Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04641

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM, start OD=0.1
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22,279	+			-1.2
22,279	+			-1.5
22,279	+			+0.8
22,280	-			+0.3
22,411	+	MPMX19_04640	0.14	-0.8
22,411	+	MPMX19_04640	0.14	-0.3
22,411	+	MPMX19_04640	0.14	+0.3
22,412	-	MPMX19_04640	0.14	-0.1
22,412	-	MPMX19_04640	0.14	-2.3
22,470	+	MPMX19_04640	0.21	-0.6
22,470	+	MPMX19_04640	0.21	-1.6
22,470	+	MPMX19_04640	0.21	-0.5
22,471	-	MPMX19_04640	0.21	+0.7
22,710	+	MPMX19_04640	0.51	-1.0
22,711	-	MPMX19_04640	0.51	+1.0
22,711	-	MPMX19_04640	0.51	-0.7
22,803	+	MPMX19_04640	0.62	+0.3
22,803	+	MPMX19_04640	0.62	+0.3
22,803	+	MPMX19_04640	0.62	+0.1
22,804	-	MPMX19_04640	0.62	+0.9
22,804	-	MPMX19_04640	0.62	-0.5
22,890	+	MPMX19_04640	0.73	-0.0
23,082	+			-0.2
23,082	+			-0.1
23,082	+			-0.6
23,083	-			+1.1
23,083	-			-0.7
23,083	-			-1.7
23,106	+			+0.0
23,221	-			-0.3
23,221	-			+0.4
23,221	-			+0.8
23,425	-	MPMX19_04641	0.13	+1.0
23,439	+	MPMX19_04641	0.14	-1.1
23,440	-	MPMX19_04641	0.14	-0.7
23,958	+	MPMX19_04641	0.39	-1.0
23,958	+	MPMX19_04641	0.39	+1.3
23,959	-	MPMX19_04641	0.39	-1.2
23,959	-	MPMX19_04641	0.39	+0.3
23,967	+	MPMX19_04641	0.40	-0.4
23,967	+	MPMX19_04641	0.40	-0.7
23,967	+	MPMX19_04641	0.40	+0.2
23,967	+	MPMX19_04641	0.40	-0.9
23,967	+	MPMX19_04641	0.40	-0.1
23,967	+	MPMX19_04641	0.40	-1.0
23,967	+	MPMX19_04641	0.40	-0.1
23,967	+	MPMX19_04641	0.40	-0.7
23,967	+	MPMX19_04641	0.40	+0.6
23,967	+	MPMX19_04641	0.40	+0.3
23,967	+	MPMX19_04641	0.40	+0.2
23,967	+	MPMX19_04641	0.40	+0.1
23,968	-	MPMX19_04641	0.40	-1.0
23,968	-	MPMX19_04641	0.40	+1.1
23,968	-	MPMX19_04641	0.40	-1.1
23,968	-	MPMX19_04641	0.40	+0.1
23,968	-	MPMX19_04641	0.40	-0.4
23,968	-	MPMX19_04641	0.40	-1.1
23,968	-	MPMX19_04641	0.40	-0.4
23,968	-	MPMX19_04641	0.40	+0.6
23,997	+	MPMX19_04641	0.41	-0.1
23,997	+	MPMX19_04641	0.41	-1.8
23,998	-	MPMX19_04641	0.41	+0.0
23,998	-	MPMX19_04641	0.41	-0.0
23,998	-	MPMX19_04641	0.41	-0.2
23,998	-	MPMX19_04641	0.41	+2.1
23,998	-	MPMX19_04641	0.41	+0.5
23,998	-	MPMX19_04641	0.41	-1.4
24,054	+	MPMX19_04641	0.44	-0.0
24,054	+	MPMX19_04641	0.44	-0.8
24,055	-	MPMX19_04641	0.44	-0.7
24,055	-	MPMX19_04641	0.44	+1.1
24,055	-	MPMX19_04641	0.44	-0.8
24,126	+	MPMX19_04641	0.47	-0.5
24,126	+	MPMX19_04641	0.47	-0.1
24,126	+	MPMX19_04641	0.47	+0.8
24,126	+	MPMX19_04641	0.47	-1.8
24,126	+	MPMX19_04641	0.47	+1.1
24,126	+	MPMX19_04641	0.47	-2.0
24,126	+	MPMX19_04641	0.47	-1.2
24,127	-	MPMX19_04641	0.47	-0.3
