Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04254

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04253 and MPMX19_04254 are separated by 238 nucleotidesMPMX19_04254 and MPMX19_04255 are separated by 100 nucleotides MPMX19_04253: MPMX19_04253 - Aerobic C4-dicarboxylate transport protein, at 607,237 to 608,568 _04253 MPMX19_04254: MPMX19_04254 - NADP-dependent malic enzyme, at 608,807 to 611,119 _04254 MPMX19_04255: MPMX19_04255 - Lipopolysaccharide assembly protein B, at 611,220 to 613,253 _04255 Position (kb) 608 609 610 611 612Strain fitness (log2 ratio) -2 -1 0 1 2at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.918 kb on + strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.919 kb on - strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.966 kb on + strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 607.967 kb on - strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.020 kb on + strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.021 kb on - strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.050 kb on + strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.051 kb on - strand, within MPMX19_04253at 608.179 kb on + strand, within MPMX19_04253at 608.179 kb on + strand, within MPMX19_04253at 608.180 kb on - strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.209 kb on + strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.210 kb on - strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.278 kb on + strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.279 kb on - strand, within MPMX19_04253at 608.527 kb on + strandat 608.655 kb on + strandat 608.655 kb on + strandat 608.655 kb on + strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.656 kb on - strandat 608.702 kb on - strandat 608.702 kb on - strandat 608.702 kb on - strandat 608.702 kb on - strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.736 kb on + strandat 608.737 kb on - strandat 608.737 kb on - strandat 608.738 kb on + strandat 608.864 kb on - strandat 608.921 kb on + strandat 608.940 kb on - strandat 609.902 kb on + strand, within MPMX19_04254at 609.902 kb on + strand, within MPMX19_04254at 609.902 kb on + strand, within MPMX19_04254at 609.936 kb on - strand, within MPMX19_04254at 609.936 kb on - strand, within MPMX19_04254at 610.049 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.070 kb on + strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.071 kb on - strand, within MPMX19_04254at 610.142 kb on + strand, within MPMX19_04254at 610.142 kb on + strand, within MPMX19_04254at 610.322 kb on + strand, within MPMX19_04254at 610.322 kb on + strand, within MPMX19_04254at 610.323 kb on - strand, within MPMX19_04254at 610.598 kb on + strand, within MPMX19_04254at 610.599 kb on - strand, within MPMX19_04254at 610.599 kb on - strand, within MPMX19_04254at 610.599 kb on - strand, within MPMX19_04254at 