Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04124

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04123 and MPMX19_04124 are separated by 130 nucleotidesMPMX19_04124 and MPMX19_04125 are separated by 135 nucleotidesMPMX19_04125 and MPMX19_04126 are separated by 126 nucleotides MPMX19_04123: MPMX19_04123 - Asparagine synthetase [glutamine-hydrolyzing] 1, at 432,540 to 434,330 _04123 MPMX19_04124: MPMX19_04124 - hypothetical protein, at 434,461 to 435,942 _04124 MPMX19_04125: MPMX19_04125 - hypothetical protein, at 436,078 to 436,569 _04125 MPMX19_04126: MPMX19_04126 - hypothetical protein, at 436,696 to 437,424 _04126 Position (kb) 434 435 436Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.663 kb on + strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.664 kb on - strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.780 kb on + strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.781 kb on - strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.885 kb on + strand, within MPMX19_04123at 433.886 kb on - strand, within MPMX19_04123at 433.886 kb on - strand, within MPMX19_04123at 433.886 kb on - strand, within MPMX19_04123at 433.886 kb on - strand, within MPMX19_04123at 433.886 kb on - strand, within MPMX19_04123at 433.886 kb on - strand, within MPMX19_04123at 434.005 kb on + strand, within MPMX19_04123at 434.005 kb on + strand, within MPMX19_04123at 434.005 kb on + strand, within MPMX19_04123at 434.005 kb on + strand, within MPMX19_04123at 434.005 kb on + strand, within MPMX19_04123at 434.005 kb on + strand, within MPMX19_04123at 434.006 kb on - strand, within MPMX19_04123at 434.006 kb on - strand, within MPMX19_04123at 434.006 kb on - strand, within MPMX19_04123at 434.006 kb on - strand, within MPMX19_04123at 434.006 kb on - strand, within MPMX19_04123at 434.006 kb on - strand, within MPMX19_04123at 434.050 kb on + strand, within MPMX19_04123at 434.050 kb on + strand, within MPMX19_04123at 434.051 kb on - strand, within MPMX19_04123at 434.051 kb on - strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.092 kb on + strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.093 kb on - strand, within MPMX19_04123at 434.462 kb on + strandat 434.462 kb on + strandat 434.462 kb on + strandat 434.462 kb on + strandat 434.462 kb on + strandat 434.463 kb on - strandat 434.463 kb on - strandat 434.463 kb on - strandat 434.463 kb on - strandat 434.463 kb on - strandat 435.162 kb on - strand, within MPMX19_04124at 435.173 kb on + strand, within MPMX19_04124at 435.173 kb on + strand, within MPMX19_04124at 435.173 kb on + strand, within MPMX19_04124at 435.174 kb on - strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.347 kb on + strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.348 kb on - strand, within MPMX19_04124at 435.653 kb on + strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 435.654 kb on - strand, within MPMX19_04124at 436.120 kb on + strandat 436.120 kb on + strandat 436.121 kb on - strandat 436.121 kb on - strandat 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.172 kb on + strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.173 kb on - strand, within MPMX19_04125at 436.377 kb on + strand, within MPMX19_04125at 436.378 kb on - strand, within MPMX19_04125at 436.588 kb on - strandat 436.602 kb on + strandat 436.603 kb on - strandat 436.603 kb on - strandat 436.603 kb on - strandat 436.604 kb on + strandat 436.605 kb on - strandat 436.605 kb on - strandat 436.605 kb on - strandat 436.675 kb on + strandat 436.675 kb on + strandat 436.676 kb on - strandat 436.676 kb on - strandat 436.677 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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433,663 + MPMX19_04123 0.63 +0.3
