Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04535

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04534 and MPMX19_04535 are separated by 178 nucleotidesMPMX19_04535 and MPMX19_04536 are separated by 76 nucleotides MPMX19_04534: MPMX19_04534 - Multidrug export protein MepA, at 906,952 to 908,382 _04534 MPMX19_04535: MPMX19_04535 - Maleate isomerase, at 908,561 to 909,367 _04535 MPMX19_04536: MPMX19_04536 - D-amino acid dehydrogenase 1, at 909,444 to 910,691 _04536 Position (kb) 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.862 kb on + strand, within MPMX19_04534at 907.862 kb on + strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.970 kb on + strand, within MPMX19_04534at 907.970 kb on + strand, within MPMX19_04534at 907.970 kb on + strand, within MPMX19_04534at 907.971 kb on - strand, within MPMX19_04534at 907.971 kb on - strand, within MPMX19_04534at 907.971 kb on - strand, within MPMX19_04534at 908.258 kb on + strandat 908.258 kb on + strandat 908.258 kb on + strandat 908.258 kb on + strandat 908.259 kb on - strandat 908.366 kb on - strandat 908.366 kb on - strandat 908.366 kb on - strandat 908.430 kb on + strandat 908.430 kb on + strandat 908.431 kb on - strandat 908.431 kb on - strandat 908.562 kb on + strandat 908.874 kb on + strand, within MPMX19_04535at 908.874 kb on + strand, within MPMX19_04535at 908.874 kb on + strand, within MPMX19_04535at 908.875 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.358 kb on - strandat 909.361 kb on + strandat 909.362 kb on - strandat 909.640 kb on + strand, within MPMX19_04536at 909.640 kb on + strand, within MPMX19_04536at 909.640 kb on + strand, within MPMX19_04536at 909.640 kb on + strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.788 kb on - strand, within MPMX19_04536at 909.788 kb on - strand, within MPMX19_04536at 909.862 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.866 kb on - strand, within MPMX19_04536at 909.866 kb on - strand, within MPMX19_04536at 909.880 kb on + strand, within MPMX19_04536at 909.880 kb on + strand, within MPMX19_04536at 909.881 kb on - strand, within MPMX19_04536at 909.881 kb on - strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 910.034 kb on - strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.270 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.277 kb on - strand, within MPMX19_04536at 910.277 kb on - strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.352 kb on - strand, within MPMX19_04536

