Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04126 and MPMX19_04127 are separated by 19 nucleotides MPMX19_04127 and MPMX19_04128 are separated by 269 nucleotides MPMX19_04128 and MPMX19_04129 overlap by 4 nucleotides
MPMX19_04126: MPMX19_04126 - hypothetical protein, at 436,696 to 437,424
_04126
MPMX19_04127: MPMX19_04127 - hypothetical protein, at 437,444 to 437,938
_04127
MPMX19_04128: MPMX19_04128 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 438,208 to 438,774
_04128
MPMX19_04129: MPMX19_04129 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 438,771 to 439,781
_04129
Position (kb) 438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 437.333 kb on + strand, within MPMX19_04126 at 437.817 kb on + strand, within MPMX19_04127 at 437.818 kb on - strand, within MPMX19_04127 at 437.818 kb on - strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.896 kb on + strand at 437.896 kb on + strand at 437.896 kb on + strand at 437.897 kb on - strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.298 kb on - strand, within MPMX19_04128 at 438.298 kb on - strand, within MPMX19_04128 at 438.298 kb on - strand, within MPMX19_04128 at 438.298 kb on - strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.586 kb on + strand, within MPMX19_04128 at 438.700 kb on + strand, within MPMX19_04128 at 438.701 kb on - strand, within MPMX19_04128 at 438.786 kb on + strand at 438.786 kb on + strand at 438.786 kb on + strand at 438.786 kb on + strand at 438.786 kb on + strand at 438.786 kb on + strand at 438.786 kb on + strand at 438.787 kb on - strand at 438.787 kb on - strand at 438.787 kb on - strand at 438.787 kb on - strand at 438.787 kb on - strand at 438.787 kb on - strand at 438.787 kb on - strand at 439.026 kb on + strand, within MPMX19_04129 at 439.026 kb on + strand, within MPMX19_04129 at 439.027 kb on - strand, within MPMX19_04129 at 439.027 kb on - strand, within MPMX19_04129 at 439.027 kb on - strand, within MPMX19_04129 at 439.027 kb on - strand, within MPMX19_04129 at 439.050 kb on + strand, within MPMX19_04129 at 439.146 kb on + strand, within MPMX19_04129 at 439.146 kb on + strand, within MPMX19_04129 at 439.146 kb on + strand, within MPMX19_04129 at 439.146 kb on + strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.147 kb on - strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.149 kb on + strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.150 kb on - strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.155 kb on + strand, within MPMX19_04129 at 439.156 kb on - strand, within MPMX19_04129 at 439.156 kb on - strand, within MPMX19_04129 at 439.156 kb on - strand, within MPMX19_04129 at 439.156 kb on - strand, within MPMX19_04129 at 439.156 kb on - strand, within MPMX19_04129 at 439.156 kb on - strand, within MPMX19_04129 at 439.470 kb on + strand, within MPMX19_04129 at 439.470 kb on + strand, within