Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04140

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04138 and MPMX19_04139 are separated by 95 nucleotidesMPMX19_04139 and MPMX19_04140 are separated by 35 nucleotidesMPMX19_04140 and MPMX19_04141 are separated by 17 nucleotidesMPMX19_04141 and MPMX19_04142 overlap by 8 nucleotides MPMX19_04138: MPMX19_04138 - hypothetical protein, at 450,213 to 450,674 _04138 MPMX19_04139: MPMX19_04139 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 450,770 to 451,420 _04139 MPMX19_04140: MPMX19_04140 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 451,456 to 452,289 _04140 MPMX19_04141: MPMX19_04141 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 452,307 to 453,026 _04141 MPMX19_04142: MPMX19_04142 - hypothetical protein, at 453,019 to 453,804 _04142 Position (kb) 451 452 453Strain fitness (log2 ratio) -2 -1 0 1 2at 450.465 kb on + strand, within MPMX19_04138at 450.493 kb on - strand, within MPMX19_04138at 450.502 kb on - strand, within MPMX19_04138at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.406 kb on + strandat 451.407 kb on - strandat 451.437 kb on + strandat 451.759 kb on + strand, within MPMX19_04140at 451.759 kb on + strand, within MPMX19_04140at 451.759 kb on + strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.987 kb on + strand, within MPMX19_04140at 451.988 kb on - strand, within MPMX19_04140at 452.050 kb on + strand, within MPMX19_04140at 452.050 kb on + strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.326 kb on + strandat 452.326 kb on + strandat 452.326 kb on + strandat 452.327 kb on - strandat 452.327 kb on - strandat 452.328 kb on - strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.539 kb on + strand, within MPMX19_04141at 452.539 kb on + strand, within MPMX19_04141at 452.539 kb on + strand, within MPMX19_04141at 452.540 kb on - strand, within MPMX19_04141at 452.540 kb on - strand, within MPMX19_04141at 452.540 kb on - strand, within MPMX19_04141at 452.800 kb on + strand, within MPMX19_04141at 452.800 kb on + strand, within MPMX19_04141at 452.800 kb on + strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.956 kb on + strandat 452.956 kb on + strandat 452.962 kb on + strandat 452.962 kb on + strandat 452.962 kb on + strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.236 kb on + strand, within MPMX19_04142at 453.236 kb on + strand, within MPMX19_04142at 453.236 kb on + strand, within MPMX19_04142at 453.237 kb on - strand, within MPMX19_04142at 453.237 kb on - strand, within MPMX19_04142at 453.237 kb on - strand, within MPMX19_04142

