Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04662

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04660 and MPMX19_04661 overlap by 14 nucleotidesMPMX19_04661 and MPMX19_04662 overlap by 4 nucleotidesMPMX19_04662 and MPMX19_04663 are separated by 107 nucleotides MPMX19_04660: MPMX19_04660 - Lipopolysaccharide export system ATP-binding protein LptB, at 47,061 to 47,807 _04660 MPMX19_04661: MPMX19_04661 - hypothetical protein, at 47,794 to 48,792 _04661 MPMX19_04662: MPMX19_04662 - High-affinity branched-chain amino acid transport system permease protein LivH, at 48,789 to 49,661 _04662 MPMX19_04663: MPMX19_04663 - hypothetical protein, at 49,769 to 51,013 _04663 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.858 kb on - strandat 48.080 kb on + strand, within MPMX19_04661at 48.080 kb on + strand, within MPMX19_04661at 48.081 kb on - strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.101 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.110 kb on + strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.111 kb on - strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.119 kb on + strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.120 kb on - strand, within MPMX19_04661at 48.314 kb on + strand, within MPMX19_04661at 48.314 kb on + strand, within MPMX19_04661at 48.314 kb on + strand, within MPMX19_04661at 48.315 kb on - strand, within MPMX19_04661at 48.315 kb on - strand, within MPMX19_04661at 48.315 kb on - strand, within MPMX19_04661at 48.458 kb on + strand, within MPMX19_04661at 48.459 kb on - strand, within MPMX19_04661at 48.459 kb on - strand, within MPMX19_04661at 48.459 kb on - strand, within MPMX19_04661at 48.564 kb on - strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.590 kb on + strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 48.591 kb on - strand, within MPMX19_04661at 49.018 kb on + strand, within MPMX19_04662at 49.018 kb on + strand, within MPMX19_04662at 49.018 kb on + strand, within MPMX19_04662at 49.018 kb on + strand, within MPMX19_04662at 49.018 kb on + strand, within MPMX19_04662at 49.018 kb on + strand, within MPMX19_04662at 49.019 kb on - strand, within MPMX19_04662at 49.019 kb on - strand, within MPMX19_04662at 49.019 kb on - strand, within MPMX19_04662at 49.019 kb on - strand, within MPMX19_04662at 49.019 kb on - strand, within MPMX19_04662at 49.019 kb on - strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.087 kb on + strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.088 kb on - strand, within MPMX19_04662at 49.237 kb on + strand, within MPMX19_04662at 49.237 kb on + strand, within MPMX19_04662at 49.238 kb on - strand, within MPMX19_04662at 49.238 kb on - strand, within MPMX19_04662at 49.238 kb on - strand, within MPMX19_04662at 49.280 kb on - strand, within MPMX19_04662at 49.280 kb on - strand, within MPMX19_04662at 49.280 kb on - strand, within MPMX19_04662at 