Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04680 and MPMX19_04681 are separated by 6 nucleotides MPMX19_04681 and MPMX19_04682 are separated by 26 nucleotides MPMX19_04682 and MPMX19_04683 overlap by 4 nucleotides
MPMX19_04680: MPMX19_04680 - Inner membrane ABC transporter permease protein YdcV, at 66,188 to 67,024
_04680
MPMX19_04681: MPMX19_04681 - 5-hydroxyisourate hydrolase, at 67,031 to 67,384
_04681
MPMX19_04682: MPMX19_04682 - hypothetical protein, at 67,411 to 68,607
_04682
MPMX19_04683: MPMX19_04683 - Acylamidase, at 68,604 to 70,010
_04683
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 66.756 kb on - strand, within MPMX19_04680 at 67.158 kb on + strand, within MPMX19_04681 at 67.158 kb on + strand, within MPMX19_04681 at 67.158 kb on + strand, within MPMX19_04681 at 67.159 kb on - strand, within MPMX19_04681 at 67.159 kb on - strand, within MPMX19_04681 at 67.615 kb on + strand, within MPMX19_04682 at 67.616 kb on - strand, within MPMX19_04682 at 67.987 kb on + strand, within MPMX19_04682 at 68.095 kb on + strand, within MPMX19_04682 at 68.096 kb on - strand, within MPMX19_04682 at 68.096 kb on - strand, within MPMX19_04682 at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 69.210 kb on + strand, within MPMX19_04683 at 69.387 kb on + strand, within MPMX19_04683 at 69.567 kb on + strand, within MPMX19_04683 at 69.567 kb on + strand, within MPMX19_04683 at 69.568 kb on - strand, within MPMX19_04683 at 69.568 kb on - strand, within MPMX19_04683
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 66,756 - MPMX19_04680 0.68 -0.6 67,158 + MPMX19_04681 0.36 -0.3 67,158 + MPMX19_04681 0.36 +0.1 67,158 + MPMX19_04681 0.36 -2.1 67,159 - MPMX19_04681 0.36 -1.1 67,159 - MPMX19_04681 0.36 +0.8 67,615 + MPMX19_04682 0.17 +0.2 67,616 - MPMX19_04682 0.17 -0.7 67,987 + MPMX19_04682 0.48 -1.7 68,095 + MPMX19_04682 0.57 -0.1 68,096 - MPMX19_04682 0.57 -0.1 68,096 - MPMX19_04682 0.57 -1.5 68,545 + -0.8 68,545 + +0.8 68,545 + +1.1 68,545 + -0.9 68,545 + -0.3 68,546 - -0.4 68,546 - +0.2 68,546 - +0.3 68,546 - +0.7 68,546 - -1.3 69,210 + MPMX19_04683 0.43 -0.7 69,387 + MPMX19_04683 0.56 -1.5 69,567 + MPMX19_04683 0.68 +0.3 69,567 + MPMX19_04683 0.68 +0.6 69,568 - MPMX19_04683 0.69 -0.5 69,568 - MPMX19_04683 0.69 +0.3
Or see this region's nucleotide sequence