Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04635 and MPMX19_04636 are separated by 10 nucleotides MPMX19_04636 and MPMX19_04637 overlap by 4 nucleotides
MPMX19_04635: MPMX19_04635 - D-inositol-3-phosphate glycosyltransferase, at 13,094 to 14,281
_04635
MPMX19_04636: MPMX19_04636 - D-inositol-3-phosphate glycosyltransferase, at 14,292 to 15,551
_04636
MPMX19_04637: MPMX19_04637 - hypothetical protein, at 15,548 to 17,251
_04637
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.625 kb on + strand, within MPMX19_04635 at 13.626 kb on - strand, within MPMX19_04635 at 13.626 kb on - strand, within MPMX19_04635 at 13.682 kb on + strand, within MPMX19_04635 at 13.962 kb on - strand, within MPMX19_04635 at 14.291 kb on + strand at 14.291 kb on + strand at 14.292 kb on - strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.682 kb on + strand, within MPMX19_04636 at 14.682 kb on + strand, within MPMX19_04636 at 15.231 kb on + strand, within MPMX19_04636 at 15.232 kb on - strand, within MPMX19_04636 at 15.232 kb on - strand, within MPMX19_04636 at 15.255 kb on + strand, within MPMX19_04636 at 15.255 kb on + strand, within MPMX19_04636 at 15.256 kb on - strand, within MPMX19_04636 at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.433 kb on - strand at 15.442 kb on - strand at 15.442 kb on - strand at 15.459 kb on - strand at 15.459 kb on - strand at 15.495 kb on + strand at 15.495 kb on + strand at 15.495 kb on + strand at 15.495 kb on + strand at 15.496 kb on - strand at 15.496 kb on - strand at 15.496 kb on - strand at 15.496 kb on - strand at 15.633 kb on + strand at 15.633 kb on + strand at 15.634 kb on - strand at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 16.106 kb on - strand, within MPMX19_04637 at 16.115 kb on + strand, within MPMX19_04637 at 16.115 kb on + strand, within MPMX19_04637 at 16.115 kb on + strand, within MPMX19_04637 at 16.116 kb on - strand, within MPMX19_04637 at 16.290 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.329 kb on - strand, within MPMX19_04637
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 13,562 + MPMX19_04635 0.39 +0.5 13,562 + MPMX19_04635 0.39 -0.1 13,562 + MPMX19_04635 0.39 -1.2 13,562 + MPMX19_04635 0.39 -1.6 13,562 + MPMX19_04635 0.39 -0.4 13,562 + MPMX19_04635 0.39 -0.2 13,562 + MPMX19_04635 0.39 +0.5 13,563 - MPMX19_04635 0.39 -0.9 13,563 - MPMX19_04635 0.39 +0.2 13,563 - MPMX19_04635 0.39 -1.1 13,563 - MPMX19_04635 0.39 -2.8 13,625 + MPMX19_04635 0.45 +1.3 13,626 - MPMX19_04635 0.45 +0.9 13,626 - MPMX19_04635 0.45 -0.3 13,682 + MPMX19_04635 0.49 -0.8 13,962 - MPMX19_04635 0.73 +0.8 14,291 + +1.5 14,291 + -0.8 14,292 - -2.1 14,297 + -0.5 14,297 + +1.3 14,297 + -2.1 14,297 + -0.6 14,297 + -0.3 14,297 + +0.2 14,297 + -0.1 14,297 + -0.4 14,297 + +0.1 14,297 + -0.1 14,297 - -0.3 14,298 - +0.2 14,298 - +0.1 14,298 - +0.3 14,298 - -0.8 14,682 + MPMX19_04636 0.31 -0.1 14,682 + MPMX19_04636 0.31 -1.4 15,231 + MPMX19_04636 0.75 -0.7 15,232 - MPMX19_04636 0.75 +0.8 15,232 - MPMX19_04636 0.75 -1.8 15,255 + MPMX19_04636 0.76 -1.5 15,255 + MPMX19_04636 0.76 -0.0 15,256 - MPMX19_04636 0.77 -0.5 15,432 + -1.0 15,432 + -0.7 15,432 + -1.1 15,432 + -0.7 15,432 + +0.4 15,432 + +1.1 15,433 - -2.5 15,442 - +1.1 15,442 - -0.3 15,459 - -0.1 15,459 - -0.6 15,495 + +1.1 15,495 + +0.3 15,495 + +1.1 15,495 + +1.3 15,496 - -0.1 15,496 - +0.4 15,496 - +0.5 15,496 - -0.3 15,633 + -0.7 15,633 + +0.7 15,634 - -0.8 15,788 + MPMX19_04637 0.14 -0.8 15,788 + MPMX19_04637 0.14 +1.5 15,788 + MPMX19_04637 0.14 -0.7 15,788 + MPMX19_04637 0.14 -0.1 15,788 + MPMX19_04637 0.14 -3.0 15,788 + MPMX19_04637 0.14 +1.7 15,788 + MPMX19_04637 0.14 -0.3 15,788 + MPMX19_04637 0.14 -1.1 15,788 + MPMX19_04637 0.14 -0.1 15,788 + MPMX19_04637 0.14 -0.8 15,788 + MPMX19_04637 0.14 +0.4 15,789 - MPMX19_04637 0.14 +0.7 15,789 - MPMX19_04637 0.14 -0.1 15,789 - MPMX19_04637 0.14 +0.3 15,789 - MPMX19_04637 0.14 +1.7 15,789 - MPMX19_04637 0.14 -0.8 15,789 - MPMX19_04637 0.14 -1.2 16,106 - MPMX19_04637 0.33 -0.2 16,115 + MPMX19_04637 0.33 -1.5 16,115 + MPMX19_04637 0.33 -0.3 16,115 + MPMX19_04637 0.33 +0.6 16,116 - MPMX19_04637 0.33 -0.9 16,290 + MPMX19_04637 0.44 +0.2 16,328 + MPMX19_04637 0.46 +0.0 16,328 + MPMX19_04637 0.46 -0.4 16,328 + MPMX19_04637 0.46 -2.1 16,329 - MPMX19_04637 0.46 +0.5
Or see this region's nucleotide sequence