MPMX19_04129 at 439.470 kb on + strand, within MPMX19_04129 at 439.470 kb on + strand, within MPMX19_04129 at 439.471 kb on - strand, within MPMX19_04129 at 439.471 kb on - strand, within MPMX19_04129 at 439.471 kb on - strand, within MPMX19_04129 at 439.471 kb on - strand, within MPMX19_04129 at 439.471 kb on - strand, within MPMX19_04129 at 439.471 kb on - strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.497 kb on + strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129 at 439.498 kb on - strand, within MPMX19_04129
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 437,333 + MPMX19_04126 0.87 -2.8 437,817 + MPMX19_04127 0.75 -1.3 437,818 - MPMX19_04127 0.76 -3.0 437,818 - MPMX19_04127 0.76 -0.3 437,856 + MPMX19_04127 0.83 +0.5 437,856 + MPMX19_04127 0.83 -0.6 437,856 + MPMX19_04127 0.83 +0.3 437,856 + MPMX19_04127 0.83 -1.4 437,856 + MPMX19_04127 0.83 -1.3 437,856 + MPMX19_04127 0.83 -1.8 437,857 - MPMX19_04127 0.83 +0.0 437,857 - MPMX19_04127 0.83 -1.0 437,857 - MPMX19_04127 0.83 -1.0 437,857 - MPMX19_04127 0.83 -0.5 437,868 + MPMX19_04127 0.86 -0.8 437,868 + MPMX19_04127 0.86 +0.4 437,868 + MPMX19_04127 0.86 -0.3 437,868 + MPMX19_04127 0.86 -0.5 437,868 + MPMX19_04127 0.86 +0.3 437,868 + MPMX19_04127 0.86 +0.5 437,868 + MPMX19_04127 0.86 -0.3 437,869 - MPMX19_04127 0.86 -0.8 437,869 - MPMX19_04127 0.86 -0.6 437,869 - MPMX19_04127 0.86 +0.3 437,869 - MPMX19_04127 0.86 +0.7 437,869 - MPMX19_04127 0.86 -1.0 437,869 - MPMX19_04127 0.86 -0.9 437,869 - MPMX19_04127 0.86 -1.7 437,869 - MPMX19_04127 0.86 -0.8 437,869 - MPMX19_04127 0.86 -2.3 437,869 - MPMX19_04127 0.86 -0.9 437,896 + -0.8 437,896 + -0.4 437,896 + +0.7 437,897 - +0.3 438,158 + -1.0 438,158 + -0.4 438,158 + -0.8 438,158 + -1.5 438,158 + -0.8 438,158 + -0.0 438,158 + -1.3 438,158 + -0.0 438,158 + +1.3 438,158 + -2.3 438,158 + -0.8 438,159 - +0.5 438,159 - -0.7 438,159 - -0.1 438,159 - -0.5 438,159 - -0.9 438,159 - -0.6 438,159 - +0.3 438,159 - -0.2 438,159 - -0.0 438,159 - +0.8 438,298 - MPMX19_04128 0.16 -0.3 438,298 - MPMX19_04128 0.16 -0.8 438,298 - MPMX19_04128 0.16 +0.2 438,298 - MPMX19_04128 0.16 +0.0 438,373 + MPMX19_04128 0.29 -0.8 438,373 + MPMX19_04128 0.29 -1.9 438,373 + MPMX19_04128 0.29 +1.1 438,373 + MPMX19_04128 0.29 -1.3 438,373 + MPMX19_04128 0.29 -1.3 438,373 + MPMX19_04128 0.29 -0.5 438,374 - MPMX19_04128 0.29 -1.9 438,374 - MPMX19_04128 0.29 -0.9 438,374 - MPMX19_04128 0.29 +0.9 438,374 - MPMX19_04128 0.29 -0.7 438,374 - MPMX19_04128 0.29 +0.4 438,586 + MPMX19_04128 0.67 -0.6 438,700 + MPMX19_04128 0.87 -1.3 438,701 - MPMX19_04128 0.87 -1.7 438,786 + -0.1 438,786 + +0.5 438,786 + +1.5 438,786 + +0.3 438,786 + -0.0 438,786 + -0.3 438,786 + -0.2 438,787 - -0.7 438,787 - +0.5 438,787 - +0.5 438,787 - -0.1 438,787 - +0.5 438,787 - +0.4 438,787 - +0.1 439,026 + MPMX19_04129 0.25 +0.6 439,026 + MPMX19_04129 0.25 -0.0 439,027 - MPMX19_04129 0.25 -0.4 439,027 - MPMX19_04129 0.25 -0.0 439,027 - MPMX19_04129 0.25 +0.1 439,027 - MPMX19_04129 0.25 +0.3 439,050 + MPMX19_04129 0.28 -0.5 439,146 + MPMX19_04129 0.37 +2.0 439,146 + MPMX19_04129 0.37 -1.0 439,146 + MPMX19_04129 0.37 +0.6 439,146 + MPMX19_04129 0.37 -0.0 439,147 - MPMX19_04129 0.37 +1.3 439,147 - MPMX19_04129 0.37 -0.3 439,147 - MPMX19_04129 0.37 +0.4 439,147 - MPMX19_04129 0.37 -0.2 439,147 - MPMX19_04129 0.37 +0.4 439,147 - MPMX19_04129 0.37 +0.5 439,147 - MPMX19_04129 0.37 -1.0 439,147 - MPMX19_04129 0.37 -0.5 439,147 - MPMX19_04129 0.37 -2.6 439,149 + MPMX19_04129 0.37 +0.1 439,149 + MPMX19_04129 0.37 +0.7 439,149 + MPMX19_04129 0.37 -0.3 439,149 + MPMX19_04129 0.37 +0.3 439,149 + MPMX19_04129 0.37 -1.3 439,149 + MPMX19_04129 0.37 -0.5 439,149 + MPMX19_04129 0.37 -1.3 439,149 + MPMX19_04129 0.37 -0.4 439,149 + MPMX19_04129 0.37 -0.2 439,149 + MPMX19_04129 0.37 -0.9 439,149 + MPMX19_04129 0.37 +0.5 439,149 + MPMX19_04129 0.37 +0.1 439,149 + MPMX19_04129 0.37 +0.9 439,149 + MPMX19_04129 0.37 -0.3 439,149 + MPMX19_04129 0.37 +0.9 439,150 - MPMX19_04129 0.37 -1.7 439,150 - MPMX19_04129 0.37 -1.3 439,150 - MPMX19_04129 0.37 +0.3 439,150 - MPMX19_04129 0.37 -0.3 439,150 - MPMX19_04129 0.37 -1.0 439,150 - MPMX19_04129 0.37 +0.2 439,150 - MPMX19_04129 0.37 +0.8 439,150 - MPMX19_04129 0.37 +0.3 439,150 - MPMX19_04129 0.37 -0.8 439,150 - MPMX19_04129 0.37 -0.1 439,150 - MPMX19_04129 0.37 -0.7 439,155 + MPMX19_04129 0.38 -2.4 439,155 + MPMX19_04129 0.38 -3.0 439,155 + MPMX19_04129 0.38 +1.3 439,155 + MPMX19_04129 0.38 +0.8 439,155 + MPMX19_04129 0.38 -0.4 439,155 + MPMX19_04129 0.38 -0.4 439,155 + MPMX19_04129 0.38 -0.3 439,155 + MPMX19_04129 0.38 -1.3 439,155 + MPMX19_04129 0.38 -0.3 439,155 + MPMX19_04129 0.38 +1.1 439,155 + MPMX19_04129 0.38 +1.1 439,156 - MPMX19_04129 0.38 -0.5 439,156 - MPMX19_04129 0.38 -1.8 439,156 - MPMX19_04129 0.38 +0.5 439,156 - MPMX19_04129 0.38 -0.5 439,156 - MPMX19_04129 0.38 +0.5 439,156 - MPMX19_04129 0.38 -1.4 439,470 + MPMX19_04129 0.69 +0.8 439,470 + MPMX19_04129 0.69 -0.2 439,470 + MPMX19_04129 0.69 +0.4 439,470 + MPMX19_04129 0.69 -0.2 439,471 - MPMX19_04129 0.69 -0.6 439,471 - MPMX19_04129 0.69 +0.5 439,471 - MPMX19_04129 0.69 +0.7 439,471 - MPMX19_04129 0.69 -0.0 439,471 - MPMX19_04129 0.69 -0.1 439,471 - MPMX19_04129 0.69 +1.0 439,497 + MPMX19_04129 0.72 -0.4 439,497 + MPMX19_04129 0.72 -0.2 439,497 + MPMX19_04129 0.72 +0.8 439,497 + MPMX19_04129 0.72 -0.8 439,497 + MPMX19_04129 0.72 +0.0 439,497 + MPMX19_04129 0.72 -0.2 439,497 + MPMX19_04129 0.72 +0.2 439,497 + MPMX19_04129 0.72 -0.0 439,498 - MPMX19_04129 0.72 -1.9 439,498 - MPMX19_04129 0.72 -1.3 439,498 - MPMX19_04129 0.72 +0.5 439,498 - MPMX19_04129 0.72 -1.6 439,498 - MPMX19_04129 0.72 -0.3 439,498 - MPMX19_04129 0.72 -1.6 439,498 - MPMX19_04129 0.72 -0.2 439,498 - MPMX19_04129 0.72 -1.0 439,498 - MPMX19_04129 0.72 -0.1
Or see this region's nucleotide sequence