611.117 kb on + strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.183 kb on + strandat 611.183 kb on + strandat 611.183 kb on + strandat 611.184 kb on - strandat 611.184 kb on - strandat 611.184 kb on - strandat 611.362 kb on - strandat 611.362 kb on - strandat 611.362 kb on - strandat 611.362 kb on - strandat 611.502 kb on + strand, within MPMX19_04255at 611.503 kb on - strand, within MPMX19_04255at 611.520 kb on + strand, within MPMX19_04255at 611.521 kb on - strand, within MPMX19_04255at 611.668 kb on - strand, within MPMX19_04255at 611.697 kb on + strand, within MPMX19_04255at 611.698 kb on - strand, within MPMX19_04255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
607,918 + MPMX19_04253 0.51 +0.9
607,918 + MPMX19_04253 0.51 +0.0
607,918 + MPMX19_04253 0.51 +0.8
607,918 + MPMX19_04253 0.51 -0.7
607,918 + MPMX19_04253 0.51 -1.1
607,918 + MPMX19_04253 0.51 -0.5
607,918 + MPMX19_04253 0.51 +0.3
607,918 + MPMX19_04253 0.51 -0.5
607,918 + MPMX19_04253 0.51 -0.3
607,918 + MPMX19_04253 0.51 +1.3
607,918 + MPMX19_04253 0.51 -1.5
607,919 - MPMX19_04253 0.51 +0.0
607,919 - MPMX19_04253 0.51 +0.4
607,919 - MPMX19_04253 0.51 -0.1
607,919 - MPMX19_04253 0.51 +0.9
607,919 - MPMX19_04253 0.51 -1.4
607,919 - MPMX19_04253 0.51 +0.8
607,966 + MPMX19_04253 0.55 -0.6
607,966 + MPMX19_04253 0.55 -0.2
607,966 + MPMX19_04253 0.55 -0.2
607,966 + MPMX19_04253 0.55 +0.1
607,966 + MPMX19_04253 0.55 +0.6
607,967 - MPMX19_04253 0.55 -1.2
607,967 - MPMX19_04253 0.55 +0.2
607,967 - MPMX19_04253 0.55 -1.2
607,967 - MPMX19_04253 0.55 +0.3
607,967 - MPMX19_04253 0.55 +0.1
607,967 - MPMX19_04253 0.55 +1.3
608,020 + MPMX19_04253 0.59 +0.4
608,020 + MPMX19_04253 0.59 +0.2
608,020 + MPMX19_04253 0.59 -0.7
608,020 + MPMX19_04253 0.59 +0.9
608,020 + MPMX19_04253 0.59 +1.0
608,020 + MPMX19_04253 0.59 -0.7
608,020 + MPMX19_04253 0.59 +0.0
608,020 + MPMX19_04253 0.59 -0.4
608,021 - MPMX19_04253 0.59 -0.6
608,021 - MPMX19_04253 0.59 +0.4
608,021 - MPMX19_04253 0.59 -1.1
608,021 - MPMX19_04253 0.59 -1.4
608,021 - MPMX19_04253 0.59 +0.3
608,021 - MPMX19_04253 0.59 -1.2
608,021 - MPMX19_04253 0.59 -1.4
608,021 - MPMX19_04253 0.59 -1.6
608,021 - MPMX19_04253 0.59 -1.3
608,050 + MPMX19_04253 0.61 +1.3
608,050 + MPMX19_04253 0.61 -2.2
608,050 + MPMX19_04253 0.61 +1.1
608,050 + MPMX19_04253 0.61 -1.4
608,051 - MPMX19_04253 0.61 +1.0
608,051 - MPMX19_04253 0.61 +1.2
608,051 - MPMX19_04253 0.61 +0.6
608,051 - MPMX19_04253 0.61 -0.5
608,179 + MPMX19_04253 0.71 -2.1
608,179 + MPMX19_04253 0.71 -1.2
608,180 - MPMX19_04253 0.71 +0.6
608,209 + MPMX19_04253 0.73 +0.2
608,209 + MPMX19_04253 0.73 -0.6
608,209 + MPMX19_04253 0.73 -1.2
608,209 + MPMX19_04253 0.73 -0.2
608,209 + MPMX19_04253 0.73 -0.9
608,209 + MPMX19_04253 0.73 +0.3
608,209 + MPMX19_04253 0.73 -0.2
608,209 + MPMX19_04253 0.73 +0.4
608,209 + MPMX19_04253 0.73 -0.3
608,209 + MPMX19_04253 0.73 -1.3
608,210 - MPMX19_04253 0.73 +0.6
