Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04256 and MPMX19_04257 are separated by 172 nucleotides MPMX19_04257 and MPMX19_04258 are separated by 158 nucleotides
MPMX19_04256: MPMX19_04256 - Photosystem I assembly protein Ycf3, at 613,250 to 617,269
_04256
MPMX19_04257: MPMX19_04257 - D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase, at 617,442 to 618,167
_04257
MPMX19_04258: MPMX19_04258 - hypothetical protein, at 618,326 to 619,435
_04258
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.853 kb on + strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.854 kb on - strand, within MPMX19_04256 at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.919 kb on + strand at 616.920 kb on - strand at 616.920 kb on - strand at 616.920 kb on - strand at 616.920 kb on - strand at 617.052 kb on + strand at 617.052 kb on + strand at 617.052 kb on + strand at 617.053 kb on - strand at 617.053 kb on - strand at 617.329 kb on - strand at 617.335 kb on + strand at 617.335 kb on + strand at 617.335 kb on + strand at 617.336 kb on - strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.386 kb on + strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.387 kb on - strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.470 kb on + strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.471 kb on - strand at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.586 kb on + strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.587 kb on - strand, within MPMX19_04257 at 617.598 kb on + strand, within MPMX19_04257 at 617.598 kb on + strand, within MPMX19_04257 at 617.599 kb on - strand, within MPMX19_04257 at 617.599 kb on - strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.742 kb on + strand, within MPMX19_04257 at 617.743 kb on - strand, within MPMX19_04257 at 617.743 kb on - strand, within MPMX19_04257 at 617.743 kb on - strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.979 kb on + strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 617.980 kb on - strand, within MPMX19_04257 at 618.206 kb on + strand at 618.206 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.291 kb on + strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.292 kb on - strand at 618.312 kb on + strand at 618.312 kb on + strand at 618.596 kb on + strand, within MPMX19_04258 at 618.615 kb on - strand, within MPMX19_04258 at 618.734 kb on + strand, within MPMX19_04258 at 618.735 kb on - strand, within MPMX19_04258 at 618.779 kb on + strand, within MPMX19_04258 at 618.780 kb on - strand, within MPMX19_04258
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 616,853 + MPMX19_04256 0.90 +0.6 616,853 + MPMX19_04256 0.90 +0.5 616,853 + MPMX19_04256 0.90 +0.6 616,853 + MPMX19_04256 0.90 -1.2 616,853 + MPMX19_04256 0.90 -1.5 616,853 + MPMX19_04256 0.90 -1.7 616,854 - MPMX19_04256 0.90 -1.4 616,854 - MPMX19_04256 0.90 -0.8 616,854 - MPMX19_04256 0.90 +0.6 616,854 - MPMX19_04256 0.90 -0.3 616,919 + -0.4 616,919 + +0.0 616,919 + -0.2 616,919 + -1.4 616,919 + +0.2 616,919 + -0.1 616,919 + +0.2 616,919 + +0.0 616,919 + +0.8 616,920 - -0.1 616,920 - +0.0 