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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450,465 + MPMX19_04138 0.55 +0.5
450,493 - MPMX19_04138 0.61 -0.0
450,502 - MPMX19_04138 0.63 +0.5
451,208 + MPMX19_04139 0.67 -0.6
451,208 + MPMX19_04139 0.67 -0.6
451,208 + MPMX19_04139 0.67 +0.3
451,208 + MPMX19_04139 0.67 +0.3
451,208 + MPMX19_04139 0.67 -0.6
451,208 + MPMX19_04139 0.67 +1.0
451,208 + MPMX19_04139 0.67 +0.5
451,208 + MPMX19_04139 0.67 -0.7
451,208 + MPMX19_04139 0.67 +0.0
451,208 + MPMX19_04139 0.67 +1.0
451,209 - MPMX19_04139 0.67 -2.3
451,209 - MPMX19_04139 0.67 -1.1
451,209 - MPMX19_04139 0.67 -1.0
451,402 + +1.0
451,402 + -1.3
451,402 + -1.9
451,402 + -0.0
451,402 + +0.1
451,403 - +0.1
451,403 - +0.8
451,403 - -1.0
451,403 - -1.8
451,403 - -0.2
451,403 - -1.9
451,406 + -1.0
451,407 - +0.7
451,437 + -0.6
451,759 + MPMX19_04140 0.36 -0.3
451,759 + MPMX19_04140 0.36 -0.0
451,759 + MPMX19_04140 0.36 +0.1
451,760 - MPMX19_04140 0.36 -1.0
451,760 - MPMX19_04140 0.36 -1.0
451,760 - MPMX19_04140 0.36 -1.5
451,760 - MPMX19_04140 0.36 +1.0
451,812 + MPMX19_04140 0.43 -1.6
451,812 + MPMX19_04140 0.43 +0.1
451,812 + MPMX19_04140 0.43 -1.0
451,813 - MPMX19_04140 0.43 +0.5
451,813 - MPMX19_04140 0.43 -0.0
451,813 - MPMX19_04140 0.43 -0.6
451,891 + MPMX19_04140 0.52 +0.2
451,891 + MPMX19_04140 0.52 +0.1
451,891 + MPMX19_04140 0.52 -0.7
451,892 - MPMX19_04140 0.52 -0.2
451,892 - MPMX19_04140 0.52 -0.6
451,892 - MPMX19_04140 0.52 -0.0
451,892 - MPMX19_04140 0.52 -0.7
451,892 - MPMX19_04140 0.52 -1.4
451,892 - MPMX19_04140 0.52 -1.3
451,892 - MPMX19_04140 0.52 -0.9
451,987 + MPMX19_04140 0.64 -1.0
451,988 - MPMX19_04140 0.64 -1.9
452,050 + MPMX19_04140 0.71 -0.0
452,050 + MPMX19_04140 0.71 -0.2
452,051 - MPMX19_04140 0.71 +0.3
452,051 - MPMX19_04140 0.71 -1.9
452,051 - MPMX19_04140 0.71 -0.8
452,051 - MPMX19_04140 0.71 +0.0
452,326 + -0.9
452,326 + +0.5
452,326 + -1.6
452,327 - -1.5
452,327 - -1.2
452,328 - +0.4
452,368 + -0.3
452,368 + -0.5
452,368 + +0.2
452,368 + -1.0
452,368 + -0.1
452,368 + -0.6
452,368 + -1.5
452,369 - -0.7
452,369 - +0.4
452,369 - -2.0
452,369 - -2.4
452,369 - -0.5
452,369 - +0.1
452,401 + MPMX19_04141 0.13 +0.0
452,401 + MPMX19_04141 0.13 +0.4
452,401 + MPMX19_04141 0.13 +0.0
452,401 + MPMX19_04141 0.13 -0.3
452,401 + MPMX19_04141 0.13 -0.0
452,401 + MPMX19_04141 0.13 -1.0
452,401 + MPMX19_04141 0.13 -0.9
452,401 + MPMX19_04141 0.13 +0.0
452,401 + MPMX19_04141 0.13 +0.1
452,401 + MPMX19_04141 0.13 +0.4
452,401 + MPMX19_04141 0.13 -0.7
452,401 + MPMX19_04141 0.13 -1.0
452,401 + MPMX19_04141 0.13 -1.4
452,401 + MPMX19_04141 0.13 +0.5
452,401 + MPMX19_04141 0.13 -0.5
452,401 + MPMX19_04141 0.13 -0.4
452,401 + MPMX19_04141 0.13 -0.2
452,402 - MPMX19_04141 0.13 -0.9
452,402 - MPMX19_04141 0.13 -0.1
452,402 - MPMX19_04141 0.13 -0.0
452,402 - MPMX19_04141 0.13 -0.7
452,402 - MPMX19_04141 0.13 +0.1
452,402 - MPMX19_04141 0.13 -0.0
452,402 - MPMX19_04141 0.13 +0.2
452,402 - MPMX19_04141 0.13 -1.9
452,402 - MPMX19_04141 0.13 +0.1
452,402 - MPMX19_04141 0.13 -0.4
452,402 - MPMX19_04141 0.13 -1.3
452,402 - MPMX19_04141 0.13 +1.9
452,402 - MPMX19_04141 0.13 -1.4
452,402 - MPMX19_04141 0.13 +1.4
452,402 - MPMX19_04141 0.13 -1.8
452,539 + MPMX19_04141 0.32 +0.5
452,539 + MPMX19_04141 0.32 -0.6
452,539 + MPMX19_04141 0.32 -0.6
452,540 - MPMX19_04141 0.32 -1.3
452,540 - MPMX19_04141 0.32 -1.5
452,540 - MPMX19_04141 0.32 +0.3
452,800 + MPMX19_04141 0.68 -0.3
452,800 + MPMX19_04141 0.68 +0.0
452,800 + MPMX19_04141 0.68 +1.0
452,801 - MPMX19_04141 0.69 -0.5
452,801 - MPMX19_04141 0.69 +0.5
452,801 - MPMX19_04141 0.69 -0.6
452,801 - MPMX19_04141 0.69 -0.5
452,801 - MPMX19_04141 0.69 +1.2
452,956 + -0.6
452,956 + +0.8
452,962 + +2.1
452,962 + +1.1
452,962 + -0.5
452,963 - -0.8
452,963 - -0.6
452,963 - -2.1
452,963 - -0.2
452,963 - +1.2
452,963 - -0.5
453,107 + MPMX19_04142 0.11 +0.7
453,107 + MPMX19_04142 0.11 +2.2
453,107 + MPMX19_04142 0.11 -0.0
453,107 + MPMX19_04142 0.11 -0.4
453,107 + MPMX19_04142 0.11 +0.1
453,107 + MPMX19_04142 0.11 +0.1
453,107 + MPMX19_04142 0.11 -1.1
453,108 - MPMX19_04142 0.11 +0.7
453,108 - MPMX19_04142 0.11 -2.5
453,108 - MPMX19_04142 0.11 -0.5
453,108 - MPMX19_04142 0.11 -2.7
453,236 + MPMX19_04142 0.28 -1.8
453,236 + MPMX19_04142 0.28 +1.3
453,236 + MPMX19_04142 0.28 -0.5
453,237 - MPMX19_04142 0.28 -0.2
453,237 - MPMX19_04142 0.28 -0.0
453,237 - MPMX19_04142 0.28 -0.3

Or see this region's nucleotide sequence