
83,305 - MPMX19_04697 0.71 -0.7
83,305 - MPMX19_04697 0.71 -0.1
83,436 + MPMX19_04697 0.75 -1.3
83,436 + MPMX19_04697 0.75 +0.7
83,436 + MPMX19_04697 0.75 +0.7
83,436 + MPMX19_04697 0.75 +1.0
83,437 - MPMX19_04697 0.75 +0.6
83,437 - MPMX19_04697 0.75 -1.0
83,437 - MPMX19_04697 0.75 -0.2
83,437 - MPMX19_04697 0.75 +0.8
83,547 + MPMX19_04697 0.79 -2.2
83,548 - MPMX19_04697 0.79 -0.1
83,548 - MPMX19_04697 0.79 -1.4
83,548 - MPMX19_04697 0.79 -0.7
83,548 - MPMX19_04697 0.79 -1.2
83,548 - MPMX19_04697 0.79 -0.0
83,601 + MPMX19_04697 0.81 +0.5
83,601 + MPMX19_04697 0.81 +0.0
83,601 + MPMX19_04697 0.81 +0.8
83,601 + MPMX19_04697 0.81 +0.5
83,601 + MPMX19_04697 0.81 -1.3
83,601 + MPMX19_04697 0.81 -0.4
83,601 + MPMX19_04697 0.81 -1.5
83,601 + MPMX19_04697 0.81 +0.1
83,601 + MPMX19_04697 0.81 +1.4
83,602 - MPMX19_04697 0.81 -0.5
83,602 - MPMX19_04697 0.81 +0.8
83,602 - MPMX19_04697 0.81 -0.5
83,602 - MPMX19_04697 0.81 -0.1
83,602 - MPMX19_04697 0.81 -0.3
83,602 - MPMX19_04697 0.81 -0.4
83,602 - MPMX19_04697 0.81 -0.6
83,868 + MPMX19_04697 0.90 -1.1
83,868 + MPMX19_04697 0.90 +0.0
83,868 + MPMX19_04697 0.90 -1.1
83,868 + MPMX19_04697 0.90 -0.6
83,868 + MPMX19_04697 0.90 +0.5
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 +0.2
83,868 + MPMX19_04697 0.90 -1.5
83,868 + MPMX19_04697 0.90 -0.6
83,868 + MPMX19_04697 0.90 -0.1
83,868 + MPMX19_04697 0.90 -0.1
83,868 + MPMX19_04697 0.90 +0.6
83,868 + MPMX19_04697 0.90 -1.1
83,868 + MPMX19_04697 0.90 -1.5
83,868 + MPMX19_04697 0.90 +0.0
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 +0.3
83,868 + MPMX19_04697 0.90 +1.0
83,868 + MPMX19_04697 0.90 -0.8
83,868 + MPMX19_04697 0.90 -0.2
83,868 + MPMX19_04697 0.90 -1.0
83,869 - MPMX19_04697 0.90 +0.3
83,869 - MPMX19_04697 0.90 -0.8
83,869 - MPMX19_04697 0.90 -0.1
83,869 - MPMX19_04697 0.90 +1.2
83,869 - MPMX19_04697 0.90 -0.7
83,869 - MPMX19_04697 0.90 -0.2
83,869 - MPMX19_04697 0.90 -1.0
83,869 - MPMX19_04697 0.90 -1.2
83,869 - MPMX19_04697 0.90 -0.5
83,869 - MPMX19_04697 0.90 -0.5
83,869 - MPMX19_04697 0.90 -0.1
83,869 - MPMX19_04697 0.90 +0.7
83,869 - MPMX19_04697 0.90 +0.9
83,869 - MPMX19_04697 0.90 -1.3
83,869 - MPMX19_04697 0.90 -0.1
83,869 - MPMX19_04697 0.90 -0.5
83,869 - MPMX19_04697 0.90 -0.1
83,869 - MPMX19_04697 0.90 +0.4
83,869 - MPMX19_04697 0.90 -1.4
83,869 - MPMX19_04697 0.90 +0.1
83,869 - MPMX19_04697 0.90 -1.1
83,869 - MPMX19_04697 0.90 +0.1
83,869 - MPMX19_04697 0.90 +1.7
83,869 - MPMX19_04697 0.90 +0.2
83,869 - MPMX19_04697 0.90 +1.0
83,871 + MPMX19_04697 0.90 +0.6
83,872 - MPMX19_04697 0.90 +0.5
83,872 - MPMX19_04697 0.90 +0.2
83,872 - MPMX19_04697 0.90 -0.1
83,872 - MPMX19_04697 0.90 +0.2
83,881 - -0.8
83,881 - -2.0
83,881 - +0.3
84,024 + +0.4
84,025 - -1.0
84,183 + -2.0
84,919 - MPMX19_04699 0.20 +0.9
84,919 - MPMX19_04699 0.20 -1.0
84,919 - MPMX19_04699 0.20 -0.5
84,919 - MPMX19_04699 0.20 -1.0
85,192 - MPMX19_04699 0.51 -0.1
85,192 - MPMX19_04699 0.51 -0.3
85,341 + MPMX19_04699 0.68 -1.9
85,473 + MPMX19_04699 0.84 -0.4
85,474 - MPMX19_04699 0.84 -1.8

Or see this region's nucleotide sequence