24,127	-	MPMX19_04641	0.47	+0.8
24,127	-	MPMX19_04641	0.47	+0.6
24,448	-	MPMX19_04641	0.63	-1.7
24,504	+	MPMX19_04641	0.66	-0.8
24,504	+	MPMX19_04641	0.66	-0.5
24,504	+	MPMX19_04641	0.66	+0.2
24,504	+	MPMX19_04641	0.66	-2.6
24,504	+	MPMX19_04641	0.66	+0.3
24,504	+	MPMX19_04641	0.66	-0.2
24,504	+	MPMX19_04641	0.66	+0.7
24,504	+	MPMX19_04641	0.66	+0.3
24,504	+	MPMX19_04641	0.66	+1.1
24,504	+	MPMX19_04641	0.66	-0.7
24,504	+	MPMX19_04641	0.66	+0.2
24,504	+	MPMX19_04641	0.66	-1.4
24,504	+	MPMX19_04641	0.66	-1.5
24,504	+	MPMX19_04641	0.66	+0.3
24,504	+	MPMX19_04641	0.66	+0.1
24,505	-	MPMX19_04641	0.66	-0.0
24,505	-	MPMX19_04641	0.66	-1.1
24,505	-	MPMX19_04641	0.66	-0.8
24,505	-	MPMX19_04641	0.66	+0.4
24,505	-	MPMX19_04641	0.66	+0.3
24,505	-	MPMX19_04641	0.66	-1.3
24,505	-	MPMX19_04641	0.66	-0.6
24,505	-	MPMX19_04641	0.66	-0.5
24,505	-	MPMX19_04641	0.66	-0.7
24,729	+	MPMX19_04641	0.77	-0.8
24,729	+	MPMX19_04641	0.77	-0.5
24,870	+	MPMX19_04641	0.84	-0.6
24,870	+	MPMX19_04641	0.84	+0.6
24,870	+	MPMX19_04641	0.84	-0.8
24,870	+	MPMX19_04641	0.84	-2.1
24,871	-	MPMX19_04641	0.84	-0.8
24,871	-	MPMX19_04641	0.84	+2.2
24,871	-	MPMX19_04641	0.84	+0.2
24,871	-	MPMX19_04641	0.84	-2.1
24,871	-	MPMX19_04641	0.84	+0.8
24,871	-	MPMX19_04641	0.84	-0.2
24,873	+	MPMX19_04641	0.84	-1.0
24,874	-	MPMX19_04641	0.84	-0.4
25,029	+			+1.1
25,029	+			-0.7
25,029	+			-0.9
25,029	+			-0.1
25,029	+			-0.6
25,029	+			-0.8
25,029	+			-1.6
25,029	+			+0.6
25,029	+			-0.6
25,030	-			-1.1
25,030	-			+0.9
25,030	-			+0.5
25,030	-			-0.3
25,030	-			-0.5
25,030	-			+0.2
25,030	-			-1.3
25,030	-			+1.1
25,030	-			-0.3
25,030	-			+1.8
25,030	-			-1.3
25,083	+			-0.7
25,083	+			-1.1
25,084	-			-1.1
25,089	+			-0.8
25,089	+			-1.3
25,089	+			-1.7
25,089	+			-1.1
25,089	+			+0.2
25,089	+			-0.4
25,089	+			-2.1
25,089	+			+0.0
25,089	+			-0.5
25,089	+			-0.8
25,089	+			+0.1
25,089	+			-0.5
25,089	+			+0.8
25,089	+			+1.2
25,090	-			-0.8
25,090	-			+0.6
25,090	-			-0.4
25,090	-			-0.4
25,090	-			+0.0
25,090	-			+0.4
25,090	-			+1.5
25,090	-			+0.3
25,090	-			-1.5
25,090	-			-1.1
25,090	-			+0.3
25,090	-			+0.6
25,090	-			+0.2
25,090	-			-2.0
25,090	-			-0.5
25,090	-			-0.7
25,090	-			+0.3
25,090	-			-0.4
25,090	-			-0.1
25,090	-			+0.2
25,090	-			+1.7
25,122	+			-0.3
25,122	+			-0.1
25,146	+			+1.0
25,146	+			-0.3
25,146	+			-0.7
25,146	+			+0.2
25,146	+			+0.3
25,146	+			-2.8
25,146	+			-1.2
25,146	+			-0.8
25,146	+			-1.2
25,146	+			+0.3
25,146	+			-0.7
25,146	+			-0.2
25,146	+			+1.0
25,147	-			+0.1
25,147	-			+0.7
25,147	-			+2.1
