Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04157

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04155 and MPMX19_04156 overlap by 4 nucleotidesMPMX19_04156 and MPMX19_04157 overlap by 4 nucleotidesMPMX19_04157 and MPMX19_04158 overlap by 4 nucleotides MPMX19_04155: MPMX19_04155 - hypothetical protein, at 468,735 to 471,026 _04155 MPMX19_04156: MPMX19_04156 - hypothetical protein, at 471,023 to 471,850 _04156 MPMX19_04157: MPMX19_04157 - D-inositol-3-phosphate glycosyltransferase, at 471,847 to 473,235 _04157 MPMX19_04158: MPMX19_04158 - hypothetical protein, at 473,232 to 475,439 _04158 Position (kb) 471 472 473 474Strain fitness (log2 ratio) -2 -1 0 1 2at 470.868 kb on + strandat 470.868 kb on + strandat 470.868 kb on + strandat 470.868 kb on + strandat 470.868 kb on + strandat 470.868 kb on + strandat 470.868 kb on + strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.869 kb on - strandat 470.892 kb on + strandat 470.892 kb on + strandat 470.892 kb on + strandat 470.892 kb on + strandat 470.893 kb on - strandat 470.893 kb on - strandat 470.893 kb on - strandat 471.287 kb on + strand, within MPMX19_04156at 471.287 kb on + strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.288 kb on - strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.302 kb on + strand, within MPMX19_04156at 471.303 kb on - strand, within MPMX19_04156at 471.303 kb on - strand, within MPMX19_04156at 471.303 kb on - strand, within MPMX19_04156at 471.303 kb on - strand, within MPMX19_04156at 471.303 kb on - strand, within MPMX19_04156at 471.303 kb on - strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.410 kb on + strand, within MPMX19_04156at 471.411 kb on - strand, within MPMX19_04156at 471.411 kb on - strand, within MPMX19_04156at 471.411 kb on - strand, within MPMX19_04156at 471.411 kb on - strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.470 kb on + strand, within MPMX19_04156at 471.471 kb on - strand, within MPMX19_04156at 471.471 kb on - strand, within MPMX19_04156at 471.471 kb on - strand, within MPMX19_04156at 471.471 kb on - strand, within MPMX19_04156at 471.471 kb on - strand, within MPMX19_04156at 471.471 kb on - strand, within MPMX19_04156at 471.530 kb on + strand, within MPMX19_04156at 471.530 kb on + strand, within MPMX19_04156at 471.530 kb on + strand, within MPMX19_04156at 471.530 kb on + strand, within MPMX19_04156at 471.530 kb on + strand, within MPMX19_04156at 471.530 kb on + strand, within MPMX19_04156at 471.531 kb on - strand, within MPMX19_04156at 471.531 kb on - strand, within MPMX19_04156at 471.708 kb on - strand, within MPMX19_04156at 472.271 kb on + strand, within MPMX19_04157at 472.272 kb on - strand, within MPMX19_04157at 472.321 kb on + strand, within MPMX19_04157at 472.321 kb on + strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.322 