433,663 + MPMX19_04123 0.63 +1.1
433,663 + MPMX19_04123 0.63 -0.0
433,663 + MPMX19_04123 0.63 -0.0
433,663 + MPMX19_04123 0.63 +0.2
433,663 + MPMX19_04123 0.63 -0.8
433,663 + MPMX19_04123 0.63 -0.8
433,663 + MPMX19_04123 0.63 +1.2
433,663 + MPMX19_04123 0.63 +0.3
433,663 + MPMX19_04123 0.63 +2.0
433,663 + MPMX19_04123 0.63 +0.1
433,663 + MPMX19_04123 0.63 +0.1
433,663 + MPMX19_04123 0.63 +0.1
433,664 - MPMX19_04123 0.63 -1.3
433,664 - MPMX19_04123 0.63 -0.4
433,664 - MPMX19_04123 0.63 +0.3
433,664 - MPMX19_04123 0.63 +0.8
433,664 - MPMX19_04123 0.63 +0.6
433,664 - MPMX19_04123 0.63 +1.1
433,664 - MPMX19_04123 0.63 -0.3
433,664 - MPMX19_04123 0.63 -0.4
433,664 - MPMX19_04123 0.63 -0.3
433,664 - MPMX19_04123 0.63 +0.2
433,664 - MPMX19_04123 0.63 +2.3
433,664 - MPMX19_04123 0.63 +1.3
433,664 - MPMX19_04123 0.63 -0.3
433,664 - MPMX19_04123 0.63 -0.4
433,780 + MPMX19_04123 0.69 -0.6
433,780 + MPMX19_04123 0.69 -1.8
433,780 + MPMX19_04123 0.69 -1.4
433,780 + MPMX19_04123 0.69 -0.1
433,780 + MPMX19_04123 0.69 -0.7
433,780 + MPMX19_04123 0.69 +0.3
433,780 + MPMX19_04123 0.69 +0.6
433,780 + MPMX19_04123 0.69 -0.0
433,780 + MPMX19_04123 0.69 -1.9
433,780 + MPMX19_04123 0.69 -0.8
433,780 + MPMX19_04123 0.69 +1.2
433,780 + MPMX19_04123 0.69 +0.1
433,780 + MPMX19_04123 0.69 +0.7
433,780 + MPMX19_04123 0.69 +0.0
433,780 + MPMX19_04123 0.69 -0.8
433,780 + MPMX19_04123 0.69 +0.6
433,780 + MPMX19_04123 0.69 -0.3
433,780 + MPMX19_04123 0.69 +1.6
433,780 + MPMX19_04123 0.69 -0.7
433,780 + MPMX19_04123 0.69 +0.0
433,780 + MPMX19_04123 0.69 -1.0
433,780 + MPMX19_04123 0.69 -1.9
433,781 - MPMX19_04123 0.69 -0.8
433,781 - MPMX19_04123 0.69 -0.3
433,781 - MPMX19_04123 0.69 -0.0
433,781 - MPMX19_04123 0.69 +0.9
433,781 - MPMX19_04123 0.69 -0.8
433,781 - MPMX19_04123 0.69 +0.4
433,781 - MPMX19_04123 0.69 -0.0
433,781 - MPMX19_04123 0.69 +0.2
433,781 - MPMX19_04123 0.69 -0.1
433,781 - MPMX19_04123 0.69 -1.0
433,781 - MPMX19_04123 0.69 -1.0
433,781 - MPMX19_04123 0.69 -0.6
433,781 - MPMX19_04123 0.69 +0.4
433,781 - MPMX19_04123 0.69 +0.4
433,781 - MPMX19_04123 0.69 -0.1
433,781 - MPMX19_04123 0.69 -0.3
433,781 - MPMX19_04123 0.69 -0.8
433,781 - MPMX19_04123 0.69 -1.1
433,781 - MPMX19_04123 0.69 -0.5
433,781 - MPMX19_04123 0.69 -1.2
433,781 - MPMX19_04123 0.69 -0.5
433,781 - MPMX19_04123 0.69 -0.1
433,781 - MPMX19_04123 0.69 +0.4
433,781 - MPMX19_04123 0.69 +0.9
433,781 - MPMX19_04123 0.69 +0.0
433,781 - MPMX19_04123 0.69 +0.2
433,781 - MPMX19_04123 0.69 -0.0
433,781 - MPMX19_04123 0.69 -1.4
433,885 + MPMX19_04123 0.75 -0.0
433,885 + MPMX19_04123 0.75 -0.1
433,885 + MPMX19_04123 0.75 -0.4
433,885 + MPMX19_04123 0.75 -0.4
433,885 + MPMX19_04123 0.75 -1.3
433,885 + MPMX19_04123 0.75 -1.8
433,885 + MPMX19_04123 0.75 -0.9
433,886 - MPMX19_04123 0.75 +0.6
433,886 - MPMX19_04123 0.75 +0.3
433,886 - MPMX19_04123 0.75 -0.2
433,886 - MPMX19_04123 0.75 +0.3
433,886 - MPMX19_04123 0.75 -0.0
433,886 - MPMX19_04123 0.75 +0.4