608,210 - MPMX19_04253 0.73 -0.2
608,210 - MPMX19_04253 0.73 -0.4
608,210 - MPMX19_04253 0.73 +0.3
608,210 - MPMX19_04253 0.73 +1.4
608,210 - MPMX19_04253 0.73 -1.6
608,210 - MPMX19_04253 0.73 -0.7
608,210 - MPMX19_04253 0.73 +1.0
608,210 - MPMX19_04253 0.73 +2.6
608,278 + MPMX19_04253 0.78 -0.6
608,278 + MPMX19_04253 0.78 -0.1
608,278 + MPMX19_04253 0.78 -1.3
608,278 + MPMX19_04253 0.78 -0.7
608,278 + MPMX19_04253 0.78 -0.1
608,278 + MPMX19_04253 0.78 -1.6
608,278 + MPMX19_04253 0.78 -0.6
608,278 + MPMX19_04253 0.78 -0.3
608,279 - MPMX19_04253 0.78 +0.3
608,279 - MPMX19_04253 0.78 -1.7
608,279 - MPMX19_04253 0.78 -1.6
608,279 - MPMX19_04253 0.78 -1.6
608,279 - MPMX19_04253 0.78 +1.1
608,279 - MPMX19_04253 0.78 +0.2
608,279 - MPMX19_04253 0.78 -0.1
608,279 - MPMX19_04253 0.78 -0.4
608,279 - MPMX19_04253 0.78 +0.6
608,279 - MPMX19_04253 0.78 -0.1
608,527 + -0.1
608,655 + +0.1
608,655 + +0.6
608,655 + +0.2
608,656 - -0.6
608,656 - +1.0
608,656 - -0.6
608,656 - +0.7
608,656 - -0.4
608,656 - -0.9
608,702 - -0.4
608,702 - +1.1
608,702 - +0.6
608,702 - -0.2
608,736 + -0.5
608,736 + +0.9
608,736 + -0.1
608,736 + -1.0
608,736 + -0.7
608,736 + +0.2
608,736 + -0.9
608,736 + -2.0
608,736 + +0.8
608,737 - +0.6
608,737 - -1.0
608,738 + -1.4
608,864 - -0.1
608,921 + -1.1
608,940 - -0.9
609,902 + MPMX19_04254 0.47 -1.7
609,902 + MPMX19_04254 0.47 -2.2
609,902 + MPMX19_04254 0.47 -0.2
609,936 - MPMX19_04254 0.49 +0.4
609,936 - MPMX19_04254 0.49 -0.6
610,049 + MPMX19_04254 0.54 +0.7
610,070 + MPMX19_04254 0.55 -0.4
610,070 + MPMX19_04254 0.55 -1.1
610,070 + MPMX19_04254 0.55 -0.7
610,070 + MPMX19_04254 0.55 +1.6
610,070 + MPMX19_04254 0.55 -2.0
610,070 + MPMX19_04254 0.55 -0.7
610,070 + MPMX19_04254 0.55 -1.0
610,070 + MPMX19_04254 0.55 -0.6
610,070 + MPMX19_04254 0.55 +0.0
610,070 + MPMX19_04254 0.55 -1.2
610,070 + MPMX19_04254 0.55 +1.6
610,071 - MPMX19_04254 0.55 +1.3
610,071 - MPMX19_04254 0.55 -1.4
610,071 - MPMX19_04254 0.55 -2.0
610,071 - MPMX19_04254 0.55 -0.5
610,071 - MPMX19_04254 0.55 +0.9
610,071 - MPMX19_04254 0.55 -1.2
610,071 - MPMX19_04254 0.55 -2.2
610,142 + MPMX19_04254 0.58 -0.7
610,142 + MPMX19_04254 0.58 -1.2
610,322 + MPMX19_04254 0.65 +0.1
610,322 + MPMX19_04254 0.65 +0.5
610,323 - MPMX19_04254 0.66 -0.4
610,598 + MPMX19_04254 0.77 -0.9
610,599 - MPMX19_04254 0.77 +0.9
610,599 - MPMX19_04254 0.77 +1.4
610,599 - MPMX19_04254 0.77 -1.6
611,117 + -0.9
611,118 - +2.1
611,118 - +1.9
611,118 - -0.1
611,118 - -0.3
611,118 - +0.0
611,183 + -0.1
611,183 + +0.2
611,183 + -1.7
611,184 - +0.0
611,184 - -1.5
611,184 - +0.5
611,362 - +0.3
611,362 - -0.4
611,362 - -1.2
611,362 - +0.0
611,502 + MPMX19_04255 0.14 +0.6
611,503 - MPMX19_04255 0.14 -0.6
611,520 + MPMX19_04255 0.15 -0.3
611,521 - MPMX19_04255 0.15 -0.5
611,668 - MPMX19_04255 0.22 +0.8
611,697 + MPMX19_04255 0.23 -1.6
611,698 - MPMX19_04255 0.24 +0.7

Or see this region's nucleotide sequence