616,920 - +0.4 616,920 - -0.7 617,052 + -1.6 617,052 + -0.4 617,052 + +1.8 617,053 - -0.8 617,053 - +1.6 617,329 - +0.5 617,335 + +0.4 617,335 + +0.9 617,335 + -0.6 617,336 - -0.9 617,386 + -2.1 617,386 + +0.0 617,386 + +0.2 617,386 + +0.5 617,386 + +1.2 617,386 + -0.1 617,386 + -0.2 617,386 + +0.2 617,386 + -0.4 617,386 + -1.6 617,387 - +1.3 617,387 - +1.1 617,387 - +0.2 617,387 - -1.4 617,387 - +0.1 617,387 - +0.8 617,387 - +0.1 617,387 - +1.4 617,387 - +0.0 617,387 - +1.6 617,387 - +0.5 617,387 - -1.0 617,470 + +0.3 617,470 + -0.8 617,470 + +0.1 617,470 + +0.6 617,470 + +0.8 617,470 + +0.4 617,470 + -0.0 617,470 + -1.6 617,470 + +0.5 617,470 + -0.6 617,470 + +0.5 617,470 + -0.9 617,470 + +0.5 617,470 + +0.0 617,470 + -0.6 617,470 + -0.7 617,470 + -1.2 617,470 + -0.0 617,470 + -0.2 617,470 + +0.0 617,470 + +0.8 617,470 + +0.2 617,470 + -0.6 617,471 - -0.3 617,471 - -1.0 617,471 - +0.1 617,471 - +0.9 617,471 - -0.2 617,471 - -0.3 617,471 - +0.0 617,471 - +0.1 617,471 - +0.2 617,471 - +1.6 617,471 - +0.6 617,471 - -0.1 617,471 - -1.8 617,471 - +0.2 617,586 + MPMX19_04257 0.20 -0.1 617,586 + MPMX19_04257 0.20 -1.6 617,586 + MPMX19_04257 0.20 +0.3 617,586 + MPMX19_04257 0.20 +0.7 617,586 + MPMX19_04257 0.20 +0.3 617,587 - MPMX19_04257 0.20 -0.7 617,587 - MPMX19_04257 0.20 -1.6 617,587 - MPMX19_04257 0.20 -1.0 617,587 - MPMX19_04257 0.20 -0.4 617,587 - MPMX19_04257 0.20 -0.9 617,598 + MPMX19_04257 0.21 -0.2 617,598 + MPMX19_04257 0.21 +0.7 617,599 - MPMX19_04257 0.22 -0.9 617,599 - MPMX19_04257 0.22 +0.6 617,742 + MPMX19_04257 0.41 -0.6 617,742 + MPMX19_04257 0.41 -1.4 617,742 + MPMX19_04257 0.41 -1.3 617,742 + MPMX19_04257 0.41 -0.9 617,742 + MPMX19_04257 0.41 -0.5 617,742 + MPMX19_04257 0.41 +0.4 617,743 - MPMX19_04257 0.41 +1.3 617,743 - MPMX19_04257 0.41 +0.6 617,743 - MPMX19_04257 0.41 +0.1 617,979 + MPMX19_04257 0.74 +1.0 617,979 + MPMX19_04257 0.74 +0.7 617,979 + MPMX19_04257 0.74 +0.9 617,979 + MPMX19_04257 0.74 +0.1 617,979 + MPMX19_04257 0.74 +0.7 617,979 + MPMX19_04257 0.74 -0.2 617,979 + MPMX19_04257 0.74 -0.9 617,979 + MPMX19_04257 0.74 +1.1 617,979 + MPMX19_04257 0.74 -0.1 617,979 + MPMX19_04257 0.74 -0.5 617,979 + MPMX19_04257 0.74 +0.7 617,980 - MPMX19_04257 0.74 +0.7 617,980 - MPMX19_04257 0.74 +0.3 617,980 - MPMX19_04257 0.74 -0.2 617,980 - MPMX19_04257 0.74 -0.1 617,980 - MPMX19_04257 0.74 +0.3 617,980 - MPMX19_04257 0.74 +1.8 617,980 - MPMX19_04257 0.74 +0.6 617,980 - MPMX19_04257 0.74 -0.9 617,980 - MPMX19_04257 0.74 +1.6 617,980 - MPMX19_04257 0.74 +0.7 617,980 - MPMX19_04257 0.74 -0.9 617,980 - MPMX19_04257 0.74 +0.7 617,980 - MPMX19_04257 0.74 +0.2 618,206 + +0.4 618,206 + -1.4 618,291 + -0.7 618,291 + -1.4 618,291 + -0.5 618,291 + -0.9 618,291 + +2.8 618,291 + -0.3 618,291 + -1.2 618,291 + -0.6 618,292 - -0.7 618,292 - -0.6 618,292 - -0.8 618,292 - +0.4 618,292 - +0.4 618,312 + -1.6 618,312 + -0.4 618,596 + MPMX19_04258 0.24 -0.6 618,615 - MPMX19_04258 0.26 +0.5 618,734 + MPMX19_04258 0.37 -1.0 618,735 - MPMX19_04258 0.37 +0.0 618,779 + MPMX19_04258 0.41 +0.1 618,780 - MPMX19_04258 0.41 +1.0
Or see this region's nucleotide sequence