434,005 + MPMX19_04123 0.82 -0.3
434,005 + MPMX19_04123 0.82 -0.3
434,005 + MPMX19_04123 0.82 -1.4
434,005 + MPMX19_04123 0.82 +2.0
434,005 + MPMX19_04123 0.82 -0.2
434,005 + MPMX19_04123 0.82 -0.8
434,006 - MPMX19_04123 0.82 -1.1
434,006 - MPMX19_04123 0.82 -2.1
434,006 - MPMX19_04123 0.82 -0.4
434,006 - MPMX19_04123 0.82 +0.7
434,006 - MPMX19_04123 0.82 +2.6
434,006 - MPMX19_04123 0.82 -0.0
434,050 + MPMX19_04123 0.84 -0.9
434,050 + MPMX19_04123 0.84 -0.3
434,051 - MPMX19_04123 0.84 +0.2
434,051 - MPMX19_04123 0.84 -0.4
434,092 + MPMX19_04123 0.87 -0.9
434,092 + MPMX19_04123 0.87 -0.7
434,092 + MPMX19_04123 0.87 -0.6
434,092 + MPMX19_04123 0.87 -0.4
434,092 + MPMX19_04123 0.87 -0.5
434,092 + MPMX19_04123 0.87 +0.1
434,092 + MPMX19_04123 0.87 +0.6
434,092 + MPMX19_04123 0.87 -1.5
434,092 + MPMX19_04123 0.87 -0.4
434,093 - MPMX19_04123 0.87 -0.2
434,093 - MPMX19_04123 0.87 +0.4
434,093 - MPMX19_04123 0.87 -0.6
434,093 - MPMX19_04123 0.87 -0.3
434,093 - MPMX19_04123 0.87 -0.1
434,093 - MPMX19_04123 0.87 -0.3
434,093 - MPMX19_04123 0.87 -0.0
434,462 + -1.0
434,462 + -1.0
434,462 + -1.5
434,462 + +0.1
434,462 + +1.0
434,463 - -0.6
434,463 - +0.3
434,463 - -0.6
434,463 - -0.1
434,463 - -0.9
435,162 - MPMX19_04124 0.47 -0.0
435,173 + MPMX19_04124 0.48 +0.7
435,173 + MPMX19_04124 0.48 -0.9
435,173 + MPMX19_04124 0.48 -1.3
435,174 - MPMX19_04124 0.48 +1.5
435,347 + MPMX19_04124 0.60 -0.0
435,347 + MPMX19_04124 0.60 -0.5
435,347 + MPMX19_04124 0.60 -0.3
435,347 + MPMX19_04124 0.60 +1.2
435,347 + MPMX19_04124 0.60 +0.1
435,347 + MPMX19_04124 0.60 -0.0
435,347 + MPMX19_04124 0.60 -0.3
435,347 + MPMX19_04124 0.60 -1.6
435,347 + MPMX19_04124 0.60 -0.8
435,347 + MPMX19_04124 0.60 +0.1
435,347 + MPMX19_04124 0.60 -1.0
435,348 - MPMX19_04124 0.60 -0.3
435,348 - MPMX19_04124 0.60 -0.6
435,348 - MPMX19_04124 0.60 -0.0
435,348 - MPMX19_04124 0.60 -0.7
435,348 - MPMX19_04124 0.60 -1.3
435,348 - MPMX19_04124 0.60 +0.8
435,348 - MPMX19_04124 0.60 -0.7
435,348 - MPMX19_04124 0.60 -0.1
435,348 - MPMX19_04124 0.60 +0.4
435,348 - MPMX19_04124 0.60 -0.8
435,653 + MPMX19_04124 0.80 -0.6
435,654 - MPMX19_04124 0.80 -1.5
435,654 - MPMX19_04124 0.80 +1.5
435,654 - MPMX19_04124 0.80 -0.7
435,654 - MPMX19_04124 0.80 -0.3
435,654 - MPMX19_04124 0.80 +1.8
436,120 + +1.0
436,120 + -0.0
436,121 - -0.3
436,121 - +0.2
436,172 + MPMX19_04125 0.19 +0.2
436,172 + MPMX19_04125 0.19 -0.5
436,172 + MPMX19_04125 0.19 -1.0
436,172 + MPMX19_04125 0.19 +0.3
436,172 + MPMX19_04125 0.19 +0.1
436,172 + MPMX19_04125 0.19 -1.0
436,172 + MPMX19_04125 0.19 +0.4
436,172 + MPMX19_04125 0.19 +0.5
436,173 - MPMX19_04125 0.19 -0.0
436,173 - MPMX19_04125 0.19 -0.2
436,173 - MPMX19_04125 0.19 -0.1
436,173 - MPMX19_04125 0.19 +0.2
436,173 - MPMX19_04125 0.19 +0.4
436,173 - MPMX19_04125 0.19 +1.1
436,173 - MPMX19_04125 0.19 -1.8
436,173 - MPMX19_04125 0.19 -0.0
436,173 - MPMX19_04125 0.19 -0.3
436,173 - MPMX19_04125 0.19 -2.9
436,377 + MPMX19_04125 0.61 +0.3
436,378 - MPMX19_04125 0.61 -0.6
436,588 - -2.3
436,602 + -1.2
436,603 - +1.1
436,603 - -0.8
436,603 - -2.3
436,604 + -0.3
436,605 - -2.0
436,605 - +0.2
436,605 - -0.2
436,675 + -0.6
436,675 + +1.1
436,676 - -0.5
436,676 - -0.4
436,677 + -0.4
436,757 + -0.0
436,757 + -2.5
436,757 + -0.8
436,757 + -1.3
436,758 - -0.5
436,758 - -2.4
436,758 - -0.6
436,758 - -1.0
436,758 - +1.0

Or see this region's nucleotide sequence