Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04389 and MPMX19_04390 are separated by 151 nucleotides MPMX19_04390 and MPMX19_04391 are separated by 222 nucleotides
MPMX19_04389: MPMX19_04389 - Histidinol-phosphate aminotransferase, at 754,378 to 755,469
_04389
MPMX19_04390: MPMX19_04390 - hypothetical protein, at 755,621 to 756,517
_04390
MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957
_04391
Position (kb) 755
756
757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.579 kb on + strand at 755.646 kb on + strand at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.214 kb on - strand, within MPMX19_04390 at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.555 kb on + strand at 756.556 kb on - strand at 756.556 kb on - strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.613 kb on - strand at 756.613 kb on - strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.890 kb on + strand, within MPMX19_04391 at 756.891 kb on - strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.900 kb on - strand, within MPMX19_04391 at 757.053 kb on - strand, within MPMX19_04391 at 757.137 kb on - strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 755,479 - +0.3 755,479 - -0.1 755,479 - -0.2 755,479 - +0.4 755,479 - -0.9 755,479 - -0.4 755,479 - -1.4 755,479 - -0.2 755,579 + +0.3 755,646 + -2.8 756,213 + MPMX19_04390 0.66 +0.3 756,213 + MPMX19_04390 0.66 -2.0 756,213 + MPMX19_04390 0.66 -0.2 756,213 + MPMX19_04390 0.66 -0.7 756,214 - MPMX19_04390 0.66 -1.4 756,552 + -1.4 756,552 + -0.2 756,552 + -0.4 756,552 + -0.3 756,552 + -1.4 756,552 + +1.0 756,553 - -0.2 756,553 - -1.6 756,553 - -0.6 756,553 - -1.0 756,553 - -0.1 756,553 - -1.5 756,553 - +0.3 756,553 - -0.4 756,555 + -0.4 756,556 - -0.1 756,556 - +0.3 756,612 + -0.4 756,612 + -0.9 756,612 + -0.8 756,612 + -0.6 756,612 + -0.4 756,613 - -0.8 756,613 - +0.2 756,616 + -0.5 756,616 + +1.9 756,616 + +0.0 756,616 + -0.1 756,616 + -0.1 756,616 + +0.4 756,616 + -0.1 756,616 + -0.5 756,616 + +0.1 756,616 + -0.3 756,616 + +0.4 756,617 - -0.5 756,617 - +0.9 756,617 - -0.7 756,617 - -0.9 756,617 - -1.6 756,617 - -2.1 756,617 - +0.7 756,617 - -1.0 756,617 - -1.5 756,617 - +0.0 756,617 - -1.8 756,618 + -1.0 756,618 + -0.2 756,618 + -0.2 756,618 + -0.2 756,618 + +0.0 756,618 + -2.0 756,618 + +0.0 756,618 + +0.2 756,618 + -1.4 756,618 + -0.2 756,618 + -0.5 756,618 + +0.5 756,618 + -1.0 756,619 - -1.0 756,619 - +1.6 756,619 - -1.8 756,619 - -1.7 756,619 - +0.0 756,619 - +0.0 756,619 - -0.7 756,619 - +1.1 756,619 - +1.6 756,890 + MPMX19_04391 0.12 -2.5 756,891 - MPMX19_04391 0.12 +1.3 756,899 + MPMX19_04391 0.13 -0.8 756,899 + MPMX19_04391 0.13 +1.1 756,899 + MPMX19_04391 0.13 -0.8 756,899 + MPMX19_04391 0.13 -1.1 756,900 - MPMX19_04391 0.13 -0.7 757,053 - MPMX19_04391 0.26 +0.9 757,137 - MPMX19_04391 0.33 -2.2 757,406 + MPMX19_04391 0.55 -1.4 757,406 + MPMX19_04391 0.55 +0.1 757,406 + MPMX19_04391 0.55 +0.4 757,406 + MPMX19_04391 0.55 +1.6 757,406 + MPMX19_04391 0.55 +1.6 757,406 + MPMX19_04391 0.55 -1.8 757,406 + MPMX19_04391 0.55 -0.5 757,407 - MPMX19_04391 0.55 -1.6 757,407 - MPMX19_04391 0.55 -1.2 757,407 - MPMX19_04391 0.55 -1.2 757,407 - MPMX19_04391 0.55 +1.1 757,407 - MPMX19_04391 0.55 -0.8 757,407 - MPMX19_04391 0.55 +0.6 757,407 - MPMX19_04391 0.55 -0.5 757,472 + MPMX19_04391 0.60 +0.1 757,472 + MPMX19_04391 0.60 -1.1 757,472 + MPMX19_04391 0.60 -0.7 757,472 + MPMX19_04391 0.60 -1.0 757,472 + MPMX19_04391 0.60 -0.8 757,472 + MPMX19_04391 0.60 -2.0 757,473 - MPMX19_04391 0.60 -2.1 757,473 - MPMX19_04391 0.60 -0.7 757,473 - MPMX19_04391 0.60 -2.1 757,473 - MPMX19_04391 0.60 +0.2 757,473 - MPMX19_04391 0.60 -2.8
Or see this region's nucleotide sequence