49.280 kb on - strand, within MPMX19_04662at 49.424 kb on - strand, within MPMX19_04662at 49.468 kb on + strand, within MPMX19_04662at 49.468 kb on + strand, within MPMX19_04662at 49.468 kb on + strand, within MPMX19_04662at 49.468 kb on + strand, within MPMX19_04662at 49.567 kb on + strand, within MPMX19_04662at 49.567 kb on + strand, within MPMX19_04662at 49.567 kb on + strand, within MPMX19_04662at 49.567 kb on + strand, within MPMX19_04662at 49.568 kb on - strand, within MPMX19_04662at 49.568 kb on - strand, within MPMX19_04662at 49.600 kb on + strandat 49.600 kb on + strandat 49.600 kb on + strandat 49.600 kb on + strandat 49.601 kb on - strandat 49.601 kb on - strandat 49.601 kb on - strandat 49.601 kb on - strandat 49.601 kb on - strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.657 kb on + strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.658 kb on - strandat 49.912 kb on + strand, within MPMX19_04663at 49.912 kb on + strand, within MPMX19_04663at 49.912 kb on + strand, within MPMX19_04663at 49.912 kb on + strand, within MPMX19_04663at 49.912 kb on + strand, within MPMX19_04663at 49.912 kb on + strand, within MPMX19_04663at 49.913 kb on - strand, within MPMX19_04663at 49.913 kb on - strand, within MPMX19_04663at 50.013 kb on + strand, within MPMX19_04663at 50.013 kb on + strand, within MPMX19_04663at 50.014 kb on - strand, within MPMX19_04663at 50.014 kb on - strand, within MPMX19_04663at 50.014 kb on - strand, within MPMX19_04663at 50.014 kb on - strand, within MPMX19_04663at 50.031 kb on + strand, within MPMX19_04663at 50.031 kb on + strand, within MPMX19_04663at 50.032 kb on - strand, within MPMX19_04663at 50.032 kb on - strand, within MPMX19_04663at 50.032 kb on - strand, within MPMX19_04663at 50.032 kb on - strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.190 kb on + strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.191 kb on - strand, within MPMX19_04663at 50.253 kb on + strand, within MPMX19_04663at 50.254 kb on - strand, within MPMX19_04663at 50.256 kb on + strand, within MPMX19_04663at 50.256 kb on + strand, within MPMX19_04663at 50.256 kb on + strand, within MPMX19_04663at 50.256 kb on + strand, within MPMX19_04663at 50.256 kb on + strand, within MPMX19_04663at 50.256 kb on + strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.257 kb on - strand, within MPMX19_04663at 50.589 kb on + strand, within MPMX19_04663at 50.589 kb on + strand, within MPMX19_04663at 50.590 kb on - strand, within MPMX19_04663at 50.590 kb on - strand, within MPMX19_04663at 50.601 kb on + strand, within MPMX19_04663

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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47,858 - -0.8
48,080 + MPMX19_04661 0.29 -0.3
48,080 + MPMX19_04661 0.29 +0.1
48,081 - MPMX19_04661 0.29 +1.0
48,101 + MPMX19_04661 0.31 -1.1
48,101 + MPMX19_04661 0.31 +1.1
48,101 + MPMX19_04661 0.31 +0.1