kb on - strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.336 kb on + strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.337 kb on - strand, within MPMX19_04157at 472.339 kb on + strand, within MPMX19_04157at 472.552 kb on + strand, within MPMX19_04157at 472.552 kb on + strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.553 kb on - strand, within MPMX19_04157at 472.669 kb on + strand, within MPMX19_04157at 472.669 kb on + strand, within MPMX19_04157at 472.669 kb on + strand, within MPMX19_04157at 472.670 kb on - strand, within MPMX19_04157at 472.780 kb on + strand, within MPMX19_04157at 472.781 kb on - strand, within MPMX19_04157at 472.781 kb on - strand, within MPMX19_04157at 472.781 kb on - strand, within MPMX19_04157at 472.859 kb on - strand, within MPMX19_04157at 473.177 kb on - strandat 473.211 kb on + strandat 473.211 kb on + strandat 473.211 kb on + strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 473.212 kb on - strandat 474.099 kb on + strand, within MPMX19_04158at 474.099 kb on + strand, within MPMX19_04158at 474.099 kb on + strand, within MPMX19_04158at 474.100 kb on - strand, within MPMX19_04158

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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470,868 + -1.0
470,868 + +1.0
470,868 + -1.0
470,868 + -0.0
470,868 + -0.8
470,868 + +0.9
470,868 + +0.1
470,869 - +0.5
470,869 - -0.0
470,869 - +0.4
470,869 - +1.1
470,869 - -0.5
470,869 - -1.6
470,869 - -0.3
470,869 - +0.4
470,892 + -0.0
470,892 + -0.2
470,892 + -0.8
470,892 + -1.6
470,893 - -0.1
470,893 - +0.1
470,893 - +0.5
471,287 + MPMX19_04156 0.32 -0.0
471,287 + MPMX19_04156 0.32 +0.3
471,288 - MPMX19_04156 0.32 -1.0
471,288 - MPMX19_04156 0.32 -0.2
471,288 - MPMX19_04156 0.32 -0.2
471,288 - MPMX19_04156 0.32 -0.5
471,288 - MPMX19_04156 0.32 -1.5
471,288 - MPMX19_04156 0.32 -1.5
471,288 - MPMX19_04156 0.32 +0.1
471,288 - MPMX19_04156 0.32 +0.2
471,288 - MPMX19_04156 0.32 +0.2
471,288 - MPMX19_04156 0.32 +0.4
471,302 + MPMX19_04156 0.34 -0.6
471,302 + MPMX19_04156 0.34 -2.5
471,302 + MPMX19_04156 0.34 +0.5
471,302 + MPMX19_04156 0.34 -0.5
471,302 + MPMX19_04156 0.34 -1.5
471,302 + MPMX19_04156 0.34 -0.5
471,302 + MPMX19_04156 0.34 -0.6
471,302 + MPMX19_04156 0.34 -0.5
471,303 - MPMX19_04156 0.34 -0.2
471,303 - MPMX19_04156 0.34 +0.1
471,303 - MPMX19_04156 0.34 -0.4
471,303 - MPMX19_04156 0.34 -0.5
471,303 - MPMX19_04156 0.34 -0.9
471,303 - MPMX19_04156 0.34 -1.7
471,410 + MPMX19_04156 0.47 +0.4
471,410 + MPMX19_04156 0.47 -1.5
471,410 + MPMX19_04156 0.47 -0.8
471,410 + MPMX19_04156 0.47 +1.1
471,410 + MPMX19_04156 0.47 +0.3
471,410 + MPMX19_04156 0.47 -1.3
471,410 + MPMX19_04156 0.47 -0.0
471,410 + MPMX19_04156 0.47 +0.5
471,410 + MPMX19_04156 0.47 -1.6
471,411 - MPMX19_04156 0.47 -0.3
471,411 - MPMX19_04156 0.47 +0.1