25,147	-			+0.3
25,147	-			+0.4
25,147	-			+0.1
25,147	-			+1.2
25,147	-			-0.5
25,182	+			+0.2
25,207	+			-0.3
25,207	+			-0.2
25,208	-			-0.6
25,208	-			+0.5
25,208	-			-1.0
25,210	+			-0.5
25,210	+			-0.4
25,210	+			-0.4
25,211	-			+0.5
25,211	-			-2.5
25,255	+			-1.3
25,255	+			-1.5
25,255	+			-0.1
25,255	+			-1.7
25,255	+			-2.2
25,255	+			+0.8
25,255	+			-0.4
25,255	+			+0.7
25,255	+			-1.0
25,255	+			-0.4
25,256	-			-0.5
25,256	-			-0.8
25,256	-			-0.5
25,256	-			-0.1
25,256	-			-0.5
25,256	-			-0.0
25,313	+			+0.2
25,313	+			+0.3
25,314	-			-2.3
25,355	-			+0.7
25,355	-			-1.0
25,368	-			+1.2
25,368	-			-1.3
25,380	+			-1.0
25,381	-			-1.7
25,383	-			-1.5
25,383	-			+1.0
25,460	+			-1.1
25,503	+			-1.6
25,505	+			-0.7
25,505	+			-0.3
25,505	+			-0.1
25,505	+			+0.9
25,539	+			+0.2
25,540	-			-0.1
25,540	-			-1.9
25,540	-			+0.2
25,540	-			-1.7
25,540	-			-0.5
25,544	+			+0.7
25,545	-			-2.4
25,545	-			+0.3
25,601	+			+1.2
25,876	+			-0.7
25,876	+			-0.4
25,876	+			-0.3
25,876	+			-0.7
25,876	+			+1.0
25,876	+			+0.3
25,876	+			+0.5
25,877	-			+0.8
25,877	-			-0.2
25,877	-			-0.5
25,877	-			-1.7
25,877	-			-0.5
25,877	-			-0.3
25,877	-			-0.0
25,877	-			+0.4
25,877	-			-0.5
25,966	+	MPMX19_04642	0.11	+0.3
25,966	+	MPMX19_04642	0.11	-1.2
25,966	+	MPMX19_04642	0.11	-0.8
25,966	+	MPMX19_04642	0.11	-2.8
25,966	+	MPMX19_04642	0.11	-0.1
25,966	+	MPMX19_04642	0.11	-1.3
25,966	+	MPMX19_04642	0.11	-0.8
25,966	+	MPMX19_04642	0.11	+0.9
25,966	+	MPMX19_04642	0.11	-2.5
25,966	+	MPMX19_04642	0.11	-0.1
25,966	+	MPMX19_04642	0.11	-0.6
25,967	-	MPMX19_04642	0.12	-0.8
25,967	-	MPMX19_04642	0.12	-2.2
25,967	-	MPMX19_04642	0.12	+0.1
25,967	-	MPMX19_04642	0.12	-1.5
25,967	-	MPMX19_04642	0.12	+0.3
25,967	-	MPMX19_04642	0.12	-0.7
25,967	-	MPMX19_04642	0.12	-1.1
26,080	+	MPMX19_04642	0.25	+0.1
26,080	+	MPMX19_04642	0.25	+0.2
26,080	+	MPMX19_04642	0.25	-0.2
26,080	+	MPMX19_04642	0.25	+0.9
26,080	+	MPMX19_04642	0.25	-0.8
26,080	+	MPMX19_04642	0.25	-0.0
26,080	+	MPMX19_04642	0.25	-0.6
26,080	+	MPMX19_04642	0.25	-0.7
26,080	+	MPMX19_04642	0.25	+0.3
26,080	+	MPMX19_04642	0.25	+0.2
26,080	+	MPMX19_04642	0.25	-0.4
26,080	+	MPMX19_04642	0.25	-0.6
26,081	-	MPMX19_04642	0.25	+0.3
26,081	-	MPMX19_04642	0.25	-0.0
26,081	-	MPMX19_04642	0.25	-0.3
26,081	-	MPMX19_04642	0.25	-2.2
26,081	-	MPMX19_04642	0.25	-2.0
26,081	-	MPMX19_04642	0.25	-0.2
26,081	-	MPMX19_04642	0.25	-0.4
26,081	-	MPMX19_04642	0.25	-0.3
26,081	-	MPMX19_04642	0.25	-1.1
26,081	-	MPMX19_04642	0.25	+0.7

Or see this region's nucleotide sequence