48,101 + MPMX19_04661 0.31 -0.7
48,101 + MPMX19_04661 0.31 -0.8
48,110 + MPMX19_04661 0.32 -0.3
48,110 + MPMX19_04661 0.32 +0.5
48,110 + MPMX19_04661 0.32 -0.1
48,110 + MPMX19_04661 0.32 +0.3
48,110 + MPMX19_04661 0.32 -0.4
48,110 + MPMX19_04661 0.32 +0.4
48,110 + MPMX19_04661 0.32 +0.0
48,110 + MPMX19_04661 0.32 +1.5
48,111 - MPMX19_04661 0.32 +0.3
48,111 - MPMX19_04661 0.32 -1.3
48,111 - MPMX19_04661 0.32 -0.2
48,111 - MPMX19_04661 0.32 -1.8
48,111 - MPMX19_04661 0.32 +1.2
48,111 - MPMX19_04661 0.32 +0.2
48,119 + MPMX19_04661 0.33 +1.0
48,119 + MPMX19_04661 0.33 +1.7
48,119 + MPMX19_04661 0.33 -0.7
48,119 + MPMX19_04661 0.33 +0.4
48,119 + MPMX19_04661 0.33 -0.5
48,119 + MPMX19_04661 0.33 +0.4
48,119 + MPMX19_04661 0.33 -0.3
48,120 - MPMX19_04661 0.33 +0.5
48,120 - MPMX19_04661 0.33 +0.6
48,120 - MPMX19_04661 0.33 +1.0
48,120 - MPMX19_04661 0.33 +0.1
48,314 + MPMX19_04661 0.52 -0.1
48,314 + MPMX19_04661 0.52 +0.0
48,314 + MPMX19_04661 0.52 -0.8
48,315 - MPMX19_04661 0.52 -1.3
48,315 - MPMX19_04661 0.52 -1.0
48,315 - MPMX19_04661 0.52 -0.3
48,458 + MPMX19_04661 0.66 +0.4
48,459 - MPMX19_04661 0.67 -0.6
48,459 - MPMX19_04661 0.67 +0.6
48,459 - MPMX19_04661 0.67 -0.3
48,564 - MPMX19_04661 0.77 +0.6
48,590 + MPMX19_04661 0.80 +0.1
48,590 + MPMX19_04661 0.80 -0.6
48,590 + MPMX19_04661 0.80 -1.3
48,590 + MPMX19_04661 0.80 -1.8
48,591 - MPMX19_04661 0.80 +0.2
48,591 - MPMX19_04661 0.80 -0.9
48,591 - MPMX19_04661 0.80 -0.1
48,591 - MPMX19_04661 0.80 -0.1
48,591 - MPMX19_04661 0.80 +1.8
48,591 - MPMX19_04661 0.80 +0.6
48,591 - MPMX19_04661 0.80 -0.8
48,591 - MPMX19_04661 0.80 -0.1
48,591 - MPMX19_04661 0.80 -0.5
48,591 - MPMX19_04661 0.80 +1.3
48,591 - MPMX19_04661 0.80 +0.2
48,591 - MPMX19_04661 0.80 -0.3
49,018 + MPMX19_04662 0.26 +0.3
49,018 + MPMX19_04662 0.26 +0.9
49,018 + MPMX19_04662 0.26 +0.2
49,018 + MPMX19_04662 0.26 +1.2
49,018 + MPMX19_04662 0.26 +0.8
49,018 + MPMX19_04662 0.26 -0.6
49,019 - MPMX19_04662 0.26 +0.9
49,019 - MPMX19_04662 0.26 +0.2
49,019 - MPMX19_04662 0.26 +0.4
49,019 - MPMX19_04662 0.26 -0.2
49,019 - MPMX19_04662 0.26 -1.0
49,019 - MPMX19_04662 0.26 -0.4
49,087 + MPMX19_04662 0.34 +0.6
49,087 + MPMX19_04662 0.34 +0.3
49,087 + MPMX19_04662 0.34 -0.5
49,087 + MPMX19_04662 0.34 -1.1
49,087 + MPMX19_04662 0.34 +1.2
49,087 + MPMX19_04662 0.34 +0.1
49,087 + MPMX19_04662 0.34 -0.7
49,087 + MPMX19_04662 0.34 -0.3
49,088 - MPMX19_04662 0.34 -0.9
49,088 - MPMX19_04662 0.34 -0.3
49,088 - MPMX19_04662 0.34 -1.6
49,088 - MPMX19_04662 0.34 -0.2
49,088 - MPMX19_04662 0.34 -0.7
49,088 - MPMX19_04662 0.34 -0.1
49,088 - MPMX19_04662 0.34 -0.4
49,237 + MPMX19_04662 0.51 +1.0
49,237 + MPMX19_04662 0.51 -0.1
49,238 - MPMX19_04662 0.51 -0.9
49,238 - MPMX19_04662 0.51 -0.6
49,238 - MPMX19_04662 0.51 +0.7
49,280 - MPMX19_04662 0.56 +0.8
49,280 - MPMX19_04662 0.56 +0.3
49,280 - MPMX19_04662 0.56 +0.2
49,280 - MPMX19_04662 0.56 -1.7
49,424 - MPMX19_04662 0.73 +0.0