471,411 - MPMX19_04156 0.47 +0.9
471,411 - MPMX19_04156 0.47 -1.5
471,470 + MPMX19_04156 0.54 -1.2
471,470 + MPMX19_04156 0.54 -0.7
471,470 + MPMX19_04156 0.54 +0.0
471,470 + MPMX19_04156 0.54 -1.4
471,470 + MPMX19_04156 0.54 -1.5
471,470 + MPMX19_04156 0.54 -0.3
471,470 + MPMX19_04156 0.54 +0.9
471,470 + MPMX19_04156 0.54 +0.9
471,470 + MPMX19_04156 0.54 -0.9
471,471 - MPMX19_04156 0.54 -2.1
471,471 - MPMX19_04156 0.54 -0.2
471,471 - MPMX19_04156 0.54 +0.2
471,471 - MPMX19_04156 0.54 +1.8
471,471 - MPMX19_04156 0.54 +0.5
471,471 - MPMX19_04156 0.54 +0.1
471,530 + MPMX19_04156 0.61 -1.8
471,530 + MPMX19_04156 0.61 -1.5
471,530 + MPMX19_04156 0.61 -0.5
471,530 + MPMX19_04156 0.61 -2.1
471,530 + MPMX19_04156 0.61 -0.9
471,530 + MPMX19_04156 0.61 +0.4
471,531 - MPMX19_04156 0.61 +0.3
471,531 - MPMX19_04156 0.61 -1.5
471,708 - MPMX19_04156 0.83 +1.0
472,271 + MPMX19_04157 0.31 -0.6
472,272 - MPMX19_04157 0.31 -1.3
472,321 + MPMX19_04157 0.34 +0.1
472,321 + MPMX19_04157 0.34 -0.5
472,322 - MPMX19_04157 0.34 +0.2
472,322 - MPMX19_04157 0.34 -2.3
472,322 - MPMX19_04157 0.34 -0.3
472,322 - MPMX19_04157 0.34 -1.2
472,336 + MPMX19_04157 0.35 -1.9
472,336 + MPMX19_04157 0.35 -0.0
472,336 + MPMX19_04157 0.35 -0.1
472,336 + MPMX19_04157 0.35 -1.0
472,336 + MPMX19_04157 0.35 -0.3
472,336 + MPMX19_04157 0.35 -0.7
472,336 + MPMX19_04157 0.35 +0.2
472,336 + MPMX19_04157 0.35 +1.8
472,336 + MPMX19_04157 0.35 -1.5
472,337 - MPMX19_04157 0.35 +0.4
472,337 - MPMX19_04157 0.35 +0.2
472,337 - MPMX19_04157 0.35 -1.0
472,337 - MPMX19_04157 0.35 -0.7
472,337 - MPMX19_04157 0.35 -0.6
472,337 - MPMX19_04157 0.35 -1.5
472,337 - MPMX19_04157 0.35 +0.2
472,337 - MPMX19_04157 0.35 -1.0
472,337 - MPMX19_04157 0.35 -1.6
472,337 - MPMX19_04157 0.35 -1.4
472,337 - MPMX19_04157 0.35 +0.5
472,337 - MPMX19_04157 0.35 -0.0
472,337 - MPMX19_04157 0.35 -0.0
472,337 - MPMX19_04157 0.35 -0.7
472,337 - MPMX19_04157 0.35 +0.2
472,339 + MPMX19_04157 0.35 -0.0
472,552 + MPMX19_04157 0.51 -2.0
472,552 + MPMX19_04157 0.51 +0.8
472,553 - MPMX19_04157 0.51 -2.0
472,553 - MPMX19_04157 0.51 -0.5
472,553 - MPMX19_04157 0.51 +0.8
472,553 - MPMX19_04157 0.51 -0.3
472,553 - MPMX19_04157 0.51 -0.5
472,553 - MPMX19_04157 0.51 -1.0
472,669 + MPMX19_04157 0.59 -2.0
472,669 + MPMX19_04157 0.59 -0.5
472,669 + MPMX19_04157 0.59 +0.5
472,670 - MPMX19_04157 0.59 -0.0
472,780 + MPMX19_04157 0.67 -0.2
472,781 - MPMX19_04157 0.67 +0.3
472,781 - MPMX19_04157 0.67 -0.0
472,781 - MPMX19_04157 0.67 -1.4
472,859 - MPMX19_04157 0.73 -0.5
473,177 - -0.1
473,211 + -1.6
473,211 + +1.2
473,211 + +0.7
473,212 - -1.0
473,212 - -0.9
473,212 - -2.0
473,212 - -0.6
473,212 - +0.4
473,212 - +0.2
473,212 - -1.7
474,099 + MPMX19_04158 0.39 -0.0
474,099 + MPMX19_04158 0.39 +0.3
474,099 + MPMX19_04158 0.39 -2.4
474,100 - MPMX19_04158 0.39 -0.7

Or see this region's nucleotide sequence