Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04530

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04528 and MPMX19_04529 are separated by 108 nucleotidesMPMX19_04529 and MPMX19_04530 are separated by 41 nucleotidesMPMX19_04530 and MPMX19_04531 overlap by 4 nucleotidesMPMX19_04531 and MPMX19_04532 overlap by 4 nucleotides MPMX19_04528: MPMX19_04528 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 901,390 to 902,139 _04528 MPMX19_04529: MPMX19_04529 - hypothetical protein, at 902,248 to 902,730 _04529 MPMX19_04530: MPMX19_04530 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 902,772 to 903,656 _04530 MPMX19_04531: MPMX19_04531 - hypothetical protein, at 903,653 to 903,868 _04531 MPMX19_04532: MPMX19_04532 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 903,865 to 906,003 _04532 Position (kb) 902 903 904Strain fitness (log2 ratio) -2 -1 0 1 2at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.969 kb on + strand, within MPMX19_04528at 901.969 kb on + strand, within MPMX19_04528at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.486 kb on - strand, within MPMX19_04529at 902.486 kb on - strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.618 kb on - strand, within MPMX19_04529at 902.618 kb on - strand, within MPMX19_04529at 902.618 kb on - strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.877 kb on + strand, within MPMX19_04530at 902.878 kb on - strand, within MPMX19_04530at 902.878 kb on - strand, within MPMX19_04530at 903.047 kb on + strand, within MPMX19_04530at 903.048 kb on - strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.074 kb on - strand, within MPMX19_04530at 903.074 kb on - strand, within MPMX19_04530at 903.074 kb on - strand, within MPMX19_04530at 903.136 kb on + strand, within MPMX19_04530at 903.137 kb on - strand, within MPMX19_04530at 903.137 kb on - strand, within MPMX19_04530at 903.169 kb on + strand, within MPMX19_04530at 903.169 kb on + strand, within MPMX19_04530at 903.169 kb on + strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.170 kb on - strand, within MPMX19_04530at 903.247 kb on + strand, within MPMX19_04530at 903.247 kb on + strand, within MPMX19_04530at 903.247 kb on + strand, within MPMX19_04530at 903.247 kb on + strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.248 kb on - strand, within MPMX19_04530at 903.430 kb on + strand, within MPMX19_04530at 903.430 kb on + strand, within MPMX19_04530at 903.431 kb on - strand, within MPMX19_04530at 903.431 kb on - strand, within MPMX19_04530at 903.431 kb on - strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.454 kb on + strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.455 kb on - strand, within MPMX19_04530at 903.625 kb on + strandat 903.699 kb on + strand, within MPMX19_04531at 903.699 kb on + strand, within MPMX19_04531at 903.699 kb on + strand, within MPMX19_04531at 903.699 kb on + strand, within MPMX19_04531at 903.699 kb on + strand, within MPMX19_04531at 903.699 kb on + strand, within MPMX19_04531at 903.699 kb on + strand, within MPMX19_04531at 903.700 kb on - strand, within MPMX19_04531at 903.700 kb on - strand, within MPMX19_04531at 904.085 kb on + strand, within MPMX19_04532at 904.085 kb on + strand, within MPMX19_04532at 904.086 kb on - strand, within MPMX19_04532at 904.086 kb on - strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.457 kb on + strand, within MPMX19_04532at 904.458 kb on - strand, within MPMX19_04532at 904.458 kb on - strand, within MPMX19_04532at 904.458 kb on - strand, within MPMX19_04532at 904.458 kb on - strand, within MPMX19_04532at 904.458 kb on - strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.514 kb on + strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.515 kb on - strand, within MPMX19_04532at 904.622 kb on + strand, within MPMX19_04532at 904.622 kb on + strand, within MPMX19_04532at 904.622 kb on + strand, within MPMX19_04532at 904.622 kb on + strand, within MPMX19_04532at 904.622 kb on + strand, within MPMX19_04532at 904.623 kb on - strand, within MPMX19_04532