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
907,610 + MPMX19_04534 0.46 +0.3
907,610 + MPMX19_04534 0.46 +0.1
907,610 + MPMX19_04534 0.46 +0.2
907,610 + MPMX19_04534 0.46 +0.1
907,610 + MPMX19_04534 0.46 -0.5
907,610 + MPMX19_04534 0.46 +0.2
907,610 + MPMX19_04534 0.46 +0.2
907,611 - MPMX19_04534 0.46 -0.0
907,611 - MPMX19_04534 0.46 +0.2
907,611 - MPMX19_04534 0.46 +0.4
907,611 - MPMX19_04534 0.46 -0.1
907,611 - MPMX19_04534 0.46 -0.6
907,611 - MPMX19_04534 0.46 -0.3
907,611 - MPMX19_04534 0.46 -0.1
907,611 - MPMX19_04534 0.46 -0.7
907,611 - MPMX19_04534 0.46 -0.4
907,611 - MPMX19_04534 0.46 +0.2
907,611 - MPMX19_04534 0.46 -1.7
907,862 + MPMX19_04534 0.64 +0.1
907,862 + MPMX19_04534 0.64 -0.5
907,863 - MPMX19_04534 0.64 -0.4
907,863 - MPMX19_04534 0.64 -0.4
907,863 - MPMX19_04534 0.64 -0.4
907,970 + MPMX19_04534 0.71 -1.9
907,970 + MPMX19_04534 0.71 +1.1
907,970 + MPMX19_04534 0.71 -0.1
907,971 - MPMX19_04534 0.71 -1.9
907,971 - MPMX19_04534 0.71 +0.4
907,971 - MPMX19_04534 0.71 +0.5
908,258 + +0.6
908,258 + -0.1
908,258 + -0.4
908,258 + +0.5
908,259 - +0.2
908,366 - -1.4
908,366 - +0.6
908,366 - -0.2
908,430 + -0.2
908,430 + +0.1
908,431 - +1.4
908,431 - -0.5
908,562 + +0.6
908,874 + MPMX19_04535 0.39 -0.0
908,874 + MPMX19_04535 0.39 +0.8
908,874 + MPMX19_04535 0.39 -0.2
908,875 - MPMX19_04535 0.39 -0.4
909,184 - MPMX19_04535 0.77 +0.2
909,184 - MPMX19_04535 0.77 +0.3
909,184 - MPMX19_04535 0.77 -1.2
909,358 - -0.6
909,361 + -2.1
909,362 - -0.5
909,640 + MPMX19_04536 0.16 -1.2
909,640 + MPMX19_04536 0.16 -0.5
909,640 + MPMX19_04536 0.16 -1.8
909,640 + MPMX19_04536 0.16 +1.2
909,641 - MPMX19_04536 0.16 -0.6
909,641 - MPMX19_04536 0.16 +0.1
909,641 - MPMX19_04536 0.16 -1.4
909,641 - MPMX19_04536 0.16 +0.3
909,787 + MPMX19_04536 0.27 -0.9
909,787 + MPMX19_04536 0.27 -1.0
909,787 + MPMX19_04536 0.27 -1.4
909,788 - MPMX19_04536 0.28 +0.4
909,788 - MPMX19_04536 0.28 +0.6
909,862 + MPMX19_04536 0.33 -0.1
909,865 + MPMX19_04536 0.34 +0.4
909,865 + MPMX19_04536 0.34 -0.1
909,865 + MPMX19_04536 0.34 -0.2
909,865 + MPMX19_04536 0.34 +2.1
909,866 - MPMX19_04536 0.34 -0.7
909,866 - MPMX19_04536 0.34 +0.1
909,880 + MPMX19_04536 0.35 -0.8
909,880 + MPMX19_04536 0.35 +0.6
909,881 - MPMX19_04536 0.35 -0.5
909,881 - MPMX19_04536 0.35 -3.0
909,946 + MPMX19_04536 0.40 -1.7
909,946 + MPMX19_04536 0.40 -0.3
909,946 + MPMX19_04536 0.40 -0.1
909,946 + MPMX19_04536 0.40 +0.2
909,946 + MPMX19_04536 0.40 +0.1
909,946 + MPMX19_04536 0.40 -1.4
909,946 + MPMX19_04536 0.40 +0.2
909,946 + MPMX19_04536 0.40 +0.7
909,946 + MPMX19_04536 0.40 -0.4
909,946 + MPMX19_04536 0.40 -1.5
909,946 + MPMX19_04536 0.40 +0.0
909,947 - MPMX19_04536 0.40 +0.6
909,947 - MPMX19_04536 0.40 -1.7
909,947 - MPMX19_04536 0.40 -1.5
909,947 - MPMX19_04536 0.40 +0.3
909,947 - MPMX19_04536 0.40 -0.6
909,947 - MPMX19_04536 0.40 +0.9
909,947 - MPMX19_04536 0.40 -1.0
909,947 - MPMX19_04536 0.40 -0.2
909,947 - MPMX19_04536 0.40 -0.2
909,947 - MPMX19_04536 0.40 -0.7
910,034 - MPMX19_04536 0.47 -1.3
910,120 + MPMX19_04536 0.54 -1.6
910,120 + MPMX19_04536 0.54 -0.6
910,120 + MPMX19_04536 0.54 +0.2
910,120 + MPMX19_04536 0.54 -0.8
910,120 + MPMX19_04536 0.54 +0.1
910,120 + MPMX19_04536 0.54 +0.2
910,120 + MPMX19_04536 0.54 -1.2
910,120 + MPMX19_04536 0.54 +0.1
910,120 + MPMX19_04536 0.54 +0.1
910,120 + MPMX19_04536 0.54 -1.2
910,120 + MPMX19_04536 0.54 +0.4
910,120 + MPMX19_04536 0.54 -1.4
910,120 + MPMX19_04536 0.54 -0.4
910,121 - MPMX19_04536 0.54 +0.9
910,121 - MPMX19_04536 0.54 -0.2
910,121 - MPMX19_04536 0.54 +1.3
910,121 - MPMX19_04536 0.54 -1.1
910,121 - MPMX19_04536 0.54 +0.4
910,121 - MPMX19_04536 0.54 -1.4
910,121 - MPMX19_04536 0.54 +0.4
910,121 - MPMX19_04536 0.54 +0.1
910,121 - MPMX19_04536 0.54 -0.7
910,121 - MPMX19_04536 0.54 -0.7
910,121 - MPMX19_04536 0.54 +0.2
910,121 - MPMX19_04536 0.54 +0.1
910,270 + MPMX19_04536 0.66 +0.4
910,276 + MPMX19_04536 0.67 -0.6
910,276 + MPMX19_04536 0.67 -0.9
910,276 + MPMX19_04536 0.67 -1.3
910,276 + MPMX19_04536 0.67 -0.8
910,276 + MPMX19_04536 0.67 -0.7
910,277 - MPMX19_04536 0.67 +0.3
910,277 - MPMX19_04536 0.67 +0.8
910,351 + MPMX19_04536 0.73 +0.5
910,351 + MPMX19_04536 0.73 -0.4
910,352 - MPMX19_04536 0.73 +0.4

Or see this region's nucleotide sequence