Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04319 and MPMX19_04320 are separated by 170 nucleotides MPMX19_04320 and MPMX19_04321 are separated by 15 nucleotides MPMX19_04321 and MPMX19_04322 are separated by 73 nucleotides
MPMX19_04319: MPMX19_04319 - Alanine--tRNA ligase, at 682,977 to 685,646
_04319
MPMX19_04320: MPMX19_04320 - Sec-independent protein translocase protein TatC, at 685,817 to 686,605
_04320
MPMX19_04321: MPMX19_04321 - Sec-independent protein translocase protein TatB, at 686,621 to 687,157
_04321
MPMX19_04322: MPMX19_04322 - Sec-independent protein translocase protein TatA, at 687,231 to 687,470
_04322
Position (kb) 685
686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 685.703 kb on - strand at 685.739 kb on + strand at 685.739 kb on + strand at 685.739 kb on + strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.743 kb on - strand at 685.743 kb on - strand at 685.743 kb on - strand at 685.743 kb on - strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.748 kb on - strand at 685.748 kb on - strand at 685.748 kb on - strand at 685.748 kb on - strand at 687.480 kb on - strand at 687.480 kb on - strand at 687.480 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 685,703 - -0.6 685,739 + +0.2 685,739 + -1.3 685,739 + +0.7 685,740 - -1.8 685,740 - -0.5 685,740 - -0.4 685,740 - -0.1 685,740 - -0.4 685,740 - -1.2 685,743 - -0.1 685,743 - +0.6 685,743 - -0.1 685,743 - +0.6 685,747 + +0.1 685,747 + +0.9 685,747 + -2.5 685,747 + -0.7 685,747 + -0.7 685,748 - -1.6 685,748 - -0.7 685,748 - -0.5 685,748 - -1.0 687,480 - +0.6 687,480 - -0.1 687,480 - -2.8 687,516 - -0.1 687,516 - +0.6 687,516 - +0.1 687,516 - -0.6
Or see this region's nucleotide sequence