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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901,837 + MPMX19_04528 0.60 -0.4
901,837 + MPMX19_04528 0.60 -0.4
901,837 + MPMX19_04528 0.60 -0.1
901,837 + MPMX19_04528 0.60 +1.5
901,837 + MPMX19_04528 0.60 +2.0
901,837 + MPMX19_04528 0.60 +1.1
901,837 + MPMX19_04528 0.60 +0.4
901,837 + MPMX19_04528 0.60 +0.5
901,837 + MPMX19_04528 0.60 -0.9
901,837 + MPMX19_04528 0.60 -1.4
901,837 + MPMX19_04528 0.60 -1.5
901,837 + MPMX19_04528 0.60 -1.5
901,838 - MPMX19_04528 0.60 +0.1
901,838 - MPMX19_04528 0.60 -0.2
901,838 - MPMX19_04528 0.60 -1.6
901,838 - MPMX19_04528 0.60 -0.7
901,838 - MPMX19_04528 0.60 -0.7
901,838 - MPMX19_04528 0.60 -0.3
901,838 - MPMX19_04528 0.60 -0.1
901,969 + MPMX19_04528 0.77 +1.2
901,969 + MPMX19_04528 0.77 +0.1
902,485 + MPMX19_04529 0.49 -0.1
902,485 + MPMX19_04529 0.49 -0.3
902,485 + MPMX19_04529 0.49 +0.8
902,485 + MPMX19_04529 0.49 -0.7
902,485 + MPMX19_04529 0.49 -0.6
902,485 + MPMX19_04529 0.49 +0.6
902,485 + MPMX19_04529 0.49 -0.2
902,486 - MPMX19_04529 0.49 -0.8
902,486 - MPMX19_04529 0.49 -0.8
902,509 + MPMX19_04529 0.54 +1.4
902,509 + MPMX19_04529 0.54 -0.5
902,509 + MPMX19_04529 0.54 +0.5
902,509 + MPMX19_04529 0.54 +0.5
902,509 + MPMX19_04529 0.54 -0.7
902,509 + MPMX19_04529 0.54 -2.1
902,510 - MPMX19_04529 0.54 -0.6
902,510 - MPMX19_04529 0.54 -0.1
902,510 - MPMX19_04529 0.54 -0.9
902,510 - MPMX19_04529 0.54 -1.5
902,617 + MPMX19_04529 0.76 +0.5
902,617 + MPMX19_04529 0.76 -0.5
902,617 + MPMX19_04529 0.76 -0.7
902,617 + MPMX19_04529 0.76 -0.4
902,618 - MPMX19_04529 0.77 -0.2
902,618 - MPMX19_04529 0.77 -0.9
902,618 - MPMX19_04529 0.77 +0.5
902,629 + MPMX19_04529 0.79 -1.7
902,629 + MPMX19_04529 0.79 +1.5
902,629 + MPMX19_04529 0.79 -0.1
902,629 + MPMX19_04529 0.79 +0.2
902,629 + MPMX19_04529 0.79 +0.8
902,629 + MPMX19_04529 0.79 -0.9
902,629 + MPMX19_04529 0.79 +0.5
902,629 + MPMX19_04529 0.79 -0.7
902,629 + MPMX19_04529 0.79 -0.3
902,630 - MPMX19_04529 0.79 -0.6
902,630 - MPMX19_04529 0.79 +0.3
902,630 - MPMX19_04529 0.79 -1.2
902,630 - MPMX19_04529 0.79 +0.3
902,630 - MPMX19_04529 0.79 -2.3
902,630 - MPMX19_04529 0.79 -0.2
902,630 - MPMX19_04529 0.79 +0.3
902,630 - MPMX19_04529 0.79 -0.7
902,630 - MPMX19_04529 0.79 -0.6
902,630 - MPMX19_04529 0.79 -0.0
902,630 - MPMX19_04529 0.79 +1.1
902,630 - MPMX19_04529 0.79 -0.2
902,630 - MPMX19_04529 0.79 -0.8
902,630 - MPMX19_04529 0.79 +0.8
902,630 - MPMX19_04529 0.79 +0.1
902,877 + MPMX19_04530 0.12 -0.1
902,878 - MPMX19_04530 0.12 -0.4
902,878 - MPMX19_04530 0.12 +0.6
903,047 + MPMX19_04530 0.31 -1.4
903,048 - MPMX19_04530 0.31 -1.9
903,073 + MPMX19_04530 0.34 -0.7
903,073 + MPMX19_04530 0.34 -1.4
903,073 + MPMX19_04530 0.34 +0.3
903,073 + MPMX19_04530 0.34 +0.2
903,073 + MPMX19_04530 0.34 -0.7
903,074 - MPMX19_04530 0.34 -0.6
903,074 - MPMX19_04530 0.34 -2.1
903,074 - MPMX19_04530 0.34 +0.1
903,136 + MPMX19_04530 0.41 -2.1
903,137 - MPMX19_04530 0.41 +0.2
903,137 - MPMX19_04530 0.41 -0.6
903,169 + MPMX19_04530 0.45 +0.3
903,169 + MPMX19_04530 0.45 +1.4