49,468 + MPMX19_04662 0.78 +0.1
49,468 + MPMX19_04662 0.78 +1.3
49,468 + MPMX19_04662 0.78 -0.4
49,468 + MPMX19_04662 0.78 +1.8
49,567 + MPMX19_04662 0.89 -0.1
49,567 + MPMX19_04662 0.89 -1.2
49,567 + MPMX19_04662 0.89 -0.5
49,567 + MPMX19_04662 0.89 +0.3
49,568 - MPMX19_04662 0.89 +0.1
49,568 - MPMX19_04662 0.89 -2.4
49,600 + +0.1
49,600 + -0.1
49,600 + -1.7
49,600 + -2.0
49,601 - +0.0
49,601 - +0.3
49,601 - +1.3
49,601 - -1.1
49,601 - -0.1
49,657 + +1.5
49,657 + -1.1
49,657 + -2.0
49,657 + +1.9
49,657 + -1.8
49,657 + -0.8
49,657 + +0.9
49,657 + -0.3
49,657 + -1.5
49,657 + -0.1
49,657 + -0.5
49,657 + +0.2
49,657 + -0.2
49,657 + -1.2
49,657 + -0.9
49,657 + +0.0
49,657 + -1.4
49,657 + +0.0
49,657 + -0.7
49,658 - -0.4
49,658 - +1.2
49,658 - +0.6
49,658 - +0.2
49,658 - +1.2
49,658 - -0.4
49,658 - +0.0
49,658 - -1.1
49,658 - +0.8
49,658 - -0.2
49,658 - -0.5
49,658 - +0.5
49,658 - -0.7
49,658 - +0.0
49,658 - +0.2
49,658 - -1.0
49,658 - -0.7
49,658 - -1.3
49,658 - -0.1
49,912 + MPMX19_04663 0.11 +0.9
49,912 + MPMX19_04663 0.11 +0.5
49,912 + MPMX19_04663 0.11 +0.5
49,912 + MPMX19_04663 0.11 +0.0
49,912 + MPMX19_04663 0.11 -0.5
49,912 + MPMX19_04663 0.11 -0.8
49,913 - MPMX19_04663 0.12 -0.9
49,913 - MPMX19_04663 0.12 -0.2
50,013 + MPMX19_04663 0.20 +0.7
50,013 + MPMX19_04663 0.20 -1.0
50,014 - MPMX19_04663 0.20 -1.8
50,014 - MPMX19_04663 0.20 -0.5
50,014 - MPMX19_04663 0.20 -0.2
50,014 - MPMX19_04663 0.20 -0.5
50,031 + MPMX19_04663 0.21 -0.0
50,031 + MPMX19_04663 0.21 -0.5
50,032 - MPMX19_04663 0.21 +0.2
50,032 - MPMX19_04663 0.21 -1.1
50,032 - MPMX19_04663 0.21 +0.6
50,032 - MPMX19_04663 0.21 +0.6
50,190 + MPMX19_04663 0.34 +0.4
50,190 + MPMX19_04663 0.34 +0.4
50,190 + MPMX19_04663 0.34 +0.3
50,190 + MPMX19_04663 0.34 +0.7
50,190 + MPMX19_04663 0.34 +1.5
50,190 + MPMX19_04663 0.34 -0.2
50,190 + MPMX19_04663 0.34 +0.1
50,190 + MPMX19_04663 0.34 +0.1
50,190 + MPMX19_04663 0.34 +0.6
50,191 - MPMX19_04663 0.34 +0.2
50,191 - MPMX19_04663 0.34 -0.0
50,191 - MPMX19_04663 0.34 +0.6
50,191 - MPMX19_04663 0.34 -1.1
50,191 - MPMX19_04663 0.34 +0.9
50,191 - MPMX19_04663 0.34 +0.0
50,191 - MPMX19_04663 0.34 -0.2
50,191 - MPMX19_04663 0.34 +0.3
50,253 + MPMX19_04663 0.39 +0.5
50,254 - MPMX19_04663 0.39 +0.5
50,256 + MPMX19_04663 0.39 +0.5
50,256 + MPMX19_04663 0.39 +0.9
50,256 + MPMX19_04663 0.39 +0.8
50,256 + MPMX19_04663 0.39 +0.6
50,256 + MPMX19_04663 0.39 +0.4
50,256 + MPMX19_04663 0.39 -0.4
50,257 - MPMX19_04663 0.39 -1.7
50,257 - MPMX19_04663 0.39 +0.1
50,257 - MPMX19_04663 0.39 +0.0
50,257 - MPMX19_04663 0.39 -1.0
50,257 - MPMX19_04663 0.39 -0.3
50,257 - MPMX19_04663 0.39 -1.4
50,257 - MPMX19_04663 0.39 -1.1
50,257 - MPMX19_04663 0.39 -1.2
50,257 - MPMX19_04663 0.39 +0.2
50,589 + MPMX19_04663 0.66 +0.3
50,589 + MPMX19_04663 0.66 -1.2
50,590 - MPMX19_04663 0.66 -2.1
50,590 - MPMX19_04663 0.66 +1.8
50,601 + MPMX19_04663 0.67 -0.2

Or see this region's nucleotide sequence