903,169 + MPMX19_04530 0.45 -0.8
903,170 - MPMX19_04530 0.45 +0.5
903,170 - MPMX19_04530 0.45 +0.5
903,170 - MPMX19_04530 0.45 -1.2
903,170 - MPMX19_04530 0.45 -0.1
903,170 - MPMX19_04530 0.45 -0.9
903,170 - MPMX19_04530 0.45 +0.1
903,170 - MPMX19_04530 0.45 -0.8
903,170 - MPMX19_04530 0.45 +2.1
903,247 + MPMX19_04530 0.54 +0.6
903,247 + MPMX19_04530 0.54 +0.5
903,247 + MPMX19_04530 0.54 -0.2
903,247 + MPMX19_04530 0.54 -0.2
903,248 - MPMX19_04530 0.54 -0.5
903,248 - MPMX19_04530 0.54 +0.1
903,248 - MPMX19_04530 0.54 +0.3
903,248 - MPMX19_04530 0.54 +0.9
903,248 - MPMX19_04530 0.54 -0.7
903,248 - MPMX19_04530 0.54 -1.4
903,248 - MPMX19_04530 0.54 -0.2
903,430 + MPMX19_04530 0.74 +0.9
903,430 + MPMX19_04530 0.74 +0.6
903,431 - MPMX19_04530 0.74 +1.2
903,431 - MPMX19_04530 0.74 +1.2
903,431 - MPMX19_04530 0.74 +1.4
903,454 + MPMX19_04530 0.77 +1.2
903,454 + MPMX19_04530 0.77 +0.2
903,454 + MPMX19_04530 0.77 +1.0
903,454 + MPMX19_04530 0.77 -0.7
903,454 + MPMX19_04530 0.77 -0.9
903,454 + MPMX19_04530 0.77 +0.6
903,454 + MPMX19_04530 0.77 -0.4
903,454 + MPMX19_04530 0.77 +0.3
903,454 + MPMX19_04530 0.77 +0.7
903,454 + MPMX19_04530 0.77 -2.5
903,454 + MPMX19_04530 0.77 +0.7
903,455 - MPMX19_04530 0.77 +0.2
903,455 - MPMX19_04530 0.77 +1.1
903,455 - MPMX19_04530 0.77 -0.4
903,455 - MPMX19_04530 0.77 -1.2
903,455 - MPMX19_04530 0.77 +0.2
903,455 - MPMX19_04530 0.77 -0.2
903,455 - MPMX19_04530 0.77 -1.3
903,455 - MPMX19_04530 0.77 -0.7
903,455 - MPMX19_04530 0.77 -1.5
903,455 - MPMX19_04530 0.77 -0.3
903,455 - MPMX19_04530 0.77 -0.2
903,455 - MPMX19_04530 0.77 +1.6
903,455 - MPMX19_04530 0.77 +1.2
903,455 - MPMX19_04530 0.77 +0.6
903,455 - MPMX19_04530 0.77 -1.5
903,455 - MPMX19_04530 0.77 +0.5
903,455 - MPMX19_04530 0.77 +0.9
903,455 - MPMX19_04530 0.77 +0.3
903,455 - MPMX19_04530 0.77 -0.8
903,455 - MPMX19_04530 0.77 +0.8
903,455 - MPMX19_04530 0.77 +0.3
903,455 - MPMX19_04530 0.77 +0.7
903,455 - MPMX19_04530 0.77 -0.9
903,625 + -0.4
903,699 + MPMX19_04531 0.21 -0.1
903,699 + MPMX19_04531 0.21 -0.3
903,699 + MPMX19_04531 0.21 +0.6
903,699 + MPMX19_04531 0.21 -0.2
903,699 + MPMX19_04531 0.21 -1.7
903,699 + MPMX19_04531 0.21 +0.7
903,699 + MPMX19_04531 0.21 -0.9
903,700 - MPMX19_04531 0.22 +0.8
903,700 - MPMX19_04531 0.22 +1.2
904,085 + MPMX19_04532 0.10 -2.1
904,085 + MPMX19_04532 0.10 -0.5
904,086 - MPMX19_04532 0.10 +0.5
904,086 - MPMX19_04532 0.10 +1.0
904,457 + MPMX19_04532 0.28 +0.5
904,457 + MPMX19_04532 0.28 -1.4
904,457 + MPMX19_04532 0.28 -0.1
904,457 + MPMX19_04532 0.28 -1.1
904,457 + MPMX19_04532 0.28 +0.3
904,457 + MPMX19_04532 0.28 -0.2
904,457 + MPMX19_04532 0.28 -0.9
904,457 + MPMX19_04532 0.28 +0.6
904,458 - MPMX19_04532 0.28 -1.0
904,458 - MPMX19_04532 0.28 -0.2
904,458 - MPMX19_04532 0.28 -0.1
904,458 - MPMX19_04532 0.28 -0.6
904,458 - MPMX19_04532 0.28 -0.3
904,514 + MPMX19_04532 0.30 -0.8
904,514 + MPMX19_04532 0.30 -1.4
904,514 + MPMX19_04532 0.30 +0.8
904,514 + MPMX19_04532 0.30 -0.7
904,514 + MPMX19_04532 0.30 +0.5
904,514 + MPMX19_04532 0.30 +0.1
904,514 + MPMX19_04532 0.30 +0.5
904,514 + MPMX19_04532 0.30 -1.8
904,515 - MPMX19_04532 0.30 -1.0
904,515 - MPMX19_04532 0.30 +1.1
904,515 - MPMX19_04532 0.30 +1.0
904,515 - MPMX19_04532 0.30 +0.4
904,515 - MPMX19_04532 0.30 +0.3
904,515 - MPMX19_04532 0.30 -0.4
904,515 - MPMX19_04532 0.30 -0.5
904,622 + MPMX19_04532 0.35 +0.9
904,622 + MPMX19_04532 0.35 -0.9
904,622 + MPMX19_04532 0.35 +0.3
904,622 + MPMX19_04532 0.35 +1.2
904,622 + MPMX19_04532 0.35 +0.6
904,623 - MPMX19_04532 0.35 +0.9

Or see this region's nucleotide sequence